data_Y7G
#
_chem_comp.id Y7G
_chem_comp.name
'(1S,2S)-2-((S)-2-(((((1R,2S,4S)-bicyclo[2.2.1]heptan-2-yl)methoxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid'
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C22 H37 N3 O8 S'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-02-09
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 503.609
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code Y7G
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag Y
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7LKS
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Y7G C02 C1 C 0 1 N N N N N N 10.962 23.982 26.124 2.728 -0.441 0.002 C02 Y7G 1
Y7G C04 C2 C 0 1 N N S N N N 12.149 22.160 27.285 0.350 0.029 0.248 C04 Y7G 2
Y7G C05 C3 C 0 1 N N N N N N 13.269 21.980 28.280 0.293 1.339 1.037 C05 Y7G 3
Y7G C06 C4 C 0 1 N N N N N N 14.649 22.300 27.754 1.438 1.373 2.052 C06 Y7G 4
Y7G C07 C5 C 0 1 N N N N N N 15.058 21.345 26.654 1.457 2.732 2.754 C07 Y7G 5
Y7G C08 C6 C 0 1 N N N N N N 15.679 22.278 28.912 1.232 0.267 3.089 C08 Y7G 6
Y7G C09 C7 C 0 1 N N N N N N 10.856 21.518 27.785 -0.846 -0.059 -0.665 C09 Y7G 7
Y7G C11 C8 C 0 1 N N S N N N 8.997 19.829 27.634 -3.253 -0.129 -1.036 C11 Y7G 8
Y7G C12 C9 C 0 1 N N N N N N 7.977 19.699 26.438 -4.462 -0.634 -0.245 C12 Y7G 9
Y7G C13 C10 C 0 1 N N S N N N 7.567 21.051 25.868 -4.186 -2.052 0.258 C13 Y7G 10
Y7G C14 C11 C 0 1 N N N N N N 6.573 20.974 24.712 -5.361 -2.568 1.059 C14 Y7G 11
Y7G C16 C12 C 0 1 N N N N N N 5.729 22.669 26.136 -4.738 -4.306 -0.350 C16 Y7G 12
Y7G C17 C13 C 0 1 N N N N N N 6.841 21.956 26.875 -4.077 -3.036 -0.930 C17 Y7G 13
Y7G C19 C14 C 0 1 N N S N N N 9.238 18.443 28.267 -3.561 1.256 -1.609 C19 Y7G 14
Y7G C23 C15 C 0 1 N N N N N N 9.790 25.785 25.243 5.056 -0.959 -0.073 C23 Y7G 15
Y7G C24 C16 C 0 1 N N S N N N 10.056 27.333 25.428 6.225 -0.932 -1.060 C24 Y7G 16
Y7G C25 C17 C 0 1 N N R N N N 8.843 28.243 25.373 7.490 -1.584 -0.422 C25 Y7G 17
Y7G C26 C18 C 0 1 N N N N N N 8.008 27.902 24.134 7.598 -0.930 0.989 C26 Y7G 18
Y7G C27 C19 C 0 1 N N N N N N 8.913 28.183 23.008 8.011 0.533 0.711 C27 Y7G 19
Y7G C28 C20 C 0 1 N N S N N N 10.113 28.886 23.633 8.115 0.625 -0.842 C28 Y7G 20
Y7G C29 C21 C 0 1 N N N N N N 9.531 29.544 24.896 8.627 -0.834 -1.200 C29 Y7G 21
Y7G C30 C22 C 0 1 N N N N N N 10.974 27.809 24.302 6.644 0.526 -1.359 C30 Y7G 22
Y7G N03 N1 N 0 1 N N N N N N 11.929 23.588 26.993 1.577 -0.008 -0.550 N03 Y7G 23
Y7G N10 N2 N 0 1 N N N N N N 10.253 20.441 27.158 -2.091 -0.043 -0.148 N10 Y7G 24
