Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : VQD

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 63


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C10 C C1 N Y N 0 -4.087 3.416 0.107
2 C11 C C2 N Y N 0 -4.699 4.451 -0.531
3 C12 C C3 N Y N 0 -5.693 4.221 -1.481
4 C13 C C4 N Y N 0 -6.081 2.956 -1.797
5 C14 C C5 N Y N 0 -5.471 1.862 -1.159
6 C15 C C6 N Y N 0 -5.845 0.541 -1.459
7 C16 C C7 N Y N 0 -5.234 -0.494 -0.821
8 C18 C C8 N Y N 0 -0.468 -0.531 1.185
9 C19 C C9 N Y N 0 0.239 0.58 0.871
10 C20 C C10 R N N 0 1.334 1.214 1.69
11 C21 C C11 N N N 0 1.087 2.723 1.801
12 C03 C C12 N N N 0 -2.654 -4.243 0.444
13 C04 C C13 N N N 0 -1.716 -3.088 0.677
14 C05 C C14 R N N 0 -2.308 -1.817 0.063
15 C06 C C15 N N N 0 -3.585 -1.435 0.815
16 C07 C C16 N Y N 0 -4.24 -0.264 0.128
17 C08 C C17 N Y N 0 -3.852 1.002 0.445
18 C09 C C18 N Y N 0 -4.46 2.095 -0.194
19 C23 C C19 N N N 0 3.433 3.214 1.672
20 C24 C C20 N N N 0 3.8 1.73 1.554
21 C26 C C21 N N N 0 2.748 0.169 -0.022
22 C27 C C22 N Y N 0 4.081 -0.125 -0.587
23 C28 C C23 N Y N 0 4.202 -0.544 -1.914
24 C29 C C24 N Y N 0 5.448 -0.818 -2.437
25 C30 C C25 N Y N 0 6.58 -0.679 -1.65
26 C32 C C26 N Y N 0 6.466 -0.263 -0.33
27 C34 C C27 N Y N 0 5.224 0.02 0.202
28 F31 F F1 N N N 0 7.798 -0.949 -2.169
29 F33 F F2 N N N 0 7.573 -0.129 0.433
30 N02 N N1 N N N 0 -2.399 -5.443 1.003
31 N17 N N2 N Y N 0 -1.336 -0.726 0.166
32 N25 N N3 N N N 0 2.632 1.003 1.03
33 N36 N N4 N Y N 0 -0.225 1.004 -0.31
34 N37 N N5 N Y N 0 -1.16 0.211 -0.699
35 O01 O O1 N N N 0 -3.281 -6.528 0.783
36 O22 O O2 N N N 0 2.22 3.341 2.417
37 O35 O O3 N N N 0 1.756 -0.341 -0.506
38 O38 O O4 N N N 0 -3.64 -4.094 -0.248
39 H1 H H1 N N N 0 -3.315 3.61 0.837
40 H2 H H2 N N N 0 -4.411 5.465 -0.298
41 H3 H H3 N N N 0 -6.164 5.06 -1.972
42 H4 H H4 N N N 0 -6.853 2.793 -2.535
43 H5 H H5 N N N 0 -6.615 0.348 -2.193
44 H6 H H6 N N N 0 -5.523 -1.508 -1.054
45 H7 H H7 N N N 0 -0.358 -1.141 2.07
46 H8 H H8 N N N 0 1.351 0.77 2.686
47 H9 H H9 N N N 0 0.94 3.142 0.806
48 H10 H H10 N N N 0 0.199 2.903 2.408
49 H11 H H11 N N N 0 -1.577 -2.943 1.749
50 H12 H H12 N N N 0 -0.753 -3.301 0.212
51 H13 H H13 N N N 0 -2.544 -1.997 -0.986
52 H14 H H14 N N N 0 -4.27 -2.283 0.821
53 H15 H H15 N N N 0 -3.335 -1.162 1.84
54 H16 H H16 N N N 0 -3.08 1.164 1.183
55 H17 H H17 N N N 0 4.233 3.747 2.185
56 H18 H H18 N N N 0 3.294 3.635 0.676
57 H19 H H19 N N N 0 4.641 1.613 0.871
58 H20 H H20 N N N 0 4.066 1.338 2.535
59 H21 H H21 N N N 0 3.321 -0.653 -2.529
60 H22 H H22 N N N 0 5.541 -1.142 -3.463
61 H23 H H23 N N N 0 5.136 0.343 1.228
62 H24 H H24 N N N 0 -1.611 -5.562 1.556
63 H25 H H25 N N N 0 -3.015 -7.347 1.225