Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : Y8M

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 33


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C10 C C1 N Y N 0 -3.475 1.197 -0.032
2 C13 C C2 N Y N 0 -4.557 -1.193 0.84
3 C15 C C3 N Y N 0 2.599 -1.201 -0.412
4 C02 C C4 N Y N 0 4.369 0.003 0.669
5 C03 C C5 N Y N 0 3.777 1.203 0.298
6 C04 C C6 N Y N 0 2.6 1.196 -0.424
7 C05 C C7 N Y N 0 2.011 -0.004 -0.779
8 C06 C C8 N N N 0 0.728 -0.008 -1.569
9 C07 C C9 N N N 0 -0.462 -0.003 -0.607
10 C08 C C10 N N N 0 -1.766 -0.007 -1.408
11 C09 C C11 N Y N 0 -2.938 -0.002 -0.46
12 C11 C C12 N Y N 0 -4.55 1.202 0.837
13 C12 C C13 N Y N 0 -5.091 0.007 1.273
14 C14 C C14 N Y N 0 -3.475 -1.197 -0.02
15 C16 C C15 N Y N 0 3.776 -1.201 0.31
16 N01 N N1 N N N 0 5.56 0.006 1.399
17 H1 H H1 N N N 0 -3.052 2.131 -0.372
18 H2 H H2 N N N 0 -4.98 -2.126 1.181
19 H3 H H3 N N N 0 2.135 -2.136 -0.687
20 H4 H H4 N N N 0 4.236 2.141 0.575
21 H5 H H5 N N N 0 2.138 2.129 -0.713
22 H6 H H6 N N N 0 0.687 0.879 -2.201
23 H7 H H7 N N N 0 0.687 -0.901 -2.192
24 H8 H H8 N N N 0 -0.422 -0.89 0.026
25 H9 H H9 N N N 0 -0.422 0.89 0.017
26 H10 H H10 N N N 0 -1.806 0.88 -2.04
27 H11 H H11 N N N 0 -1.806 -0.9 -2.032
28 H12 H H12 N N N 0 -4.967 2.139 1.176
29 H13 H H13 N N N 0 -5.937 0.01 1.946
30 H14 H H14 N N N 0 -3.058 -2.134 -0.358
31 H15 H H15 N N N 0 4.234 -2.136 0.597
32 H16 H H16 N N N 0 5.974 0.848 1.648
33 H17 H H17 N N N 0 5.973 -0.832 1.657