Y7G N15 N3 N 0 1 N N N N N N 5.558 21.895 24.899 -5.651 -3.829 0.695 N15 Y7G 25
Y7G O01 O1 O 0 1 N N N N N N 10.243 23.266 25.433 2.746 -0.802 1.163 O01 Y7G 26
Y7G O18 O2 O 0 1 N N N N N N 6.700 20.200 23.777 -5.954 -1.936 1.907 O18 Y7G 27
Y7G O20 O3 O 0 1 N N N N N N 7.985 17.955 28.749 -4.762 1.196 -2.381 O20 Y7G 28
Y7G O21 O4 O 0 1 N N N N N N 10.330 21.971 28.795 -0.688 -0.144 -1.864 O21 Y7G 29
Y7G O22 O5 O 0 1 N N N N N N 10.776 25.332 26.017 3.855 -0.480 -0.733 O22 Y7G 30
Y7G H1 H1 H 0 1 N N N N N N 12.437 21.654 26.352 0.341 -0.812 0.941 H1 Y7G 31
Y7G H2 H2 H 0 1 N N N N N N 13.071 22.637 29.139 0.391 2.181 0.351 H2 Y7G 32
Y7G H3 H3 H 0 1 N N N N N N 13.265 20.931 28.612 -0.660 1.407 1.561 H3 Y7G 33
Y7G H4 H4 H 0 1 N N N N N N 14.632 23.318 27.338 2.385 1.216 1.537 H4 Y7G 34
Y7G H5 H5 H 0 1 N N N N N N 16.065 21.607 26.296 0.510 2.889 3.269 H5 Y7G 35
Y7G H6 H6 H 0 1 N N N N N N 15.064 20.317 27.045 2.272 2.756 3.477 H6 Y7G 36
Y7G H7 H7 H 0 1 N N N N N N 14.343 21.417 25.822 1.604 3.520 2.015 H7 Y7G 37
Y7G H8 H8 H 0 1 N N N N N N 15.362 22.978 29.699 1.218 -0.702 2.589 H8 Y7G 38
Y7G H9 H9 H 0 1 N N N N N N 15.740 21.262 29.329 2.047 0.290 3.812 H9 Y7G 39
Y7G H10 H10 H 0 1 N N N N N N 16.666 22.578 28.530 0.284 0.423 3.604 H10 Y7G 40
Y7G H11 H11 H 0 1 N N N N N N 8.544 20.482 28.395 -3.038 -0.820 -1.851 H11 Y7G 41
Y7G H12 H12 H 0 1 N N N N N N 7.076 19.181 26.798 -4.642 0.024 0.604 H12 Y7G 42
Y7G H13 H13 H 0 1 N N N N N N 8.446 19.107 25.638 -5.341 -0.642 -0.891 H13 Y7G 43
Y7G H14 H14 H 0 1 N N N N N N 8.470 21.573 25.519 -3.275 -2.073 0.856 H14 Y7G 44
Y7G H15 H15 H 0 1 N N N N N N 6.015 23.707 25.910 -5.294 -4.831 -1.127 H15 Y7G 45
Y7G H16 H16 H 0 1 N N N N N N 4.802 22.665 26.729 -3.981 -4.962 0.080 H16 Y7G 46
Y7G H17 H17 H 0 1 N N N N N N 6.420 21.348 27.689 -4.630 -2.668 -1.794 H17 Y7G 47
Y7G H18 H18 H 0 1 N N N N N N 7.545 22.691 27.293 -3.034 -3.222 -1.188 H18 Y7G 48
Y7G H19 H19 H 0 1 N N N N N N 9.892 18.607 29.136 -2.736 1.578 -2.244 H19 Y7G 49
Y7G S1 S1 S 0 1 N Y N N N N 9.640 17.770 27.539 -3.774 2.439 -0.250 S1 Y7G 50
Y7G H21 H21 H 0 1 N N N N N N 8.799 25.486 25.614 4.898 -1.979 0.275 H21 Y7G 51
Y7G H22 H22 H 0 1 N N N N N N 9.902 25.465 24.196 5.284 -0.316 0.777 H22 Y7G 52
Y7G H23 H23 H 0 1 N N N N N N 10.569 27.480 26.390 5.956 -1.447 -1.982 H23 Y7G 53
Y7G H24 H24 H 0 1 N N N N N N 8.276 28.334 26.311 7.527 -2.673 -0.446 H24 Y7G 54
Y7G H25 H25 H 0 1 N N N N N N 7.110 28.535 24.081 6.634 -0.962 1.497 H25 Y7G 55
