Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : T05

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 60


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C4 C C4 N Y N 0 -5.685 1.819 -0.483
2 C13 C C13 N Y N 0 -1.096 -2.776 -1.049
3 C3 C C3 N Y N 0 -5.716 2.526 0.705
4 C5 C C5 N Y N 0 -5.105 0.566 -0.528
5 C12 C C12 N Y N 0 -0.493 -1.665 -1.598
6 C7 C C7 N Y N 0 -4.587 0.728 1.812
7 C10 C C10 N Y N 0 -2.212 -0.255 -0.692
8 C14 C C14 N Y N 0 -2.276 -2.637 -0.314
9 C2 C C2 N Y N 0 -5.168 1.98 1.851
10 C6 C C6 N Y N 0 -4.549 0.019 0.62
11 C9 C C9 N Y N 0 -2.836 -1.363 -0.137
12 C11 C C11 N Y N 0 -1.049 -0.409 -1.421
13 C28 C C28 N N N 0 4.283 -1.049 0.854
14 C29 C C29 N N N 0 5.589 -1.384 0.929
15 C30 C C30 N N N 0 6.57 -0.397 0.67
16 C33 C C33 N N N 0 4.872 1.162 0.287
17 C15 C C15 N N N 0 -2.93 -3.821 0.271
18 C23 C C23 N N N 0 0.725 2.063 1.393
19 C24 C C24 N N N 0 2.212 1.704 1.454
20 C22 C C22 N N N 0 0.386 2.581 -0.008
21 C26 C C26 N N N 0 2.195 1.097 -0.968
22 C25 C C25 S N N 0 2.513 0.596 0.444
23 C1 C C1 N N N 0 -5.204 2.753 3.144
24 C35 C C35 N N N 0 5.997 -2.791 1.284
25 N32 N N32 N N N 0 6.181 0.855 0.354
26 N27 N N27 N N N 0 3.93 0.232 0.525
27 N21 N N21 N N N 0 0.807 1.579 -0.997
28 O31 O O31 N N N 0 7.753 -0.675 0.731
29 O34 O O34 N N N 0 4.536 2.294 -0.004
30 O16 O O16 N N N 0 -2.389 -5.043 0.098
31 O19 O O19 N N N 0 0.517 0.529 -3.211
32 O20 O O20 N N N 0 -1.27 1.995 -2.263
33 O17 O O17 N N N 0 -3.956 -3.696 0.91
34 O8 O O8 N N N 0 -3.978 -1.214 0.579
35 S18 S S18 N N N 0 -0.263 1.003 -2.122
36 H1 H H1 N N N 0 -6.118 2.245 -1.376
37 H2 H H2 N N N 0 -0.659 -3.754 -1.19
38 H3 H H3 N N N 0 -6.169 3.505 0.738
39 H4 H H4 N N N 0 -5.085 0.012 -1.455
40 H5 H H5 N N N 0 0.417 -1.775 -2.169
41 H6 H H6 N N N 0 -4.154 0.304 2.707
42 H7 H H7 N N N 0 -2.639 0.728 -0.559
43 H8 H H8 N N N 0 3.521 -1.789 1.048
44 H9 H H9 N N N 0 0.128 1.176 1.608
45 H10 H H10 N N N 0 0.506 2.836 2.13
46 H11 H H11 N N N 0 2.808 2.585 1.216
47 H12 H H12 N N N 0 2.461 1.359 2.458
48 H13 H H13 N N N 0 -0.688 2.743 -0.087
49 H14 H H14 N N N 0 0.912 3.518 -0.188
50 H15 H H15 N N N 0 2.87 1.912 -1.228
51 H16 H H16 N N N 0 2.314 0.283 -1.683
52 H17 H H17 N N N 0 1.9 -0.277 0.667
53 H18 H H18 N N N 0 -6.119 2.513 3.686
54 H19 H H19 N N N 0 -4.34 2.485 3.752
55 H20 H H20 N N N 0 -5.179 3.822 2.93
56 H21 H H21 N N N 0 6.087 -3.384 0.374
57 H22 H H22 N N N 0 6.956 -2.771 1.801
58 H23 H H23 N N N 0 5.242 -3.235 1.933
59 H24 H H24 N N N 0 6.847 1.537 0.175
60 H25 H H25 N N N 0 -2.854 -5.79 0.501