Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : ZJO

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 58


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 RU1 RU RU1 N N N 0 -1.106 -0.25 -0.013
2 RU2 RU RU2 N N N 0 1.148 0.536 0.894
3 N1 N N1 N N N 0 1.928 -0.697 -0.382
4 N4 N N2 N N N 0 0.589 2.332 0.438
5 N3 N N3 N N N 0 -2.043 1.36 0.174
6 N2 N N4 N N N 0 -0.593 -1.97 -0.538
7 C1 C C1 N Y N 0 1.373 2.853 -0.593
8 C2 C C2 N Y N 0 -3.867 2.911 0.474
9 C3 C C3 N Y N 0 -3.405 1.606 0.361
10 C4 C C4 N Y N 0 1.069 4.093 -1.14
11 C5 C C5 N Y N 0 3.14 -1.207 0.091
12 C6 C C6 N Y N 0 2.927 3.887 -2.636
13 C7 C C7 N Y N 0 -4.3 0.547 0.435
14 C9 C C8 N Y N 0 -1.379 -3.095 -0.799
15 C10 C C9 N Y N 0 -5.646 0.793 0.62
16 C11 C C10 N Y N 0 2.463 2.136 -1.07
17 C12 C C11 N Y N 0 1.846 4.606 -2.16
18 C13 C C12 N N N 0 0.926 -1.802 -0.602
19 C14 C C13 N Y N 0 -6.103 2.094 0.731
20 C15 C C14 N Y N 0 4.317 -0.961 -0.604
21 C16 C C15 N N N 0 -0.859 2.324 0.06
22 C17 C C16 N Y N 0 3.237 2.655 -2.09
23 C18 C C17 N Y N 0 -5.214 3.151 0.664
24 C20 C C18 N Y N 0 3.171 -1.957 1.26
25 C21 C C19 N Y N 0 -0.78 -4.289 -1.181
26 C23 C C20 N Y N 0 -2.76 -3.024 -0.672
27 C25 C C21 N Y N 0 5.513 -1.467 -0.134
28 C26 C C22 N Y N 0 4.37 -2.459 1.725
29 C27 C C23 N Y N 0 -3.533 -4.14 -0.926
30 C28 C C24 N Y N 0 -1.559 -5.399 -1.438
31 C29 C C25 N Y N 0 5.539 -2.217 1.027
32 C30 C C26 N Y N 0 -2.934 -5.327 -1.306
33 O5 O O1 N N N 0 1.639 0.273 2.648
34 H1 H H1 N N N 0 -3.174 3.737 0.418
35 H2 H H2 N N N 0 0.225 4.655 -0.769
36 H3 H H3 N N N 0 3.533 4.29 -3.434
37 H4 H H4 N N N 0 -3.944 -0.469 0.347
38 H5 H H5 N N N 0 -6.343 -0.03 0.677
39 H6 H H6 N N N 0 2.706 1.174 -0.643
40 H7 H H7 N N N 0 1.61 5.57 -2.586
41 H8 H H8 N N N 0 1.186 -2.193 -1.586
42 H9 H H9 N N N 0 1.301 -2.616 0.019
43 H10 H H10 N N N 0 -7.156 2.284 0.876
44 H11 H H11 N N N 0 4.297 -0.375 -1.511
45 H12 H H12 N N N 0 -1.241 3.252 0.485
46 H13 H H13 N N N 0 -0.851 2.598 -0.995
47 H14 H H14 N N N 0 4.084 2.097 -2.461
48 H15 H H15 N N N 0 -5.574 4.165 0.752
49 H16 H H16 N N N 0 2.258 -2.146 1.805
50 H17 H H17 N N N 0 0.294 -4.348 -1.277
51 H18 H H18 N N N 0 -3.229 -2.098 -0.375
52 H19 H H19 N N N 0 6.429 -1.275 -0.673
53 H20 H H20 N N N 0 4.395 -3.042 2.634
54 H21 H H21 N N N 0 -4.607 -4.087 -0.823
55 H22 H H22 N N N 0 -1.094 -6.328 -1.735
56 H23 H H23 N N N 0 6.476 -2.612 1.393
57 H24 H H24 N N N 0 -3.541 -6.198 -1.503
58 H25 H H25 N N N 0 2.48 0.685 2.887