Y7G H26 H26 H 0 1 N N N N N N 7.711 26.843 24.142 8.358 -1.435 1.585 H26 Y7G 56
Y7G H27 H27 H 0 1 N N N N N N 8.423 28.836 22.271 7.248 1.217 1.082 H27 Y7G 57
Y7G H28 H28 H 0 1 N N N N N N 9.224 27.248 22.519 8.975 0.753 1.169 H28 Y7G 58
Y7G H29 H29 H 0 1 N N N N N N 10.657 29.568 22.963 8.696 1.460 -1.232 H29 Y7G 59
Y7G H30 H30 H 0 1 N N N N N N 10.302 29.909 25.591 9.611 -1.037 -0.776 H30 Y7G 60
Y7G H31 H31 H 0 1 N N N N N N 8.822 30.356 24.676 8.603 -1.024 -2.273 H31 Y7G 61
Y7G H32 H32 H 0 1 N N N N N N 11.209 26.992 23.604 6.601 0.741 -2.427 H32 Y7G 62
Y7G H33 H33 H 0 1 N N N N N N 11.909 28.232 24.699 6.000 1.210 -0.807 H33 Y7G 63
Y7G H34 H34 H 0 1 N N N N N N 12.500 24.276 27.441 1.562 0.280 -1.477 H34 Y7G 64
Y7G H35 H35 H 0 1 N N N N N N 10.689 20.059 26.343 -2.217 0.025 0.811 H35 Y7G 65
Y7G H36 H36 H 0 1 N N N N N N 4.795 22.020 24.265 -6.372 -4.356 1.074 H36 Y7G 66
Y7G H37 H37 H 0 1 N N N N N N 8.109 17.100 29.144 -5.539 0.916 -1.878 H37 Y7G 67
Y7G O1 O6 O 0 1 N Y N N N N ? ? ? -4.894 2.083 0.550 O1 Y7G 68
Y7G O2 O7 O 0 1 N Y N N N N ? ? ? -2.520 2.749 0.342 O2 Y7G 69
Y7G O3 O8 O 0 1 N Y N N N N ? ? ? -4.197 3.731 -0.934 O3 Y7G 70
Y7G H20 H20 H 0 1 N Y N N N N ? ? ? -4.350 4.466 -0.325 H20 Y7G 71
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Y7G C27 C28 SING N N 1
Y7G C27 C26 SING N N 2
Y7G C28 C30 SING N N 3
Y7G C28 C29 SING N N 4
Y7G O18 C14 DOUB N N 5
Y7G C26 C25 SING N N 6
Y7G C30 C24 SING N N 7
Y7G C14 N15 SING N N 8
Y7G C14 C13 SING N N 9
Y7G C29 C25 SING N N 10
Y7G N15 C16 SING N N 11
Y7G C23 C24 SING N N 12
Y7G C23 O22 SING N N 13
Y7G C25 C24 SING N N 14
Y7G O01 C02 DOUB N N 15
Y7G C13 C12 SING N N 16
Y7G C13 C17 SING N N 17
Y7G O22 C02 SING N N 18
Y7G C02 N03 SING N N 19
Y7G C16 C17 SING N N 20
Y7G C12 C11 SING N N 21
Y7G C07 C06 SING N N 22
Y7G N03 C04 SING N N 23
Y7G N10 C11 SING N N 24
Y7G N10 C09 SING N N 25
Y7G C04 C09 SING N N 26
Y7G C04 C05 SING N N 27
Y7G C11 C19 SING N N 28
Y7G C06 C05 SING N N 29
Y7G C06 C08 SING N N 30
Y7G C09 O21 DOUB N N 31
Y7G C19 O20 SING N N 32
Y7G C04 H1 SING N N 33
Y7G C05 H2 SING N N 34
Y7G C05 H3 SING N N 35
Y7G C06 H4 SING N N 36
Y7G C07 H5 SING N N 37
Y7G C07 H6 SING N N 38
Y7G C07 H7 SING N N 39
Y7G C08 H8 SING N N 40
Y7G C08 H9 SING N N 41
Y7G C08 H10 SING N N 42
Y7G C11 H11 SING N N 43
Y7G C12 H12 SING N N 44
Y7G C12 H13 SING N N 45
Y7G C13 H14 SING N N 46
Y7G C16 H15 SING N N 47
Y7G C16 H16 SING N N 48
Y7G C17 H17 SING N N 49
Y7G C17 H18 SING N N 50
Y7G C19 H19 SING N N 51
Y7G C19 S1 SING N N 52
Y7G C23 H21 SING N N 53
