Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : Z3K

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 43


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 S N N 0 -0.272 -0.933 -0.474
2 C2 C C2 R N N 0 -1.28 0.046 0.133
3 C21 C C21 N N N 0 -3.381 -1.077 0.193
4 C2M C C2M N N N 0 -4.758 -1.376 -0.342
5 C3 C C3 S N N 0 -0.839 1.48 -0.178
6 C31 C C31 N N N 0 -1.927 3.6 -0.153
7 C3M C C3M N N N 0 -2.857 4.623 0.446
8 C4 C C4 R N N 0 0.578 1.695 0.362
9 C5 C C5 R N N 0 1.515 0.652 -0.254
10 C6 C C6 N N N 0 2.92 0.822 0.325
11 C61 C C61 N N N 0 5.116 -0.062 0.05
12 C6M C C6M N N N 0 6.122 -0.978 -0.599
13 N3S N N3S N N N 0 0.486 -3.565 -0.641
14 O1S O O1S N N N 0 -0.692 -2.828 1.357
15 O2 O O2 N N N 0 -2.593 -0.192 -0.438
16 O21 O O21 N N N 0 -2.986 -1.633 1.191
17 O2S O O2S N N N 0 -1.884 -3.034 -0.802
18 O3 O O3 N N N 0 -1.749 2.417 0.456
19 O31 O O31 N N N 0 -1.341 3.845 -1.181
20 O4 O O4 N N N 0 1.028 3.006 0.013
21 O5 O O5 N N N 0 1.03 -0.658 0.047
22 O6 O O6 N N N 0 3.833 -0.087 -0.344
23 O61 O O61 N N N 0 5.464 0.694 0.926
24 S1 S S1 N N N 0 -0.747 -2.631 -0.049
25 H1 H H1 N N N 0 -0.261 -0.818 -1.558
26 H1N3 H H1N3 N N N 0 0.458 -4.529 -0.534
27 H2 H H2 N N N 0 -1.321 -0.096 1.213
28 H2M1 H H2M1 N N N 0 -5.029 -2.402 -0.093
29 H2M2 H H2M2 N N N 0 -5.478 -0.691 0.105
30 H2M3 H H2M3 N N N 0 -4.762 -1.252 -1.424
31 H2N3 H H2N3 N N N 0 1.235 -3.149 -1.095
32 H3 H H3 N N N 0 -0.846 1.637 -1.257
33 H3M1 H H3M1 N N N 0 -3.862 4.207 0.511
34 H3M2 H H3M2 N N N 0 -2.51 4.89 1.444
35 H3M3 H H3M3 N N N 0 -2.872 5.513 -0.183
36 H4 H H4 N N N 0 0.576 1.586 1.446
37 H4O H H4O N N N 0 1.921 3.211 0.324
38 H5 H H5 N N N 0 1.548 0.788 -1.336
39 H61 H H61 N N N 0 3.254 1.849 0.174
40 H62 H H62 N N N 0 2.903 0.6 1.392
41 H6M1 H H6M1 N N N 0 6.171 -0.765 -1.667
42 H6M2 H H6M2 N N N 0 7.102 -0.816 -0.151
43 H6M3 H H6M3 N N N 0 5.82 -2.014 -0.449