Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : TYO

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 28


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N N N N N N 0 1.34 1.763 1.021
2 CA C CA S N N 0 2.06 0.637 0.413
3 CB C CB N N N 0 1.32 0.177 -0.844
4 CG C CG N N N 0 -0.03 -0.373 -0.46
5 CD1 C CD1 N N N 0 -0.159 -1.77 -0.043
6 CE1 C CE1 N N N 0 0.923 -2.56 -0.004
7 OE1 O OE1 N N N 0 0.804 -3.854 0.382
8 CD2 C CD2 N N N 0 -1.12 0.423 -0.5
9 CE2 C CE2 N N N 0 -2.43 -0.111 -0.126
10 CZ C CZ N N N 0 -3.512 0.679 -0.166
11 OH O OH N N N 0 -4.725 0.185 0.18
12 OH1 O OH1 N N N 0 -5.817 1.163 0.089
13 C C C N N N 0 3.455 1.072 0.044
14 O O O N N N 0 3.708 2.247 -0.081
15 OXT O OXT N N Y 0 4.416 0.155 -0.146
16 H H HN1 N N N 0 1.277 2.54 0.38
17 H2 H HN2 N N Y 0 0.425 1.48 1.336
18 HA H HA N N N 0 2.114 -0.187 1.125
19 HB1 H HB1 N N N 0 1.189 1.023 -1.518
20 HB2 H HB2 N N N 0 1.9 -0.599 -1.344
21 HD1 H HD1 N N N 0 -1.125 -2.164 0.232
22 HE1 H HE1 N N N 0 1.89 -2.166 -0.279
23 HOE1 H HOE1 N N N 0 1.638 -4.344 0.379
24 HD21 H HD21 N N N 0 -1.025 1.454 -0.807
25 HE2 H HE2 N N N 0 -2.525 -1.142 0.181
26 HZ H HZ N N N 0 -3.417 1.71 -0.474
27 HOH1 H HOH1 N N N 0 -6.683 0.81 0.335
28 HXT H HXT N N Y 0 5.295 0.482 -0.382