Y7G C23 H22 SING N N 54
Y7G C24 H23 SING N N 55
Y7G C25 H24 SING N N 56
Y7G C26 H25 SING N N 57
Y7G C26 H26 SING N N 58
Y7G C27 H27 SING N N 59
Y7G C27 H28 SING N N 60
Y7G C28 H29 SING N N 61
Y7G C29 H30 SING N N 62
Y7G C29 H31 SING N N 63
Y7G C30 H32 SING N N 64
Y7G C30 H33 SING N N 65
Y7G N03 H34 SING N N 66
Y7G N10 H35 SING N N 67
Y7G N15 H36 SING N N 68
Y7G O20 H37 SING N N 69
Y7G S1 O1 DOUB N N 70
Y7G S1 O2 DOUB N N 71
Y7G S1 O3 SING N N 72
Y7G O3 H20 SING N N 73
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Y7G InChI InChI 1.03 'InChI=1S/C22H37N3O8S/c1-12(2)7-17(25-22(29)33-11-16-9-13-3-4-14(16)8-13)20(27)24-18(21(28)34(30,31)32)10-15-5-6-23-19(15)26/h12-18,21,28H,3-11H2,1-2H3,(H,23,26)(H,24,27)(H,25,29)(H,30,31,32)/t13-,14+,15-,16+,17-,18-,21-/m0/s1'
Y7G InChIKey InChI 1.03 CDEICDIJDMTLMS-JBKSVKCVSA-N
Y7G SMILES_CANONICAL CACTVS 3.385 'CC(C)C[C@H](NC(=O)OC[C@H]1C[C@H]2CC[C@@H]1C2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@@H](O)[S](O)(=O)=O'
Y7G SMILES CACTVS 3.385 'CC(C)C[CH](NC(=O)OC[CH]1C[CH]2CC[CH]1C2)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)[S](O)(=O)=O'
Y7G SMILES_CANONICAL 'OpenEye OEToolkits' 2.0.7 'CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OC[C@H]2C[C@H]3CC[C@@H]2C3'
Y7G SMILES 'OpenEye OEToolkits' 2.0.7 'CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCC2CC3CCC2C3'
#
_pdbx_chem_comp_identifier.comp_id Y7G
_pdbx_chem_comp_identifier.type 'SYSTEMATIC NAME'
_pdbx_chem_comp_identifier.program 'OpenEye OEToolkits'
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
'(2~{S})-2-[[(2~{S})-2-[[(1~{R},2~{S},4~{S})-2-bicyclo[2.2.1]heptanyl]methoxycarbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Y7G 'Create component' 2021-02-09 RCSB
Y7G 'Modify name' 2021-02-09 RCSB
Y7G 'Initial release' 2021-02-17 RCSB
Y7G 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id Y7G
_pdbx_chem_comp_pcm.modified_residue_id CYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category 'Covalent chemical modification'
_pdbx_chem_comp_pcm.position 'Amino-acid side chain'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom C19
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
Y7G C02 C -1.939 -0.836 1
Y7G C04 C -0.549 -3.070 2
Y7G C05 C -0.479 -4.548 3
Y7G C06 C 0.888 -5.195 4
Y7G C07 C 1.016 -6.684 5
Y7G C08 C 2.129 -4.335 6
Y7G C09 C 0.698 -2.351 7
Y7G C11 C 2.018 0.159 8
Y7G C12 C 1.910 1.654 9
Y7G C13 C 3.188 2.481 10
Y7G C14 C 3.275 3.977 11
Y7G C16 C 5.534 3.095 12
Y7G C17 C 4.584 1.934 13
