Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : Y7G

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 71


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C02 C C1 N N N 0 2.728 -0.441 0.002
2 C04 C C2 S N N 0 0.35 0.029 0.248
3 C05 C C3 N N N 0 0.293 1.339 1.037
4 C06 C C4 N N N 0 1.438 1.373 2.052
5 C07 C C5 N N N 0 1.457 2.732 2.754
6 C08 C C6 N N N 0 1.232 0.267 3.089
7 C09 C C7 N N N 0 -0.846 -0.059 -0.665
8 C11 C C8 S N N 0 -3.253 -0.129 -1.036
9 C12 C C9 N N N 0 -4.462 -0.634 -0.245
10 C13 C C10 S N N 0 -4.186 -2.052 0.258
11 C14 C C11 N N N 0 -5.361 -2.568 1.059
12 C16 C C12 N N N 0 -4.738 -4.306 -0.35
13 C17 C C13 N N N 0 -4.077 -3.036 -0.93
14 C19 C C14 S N N 0 -3.561 1.256 -1.609
15 C23 C C15 N N N 0 5.056 -0.959 -0.073
16 C24 C C16 S N N 0 6.225 -0.932 -1.06
17 C25 C C17 R N N 0 7.49 -1.584 -0.422
18 C26 C C18 N N N 0 7.598 -0.93 0.989
19 C27 C C19 N N N 0 8.011 0.533 0.711
20 C28 C C20 S N N 0 8.115 0.625 -0.842
21 C29 C C21 N N N 0 8.627 -0.834 -1.2
22 C30 C C22 N N N 0 6.644 0.526 -1.359
23 N03 N N1 N N N 0 1.577 -0.008 -0.55
24 N10 N N2 N N N 0 -2.091 -0.043 -0.148
25 N15 N N3 N N N 0 -5.651 -3.829 0.695
26 O01 O O1 N N N 0 2.746 -0.802 1.163
27 O18 O O2 N N N 0 -5.954 -1.936 1.907
28 O20 O O3 N N N 0 -4.762 1.196 -2.381
29 O21 O O4 N N N 0 -0.688 -0.144 -1.864
30 O22 O O5 N N N 0 3.855 -0.48 -0.733
31 H1 H H1 N N N 0 0.341 -0.812 0.941
32 H2 H H2 N N N 0 0.391 2.181 0.351
33 H3 H H3 N N N 0 -0.66 1.407 1.561
34 H4 H H4 N N N 0 2.385 1.216 1.537
35 H5 H H5 N N N 0 0.51 2.889 3.269
36 H6 H H6 N N N 0 2.272 2.756 3.477
37 H7 H H7 N N N 0 1.604 3.52 2.015
38 H8 H H8 N N N 0 1.218 -0.702 2.589
39 H9 H H9 N N N 0 2.047 0.29 3.812
40 H10 H H10 N N N 0 0.284 0.423 3.604
41 H11 H H11 N N N 0 -3.038 -0.82 -1.851
42 H12 H H12 N N N 0 -4.642 0.024 0.604
43 H13 H H13 N N N 0 -5.341 -0.642 -0.891
44 H14 H H14 N N N 0 -3.275 -2.073 0.856
45 H15 H H15 N N N 0 -5.294 -4.831 -1.127
46 H16 H H16 N N N 0 -3.981 -4.962 0.08
47 H17 H H17 N N N 0 -4.63 -2.668 -1.794
48 H18 H H18 N N N 0 -3.034 -3.222 -1.188
49 H19 H H19 N N N 0 -2.736 1.578 -2.244
50 S1 S S1 N N Y 0 -3.774 2.439 -0.25
51 H21 H H21 N N N 0 4.898 -1.979 0.275
52 H22 H H22 N N N 0 5.284 -0.316 0.777
53 H23 H H23 N N N 0 5.956 -1.447 -1.982
54 H24 H H24 N N N 0 7.527 -2.673 -0.446
55 H25 H H25 N N N 0 6.634 -0.962 1.497
56 H26 H H26 N N N 0 8.358 -1.435 1.585
57 H30 H H30 N N N 0 9.611 -1.037 -0.776
58 H27 H H27 N N N 0 7.248 1.217 1.082
59 H28 H H28 N N N 0 8.975 0.753 1.169
60 H29 H H29 N N N 0 8.696 1.46 -1.232
61 H31 H H31 N N N 0 8.603 -1.024 -2.273
62 H32 H H32 N N N 0 6.601 0.741 -2.427
63 H33 H H33 N N N 0 6.0 1.21 -0.807
64 H34 H H34 N N N 0 1.562 0.28 -1.477
65 H35 H H35 N N N 0 -2.217 0.025 0.811
66 H36 H H36 N N N 0 -6.372 -4.356 1.074
67 H37 H H37 N N N 0 -5.539 0.916 -1.878
68 O1 O O6 N N Y 0 -4.894 2.083 0.55
69 O2 O O7 N N Y 0 -2.52 2.749 0.342
70 O3 O O8 N N Y 0 -4.197 3.731 -0.934
71 H20 H H20 N N Y 0 -4.35 4.466 -0.325