Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : V6W

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 33


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C C C1 N N N 0 -4.249 -0.857 -0.02
2 CA C C2 S N N 0 -2.866 -0.43 -0.44
3 CB C C3 N N N 0 -1.896 -0.621 0.727
4 CG C C4 N Y N 0 -0.494 -0.312 0.271
5 CD1 C C5 N Y N 0 0.417 -1.196 -0.166
6 C24 C C6 N N N 0 2.787 -1.194 -1.006
7 CE2 C C7 N Y N 0 1.437 0.804 -0.269
8 O O O1 N N N 0 -5.065 -0.027 0.305
9 NE1 N N1 N Y N 0 1.577 -0.547 -0.493
10 C25 C C8 N N N 0 3.728 -1.478 0.136
11 O26 O O2 N N N 0 3.42 -1.171 1.263
12 O27 O O3 N N N 0 4.909 -2.071 -0.099
13 CD2 C C9 N Y N 0 0.132 1.012 0.214
14 CE3 C C10 N Y N 0 -0.298 2.303 0.526
15 CZ3 C C11 N Y N 0 0.551 3.36 0.357
16 CH2 C C12 N Y N 0 1.839 3.161 -0.122
17 CZ2 C C13 N Y N 0 2.283 1.895 -0.436
18 N N N2 N N N 0 -2.889 0.985 -0.832
19 HA H H2 N N N 0 -2.541 -1.036 -1.286
20 HB2 H H3 N N N 0 -2.17 0.051 1.541
21 HB3 H H4 N N N 0 -1.946 -1.653 1.076
22 HD1 H H5 N N N 0 0.258 -2.261 -0.248
23 H6 H H6 N N N 0 2.518 -2.13 -1.497
24 H7 H H7 N N N 0 3.275 -0.535 -1.724
25 H H H13 N N N 0 -3.187 1.568 -0.064
26 H8 H H8 N N N 0 5.479 -2.232 0.666
27 HE3 H H9 N N N 0 -1.298 2.465 0.899
28 HZ3 H H10 N N N 0 0.218 4.358 0.598
29 HH2 H H11 N N N 0 2.498 4.006 -0.25
30 HZ2 H H12 N N N 0 3.283 1.752 -0.818
31 H2 H H14 N N Y 0 -1.988 1.279 -1.179
32 OXT O OXT N N Y 0 -4.576 -2.158 -0.011
33 HXT H HXT N N Y 0 -5.476 -2.383 0.262