Y7G C19 C 3.374 -0.443 14
Y7G C23 C -3.383 1.342 15
Y7G C24 C -4.714 2.097 16
Y7G C25 C -6.148 1.640 17
Y7G C26 C -7.629 1.413 18
Y7G C27 C -7.931 3.367 19
Y7G C28 C -6.451 3.598 20
Y7G C29 C -6.580 2.575 21
Y7G C30 C -4.945 3.597 22
Y7G N03 N -1.868 -2.350 23
Y7G N10 N 0.706 -0.748 24
Y7G N15 N 4.727 4.356 25
Y7G O01 O -0.667 -0.009 26
Y7G O18 O 2.117 4.928 27
Y7G O20 O 4.600 0.407 28
Y7G O21 O 1.961 -3.167 29
Y7G O22 O -3.301 -0.151 30
Y7G S1 S 3.455 -1.833 31
Y7G O1 O 2.017 -1.773 32
Y7G O2 O 4.947 -1.796 33
Y7G O3 O 3.438 -3.333 34
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
Y7G C27 C28 SINGLE NONE 1
Y7G C27 C26 SINGLE NONE 2
Y7G C28 C30 SINGLE NONE 3
Y7G C28 C29 SINGLE NONE 4
Y7G O18 C14 DOUBLE NONE 5
Y7G C26 C25 SINGLE NONE 6
Y7G C30 C24 SINGLE NONE 7
Y7G C14 N15 SINGLE NONE 8
Y7G C14 C13 SINGLE NONE 9
Y7G C29 C25 SINGLE NONE 10
Y7G N15 C16 SINGLE NONE 11
Y7G C24 C23 SINGLE BEGINDASH 12
Y7G C23 O22 SINGLE NONE 13
Y7G C25 C24 SINGLE NONE 14
Y7G O01 C02 DOUBLE NONE 15
Y7G C13 C12 SINGLE BEGINWEDGE 16
Y7G C13 C17 SINGLE NONE 17
Y7G O22 C02 SINGLE NONE 18
Y7G C02 N03 SINGLE NONE 19
Y7G C16 C17 SINGLE NONE 20
Y7G C11 C12 SINGLE BEGINWEDGE 21
Y7G C07 C06 SINGLE NONE 22
Y7G N03 C04 SINGLE NONE 23
Y7G N10 C11 SINGLE NONE 24
Y7G N10 C09 SINGLE NONE 25
Y7G C04 C09 SINGLE NONE 26
Y7G C04 C05 SINGLE BEGINDASH 27
Y7G C11 C19 SINGLE NONE 28
Y7G C06 C05 SINGLE NONE 29
Y7G C06 C08 SINGLE NONE 30
Y7G C09 O21 DOUBLE NONE 31
Y7G C19 O20 SINGLE BEGINWEDGE 32
Y7G C19 S1 SINGLE NONE 33
Y7G S1 O1 DOUBLE NONE 34
Y7G S1 O2 DOUBLE NONE 35
Y7G S1 O3 SINGLE NONE 36
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
Y7G MurckoScaffold S1 scaffold 'O=C(CNC(=O)OC[C@H]1C[C@H]2CC[C@@H]1C2)NCC[C@@H]1CCNC1=O' InChI=1S/C17H27N3O4/c21-15(18-5-3-12-4-6-19-16(12)22)9-20-17(23)24-10-14-8-11-1-2-13(14)7-11/h11-14H,1-10H2,(H,18,21)(H,19,22)(H,20,23)/t11-,12+,13+,14+/m0/s1 XSGMPXBBRFGBDM-REWJHTLYSA-N
Y7G amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
Y7G cyclohexane F2 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
Y7G cyclopentane F3 fragment C1CCCC1 InChI=1S/C5H10/c1-2-4-5-3-1/h1-5H2 RGSFGYAAUTVSQA-UHFFFAOYSA-N
Y7G peptide F4 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
Y7G C02 S1 1
Y7G C04 S1 1
Y7G C09 S1 1
Y7G C11 S1 1
Y7G C12 S1 1
Y7G C13 S1 1
Y7G C14 S1 1
Y7G C16 S1 1
Y7G C17 S1 1
Y7G C23 S1 1
Y7G C24 S1 1
Y7G C25 S1 1
Y7G C26 S1 1
Y7G C27 S1 1
Y7G C28 S1 1
Y7G C29 S1 1
Y7G C30 S1 1
Y7G N03 S1 1
Y7G N10 S1 1
Y7G N15 S1 1
Y7G O01 S1 1
Y7G O18 S1 1
Y7G O21 S1 1
