Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : VAO

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 26


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N N N 0 -3.967 -3.327 -0.007
2 C C C N N N 0 -3.535 -2.276 -0.003
3 C1 C C1 N Y N 0 -2.991 -0.952 0.002
4 C6 C C6 N Y N 0 -1.608 -0.765 0.002
5 C5 C C5 N Y N 0 -1.086 0.523 0.007
6 C4 C C4 N Y N 0 -1.95 1.625 0.012
7 O2 O O2 N N N 0 -1.443 2.884 0.016
8 C3 C C3 N Y N 0 -3.324 1.431 0.012
9 C2 C C2 N Y N 0 -3.845 0.156 0.002
10 C7 C C7 N Y N 0 0.382 0.729 0.006
11 N N N N Y N 0 0.872 1.962 0.011
12 C11 C C11 N Y N 0 2.168 2.197 0.011
13 C10 C C10 N Y N 0 3.08 1.159 0.006
14 C9 C C9 N Y N 0 2.613 -0.161 0.001
15 C8 C C8 N Y N 0 1.234 -0.374 0.007
16 C12 C C12 N N N 0 3.558 -1.301 -0.004
17 O1 O O1 N N N 0 3.136 -2.44 -0.008
18 O O O N N N 0 4.886 -1.075 -0.005
19 H6 H H6 N N N 0 -0.946 -1.618 -0.002
20 H2 H H2 N N N 0 -4.915 0.011 -0.001
21 H3 H H3 N N N 0 -3.988 2.283 0.017
22 H8 H H8 N N N 0 0.833 -1.377 0.008
23 H11 H H11 N N N 0 2.523 3.216 0.015
24 H10 H H10 N N N 0 4.14 1.364 0.005
25 H H H N N N 0 5.463 -1.851 -0.008
26 H21 H H21 N N N 0 -1.297 3.252 -0.866