Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : SEP

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 19


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N N N N N N 0 1.855 0.421 1.751
2 CA C CA S N N 0 0.401 0.62 1.687
3 CB C CB N N N 0 -0.139 0.015 0.391
4 OG O OG N N N 0 0.477 0.655 -0.727
5 C C C N N N 0 -0.249 -0.053 2.867
6 O O O N N N 0 0.254 -1.038 3.354
7 OXT O OXT N N Y 0 -1.389 0.439 3.377
8 P P P N N N 0 -0.135 -0.027 -2.05
9 O1P O O1P N N N 0 -1.601 0.172 -2.074
10 O2P O O2P N N N 0 0.52 0.649 -3.356
11 O3P O O3P N N N 0 0.191 -1.603 -2.041
12 H H H N N N 0 2.237 0.796 0.895
13 H2 H 2HN N N Y 0 2.013 -0.574 1.727
14 HA H HA N N N 0 0.179 1.687 1.711
15 HB2 H 1HB N N N 0 0.082 -1.051 0.367
16 HB3 H 2HB N N N 0 -1.218 0.163 0.344
17 HXT H HXT N N Y 0 -1.807 0.006 4.134
18 HOP2 H 2HOP N N N 0 0.127 0.212 -4.124
19 HOP3 H 3HOP N N N 0 1.154 -1.689 -2.025