Y7G O22 S1 1
Y7G N10 F1 1
Y7G C09 F1 1
Y7G O21 F1 1
Y7G C04 F1 1
Y7G N15 F1 2
Y7G C14 F1 2
Y7G O18 F1 2
Y7G C13 F1 2
Y7G C24 F2 1
Y7G C30 F2 1
Y7G C28 F2 1
Y7G C27 F2 1
Y7G C26 F2 1
Y7G C25 F2 1
Y7G C24 F3 1
Y7G C30 F3 1
Y7G C28 F3 1
Y7G C29 F3 1
Y7G C25 F3 1
Y7G C25 F3 2
Y7G C26 F3 2
Y7G C27 F3 2
Y7G C28 F3 2
Y7G C29 F3 2
Y7G O21 F4 1
Y7G C09 F4 1
Y7G C04 F4 1
Y7G N03 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id Y7G
_pdbe_chem_comp_rdkit_properties.exactmw 503.230
_pdbe_chem_comp_rdkit_properties.amw 503.618
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 11
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 15
_pdbe_chem_comp_rdkit_properties.NumHBD 5
_pdbe_chem_comp_rdkit_properties.NumHBA 8
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 34
_pdbe_chem_comp_rdkit_properties.NumAtoms 71
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 12
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 3
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.864
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 3
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 2
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 7
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 252.388
_pdbe_chem_comp_rdkit_properties.tpsa 171.130
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.781
_pdbe_chem_comp_rdkit_properties.CrippenMR 121.885
_pdbe_chem_comp_rdkit_properties.chi0v 16.832
_pdbe_chem_comp_rdkit_properties.chi1v 9.679
_pdbe_chem_comp_rdkit_properties.chi2v 4.029
_pdbe_chem_comp_rdkit_properties.chi3v 4.029
_pdbe_chem_comp_rdkit_properties.chi4v 2.399
_pdbe_chem_comp_rdkit_properties.chi0n 53.016
_pdbe_chem_comp_rdkit_properties.chi1n 26.429
_pdbe_chem_comp_rdkit_properties.chi2n 3.381
_pdbe_chem_comp_rdkit_properties.chi3n 3.381
_pdbe_chem_comp_rdkit_properties.chi4n 2.065
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.920
_pdbe_chem_comp_rdkit_properties.kappa1 6.133
_pdbe_chem_comp_rdkit_properties.kappa2 11.213
_pdbe_chem_comp_rdkit_properties.kappa3 7.047
_pdbe_chem_comp_rdkit_properties.Phi 2.023
#
_pdbe_chem_comp_external_mappings.comp_id Y7G
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PubChem
_pdbe_chem_comp_external_mappings.resource_id 155804609
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
Y7G C02 1.952 -1.560 -0.684 ETKDGv3 1
Y7G C04 -0.412 -2.412 -0.385 ETKDGv3 2
Y7G C05 -1.049 -3.701 0.183 ETKDGv3 3
Y7G C06 -0.625 -4.989 -0.563 ETKDGv3 4
Y7G C07 -1.472 -6.175 -0.081 ETKDGv3 5
