Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : VGT

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 39


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C7 C C1 N Y N 0 -5.672 -1.356 1.196
2 C8 C C2 N N N 0 -0.013 0.709 -0.029
3 C9 C C3 N Y N 0 2.75 1.131 0.107
4 O1 O O1 N N N 0 7.654 -0.187 -0.509
5 C1 C C4 N N N 0 -2.461 0.208 -0.042
6 C5 C C5 N Y N 0 -6.951 -2.887 -0.129
7 C6 C C6 N Y N 0 -6.464 -2.485 1.101
8 C4 C C7 N Y N 0 -6.646 -2.16 -1.264
9 C3 C C8 N Y N 0 -5.848 -1.034 -1.17
10 C2 C C9 N Y N 0 -5.366 -0.629 0.06
11 O2 O O2 N N N 0 6.399 -2.318 -0.868
12 S1 S S1 N N N 0 6.665 -1.134 -0.13
13 N N N1 N N N 0 7.045 -1.617 1.408
14 C12 C C10 N Y N 0 5.142 -0.253 -0.038
15 C11 C C11 N Y N 0 5.147 1.115 0.171
16 C10 C C12 N Y N 0 3.956 1.809 0.243
17 C13 C C13 N Y N 0 3.944 -0.93 -0.174
18 C14 C C14 N Y N 0 2.748 -0.243 -0.102
19 S S S2 N N N 0 1.227 2.011 0.206
20 C C C15 R N N 0 -1.414 1.321 0.031
21 O O O3 N N N 0 -1.591 2.215 -1.07
22 SE SE SE1 N N N 0 -4.249 0.975 0.195
23 H1 H H1 N N N 0 -5.295 -1.04 2.157
24 H2 H H2 N N N 0 0.135 0.237 -1.0
25 H3 H H3 N N N 0 0.091 -0.038 0.758
26 H4 H H4 N N N 0 -2.402 -0.283 -1.014
27 H5 H H5 N N N 0 -2.272 -0.522 0.745
28 H6 H H6 N N N 0 -7.574 -3.766 -0.202
29 H7 H H7 N N N 0 -6.703 -3.053 1.988
30 H8 H H8 N N N 0 -7.03 -2.471 -2.224
31 H9 H H9 N N N 0 -5.61 -0.466 -2.057
32 H10 H H10 N N N 0 7.578 -1.042 1.979
33 H11 H H11 N N N 0 6.735 -2.475 1.737
34 H12 H H12 N N N 0 6.085 1.64 0.277
35 H13 H H13 N N N 0 3.961 2.876 0.406
36 H14 H H14 N N N 0 3.943 -1.997 -0.337
37 H15 H H15 N N N 0 1.813 -0.772 -0.209
38 H16 H H16 N N N 0 -1.531 1.869 0.966
39 H17 H H17 N N N 0 -1.501 1.795 -1.936