Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : YNP

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 89


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N N N 0 2.648 -1.303 -0.26
2 C2 C C1 R N N 0 1.215 -3.092 0.59
3 C4 C C2 N N N 0 3.282 -0.747 -1.341
4 C5 C C3 S N N 0 3.562 0.736 -1.323
5 C6 C C4 N N N 0 1.55 1.74 -0.455
6 O2 O O1 N N N 0 1.976 1.482 0.654
7 N2 N N2 N N N 0 2.29 1.454 -1.563
8 O4 O O2 N N N 0 -2.737 0.05 2.074
9 C7 C C5 N N N 0 0.23 2.367 -0.619
10 O6 O O3 N N N 0 -0.464 -2.832 -1.043
11 C8 C C6 N N N 0 -0.502 2.659 0.452
12 C10 C C7 S N N 0 -2.943 2.26 0.65
13 C11 C C8 N N N 0 -2.533 -0.088 0.891
14 C12 C C9 S N N 0 -2.192 -1.456 0.358
15 C13 C C10 N N N 0 -0.116 -2.593 0.089
16 C14 C C11 N N N 0 -3.287 -2.446 0.758
17 C15 C C12 N N N 0 -4.595 -2.072 0.058
18 C16 C C13 N N N 0 -4.438 -2.262 -1.452
19 C17 C C14 N N N 0 -5.723 -2.969 0.57
20 C18 C C15 S N N 0 -4.294 2.728 0.106
21 C19 C C16 N N N 0 -4.649 4.084 0.721
22 C20 C C17 R N N 0 -5.372 1.706 0.47
23 C21 C C18 R N N 0 -6.788 1.945 -0.057
24 C22 C C19 N Y N 0 -7.62 0.739 -0.409
25 C23 C C20 N Y N 0 -7.703 0.316 -1.723
26 C24 C C21 N Y N 0 -8.466 -0.79 -2.046
27 C25 C C22 N Y N 0 -9.147 -1.474 -1.056
28 C26 C C23 N Y N 0 -9.063 -1.051 0.258
29 C27 C C24 N Y N 0 -8.296 0.051 0.582
30 C28 C C25 N N N 0 4.13 1.137 0.04
31 C29 C C26 N Y N 0 5.542 0.625 0.166
32 C3 C C27 N N N 0 2.307 -2.739 -0.422
33 C30 C C28 N Y N 0 6.6 1.412 -0.248
34 C31 C C29 N Y N 0 7.896 0.945 -0.134
35 C32 C C30 N Y N 0 8.134 -0.315 0.398
36 C33 C C31 N Y N 0 7.069 -1.102 0.813
37 C34 C C32 N Y N 0 5.776 -0.628 0.701
38 C35 C C33 N N N 0 9.576 -2.083 1.068
39 C49 C C34 N N N 0 1.533 -2.432 1.934
40 C9 C C35 N N N 0 -1.865 3.283 0.286
41 O1 O O4 N N N 0 3.61 -1.429 -2.288
42 O3 O O5 N N N 0 -2.608 0.973 0.068
43 O5 O O6 N N N 0 -0.916 -1.884 0.901
44 O7 O O7 N N N 0 -6.439 2.135 1.317
45 O8 O O8 N N N 0 9.407 -0.777 0.512
46 CL1 CL CL1 N N N 0 9.226 1.933 -0.654
47 H1 H H1 N N N 0 2.444 -0.801 0.544
48 H2 H H2 N N N 0 1.173 -4.173 0.717
49 H3 H H3 N N N 0 4.278 0.984 -2.106
50 H4 H H4 N N N 0 2.001 1.705 -2.454
51 H5 H H5 N N N 0 -0.147 2.587 -1.608
52 H6 H H6 N N N 0 -0.125 2.444 1.439
53 H7 H H7 N N N 0 -3.001 2.164 1.734
54 H8 H H8 N N N 0 -2.12 -1.414 -0.729
55 H9 H H9 N N N 0 -2.992 -3.453 0.462
56 H10 H H10 N N N 0 -3.431 -2.413 1.838
57 H11 H H11 N N N 0 -4.835 -1.03 0.27
58 H12 H H12 N N N 0 -4.225 -3.309 -1.666
59 H13 H H13 N N N 0 -5.36 -1.968 -1.953
60 H14 H H14 N N N 0 -3.615 -1.643 -1.813
61 H15 H H15 N N N 0 -5.835 -2.833 1.646
62 H16 H H16 N N N 0 -6.655 -2.702 0.071
63 H17 H H17 N N N 0 -5.483 -4.011 0.358
64 H21 H H21 N N N 0 -4.707 3.987 1.805
65 H18 H H18 N N N 0 -4.236 2.825 -0.978
66 H19 H H19 N N N 0 -3.881 4.813 0.462
67 H20 H H20 N N N 0 -5.612 4.418 0.334
68 H22 H H22 N N N 0 -5.033 0.674 0.564
69 H23 H H23 N N N 0 -6.961 2.833 -0.665
70 H24 H H24 N N N 0 -7.172 0.851 -2.497
71 H25 H H25 N N N 0 -8.531 -1.12 -3.072
72 H26 H H26 N N N 0 -9.744 -2.338 -1.309
73 H27 H H27 N N N 0 -9.595 -1.585 1.031
74 H28 H H28 N N N 0 -8.231 0.381 1.608
75 H29 H H29 N N N 0 4.128 2.223 0.13
76 H30 H H30 N N N 0 3.515 0.706 0.831
77 H31 H H31 N N N 0 1.942 -2.918 -1.433
78 H32 H H32 N N N 0 3.191 -3.349 -0.236
79 H33 H H33 N N N 0 6.414 2.392 -0.662
80 H34 H H34 N N N 0 7.251 -2.083 1.227
81 H35 H H35 N N N 0 4.948 -1.241 1.024
82 H36 H H36 N N N 0 9.054 -2.812 0.449
83 H37 H H37 N N N 0 10.637 -2.329 1.102
84 H38 H H38 N N N 0 9.166 -2.104 2.078
85 H39 H H39 N N N 0 1.443 -1.35 1.838
86 H43 H H43 N N N 0 -1.997 3.598 -0.749
87 H40 H H40 N N N 0 0.832 -2.789 2.688
88 H41 H H41 N N N 0 2.549 -2.688 2.232
89 H42 H H42 N N N 0 -1.95 4.149 0.943