Y7G C08 0.866 -5.309 -0.379 ETKDGv3 6
Y7G C09 -1.195 -1.201 0.051 ETKDGv3 7
Y7G C11 -2.359 1.007 -0.624 ETKDGv3 8
Y7G C12 -3.520 0.822 0.387 ETKDGv3 9
Y7G C13 -4.625 1.900 0.267 ETKDGv3 10
Y7G C14 -5.534 1.636 -0.880 ETKDGv3 11
Y7G C16 -6.915 1.230 0.963 ETKDGv3 12
Y7G C17 -5.598 1.848 1.469 ETKDGv3 13
Y7G C19 -1.331 2.073 -0.165 ETKDGv3 14
Y7G C23 3.989 -0.155 -0.693 ETKDGv3 15
Y7G C24 4.920 0.502 0.339 ETKDGv3 16
Y7G C25 4.211 1.178 1.543 ETKDGv3 17
Y7G C26 3.158 2.198 1.066 ETKDGv3 18
Y7G C27 4.019 3.314 0.455 ETKDGv3 19
Y7G C28 5.454 2.820 0.715 ETKDGv3 20
Y7G C29 5.301 2.102 2.037 ETKDGv3 21
Y7G C30 5.759 1.658 -0.248 ETKDGv3 22
Y7G N03 0.968 -2.262 0.082 ETKDGv3 23
Y7G N10 -1.707 -0.277 -0.928 ETKDGv3 24
Y7G N15 -6.831 1.252 -0.482 ETKDGv3 25
Y7G O01 1.824 -1.445 -1.934 ETKDGv3 26
Y7G O18 -5.210 1.763 -2.090 ETKDGv3 27
Y7G O20 -0.610 1.625 0.951 ETKDGv3 28
Y7G O21 -1.373 -0.996 1.282 ETKDGv3 29
Y7G O22 3.044 -0.988 -0.029 ETKDGv3 30
Y7G H1 -0.433 -2.478 -1.495 ETKDGv3 31
Y7G H2 -0.823 -3.796 1.269 ETKDGv3 32
Y7G H3 -2.155 -3.607 0.091 ETKDGv3 33
Y7G H4 -0.822 -4.858 -1.650 ETKDGv3 34
Y7G H5 -1.309 -6.356 1.003 ETKDGv3 35
Y7G H6 -1.205 -7.095 -0.643 ETKDGv3 36
Y7G H7 -2.551 -5.973 -0.253 ETKDGv3 37
Y7G H8 1.492 -4.571 -0.919 ETKDGv3 38
Y7G H9 1.104 -6.307 -0.805 ETKDGv3 39
Y7G H10 1.140 -5.308 0.698 ETKDGv3 40
Y7G H11 -2.798 1.377 -1.574 ETKDGv3 41
Y7G H12 -3.105 0.848 1.417 ETKDGv3 42
Y7G H13 -3.981 -0.182 0.248 ETKDGv3 43
Y7G H14 -4.187 2.917 0.182 ETKDGv3 44
Y7G H15 -7.792 1.820 1.305 ETKDGv3 45
Y7G H16 -7.008 0.178 1.310 ETKDGv3 46
Y7G H17 -5.797 2.884 1.822 ETKDGv3 47
Y7G H18 -5.200 1.266 2.329 ETKDGv3 48
Y7G H19 -1.880 3.004 0.101 ETKDGv3 49
Y7G S1 -0.193 2.496 -1.487 ETKDGv3 50
Y7G H21 3.458 0.617 -1.292 ETKDGv3 51
Y7G H22 4.593 -0.770 -1.394 ETKDGv3 52
Y7G H23 5.603 -0.285 0.732 ETKDGv3 53
Y7G H24 3.835 0.465 2.308 ETKDGv3 54
Y7G H25 2.588 2.588 1.939 ETKDGv3 55
Y7G H26 2.431 1.777 0.344 ETKDGv3 56
Y7G H27 3.810 3.447 -0.630 ETKDGv3 57
Y7G H28 3.840 4.277 0.982 ETKDGv3 58
Y7G H29 6.219 3.626 0.710 ETKDGv3 59
Y7G H30 6.226 1.562 2.350 ETKDGv3 60
Y7G H31 4.967 2.774 2.862 ETKDGv3 61
Y7G H32 6.842 1.407 -0.211 ETKDGv3 62
Y7G H33 5.490 1.912 -1.298 ETKDGv3 63
Y7G H34 1.172 -2.419 1.095 ETKDGv3 64
Y7G H35 -1.629 -0.541 -1.936 ETKDGv3 65
Y7G H36 -7.592 0.952 -1.131 ETKDGv3 66
Y7G H37 -0.159 2.419 1.339 ETKDGv3 67
Y7G O1 0.647 1.304 -1.842 ETKDGv3 68
Y7G O2 -0.957 2.941 -2.702 ETKDGv3 69
Y7G O3 0.815 3.743 -0.981 ETKDGv3 70
Y7G H20 0.204 4.484 -0.739 ETKDGv3 71
#