Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : SCM

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 47


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O1 O O1 N N N 0 2.09 1.477 -0.607
2 C2 C C2 R N N 0 3.482 1.3 -0.862
3 C2M C C2M N N N 0 3.856 2.008 -2.165
4 C3 C C3 N N N 0 3.801 -0.195 -0.986
5 C4 C C4 N N N 0 3.315 -0.906 0.29
6 O4 O O4 N N N 0 4.002 -1.715 0.866
7 C5 C C5 S N N 0 1.928 -0.507 0.767
8 O5 O O5 N N N 0 1.709 -0.975 2.1
9 C6 C C6 S N N 0 1.826 1.021 0.716
10 O1B O O1B N N N 0 0.967 -1.077 -0.122
11 O2B O O2B N N N 0 0.531 1.439 1.131
12 C7 C C7 R N N 0 -0.325 -0.643 0.307
13 C8 C C8 S N N 0 -1.384 -1.264 -0.608
14 N8 N N8 N N N 0 -1.309 -2.729 -0.516
15 C8M C C8M N N N 0 -1.848 -3.259 -1.775
16 C9 C C9 S N N 0 -2.776 -0.799 -0.178
17 O9 O O9 N N N 0 -3.018 -1.198 1.173
18 C10 C C10 R N N 0 -2.852 0.727 -0.281
19 N10 N N10 N N N 0 -4.191 1.179 0.121
20 C1M C C1M N N N 0 -5.056 1.036 -1.057
21 C11 C C11 S N N 0 -1.804 1.348 0.643
22 O11 O O11 N N N 0 -1.867 2.774 0.578
23 C12 C C12 R N N 0 -0.41 0.882 0.23
24 H2 H H2 N N N 0 4.058 1.726 -0.04
25 H2M1 H 1H2M N N N 0 3.635 3.072 -2.077
26 H2M2 H 2H2M N N N 0 4.919 1.873 -2.361
27 H2M3 H 3H2M N N N 0 3.278 1.584 -2.987
28 H31 H 1H3 N N N 0 3.288 -0.61 -1.854
29 H32 H 2H3 N N N 0 4.877 -0.335 -1.092
30 HO5 H HO5 N N N 0 1.8 -1.937 2.077
31 HN8 H HN8 N N N 0 -0.329 -2.968 -0.497
32 H6 H H6 N N N 0 2.568 1.447 1.391
33 H7 H H7 N N N 0 -0.496 -0.966 1.334
34 H8 H H8 N N N 0 -1.201 -0.956 -1.637
35 H8M1 H 1H8M N N N 0 -2.881 -2.931 -1.895
36 H8M2 H 2H8M N N N 0 -1.251 -2.892 -2.61
37 H8M3 H 3H8M N N N 0 -1.814 -4.348 -1.755
38 H9 H H9 N N N 0 -3.527 -1.245 -0.83
39 HO9 H HO9 N N N 0 -3.902 -0.883 1.403
40 H10 H H10 N N N 0 -2.658 1.032 -1.309
41 HN1 H HN1 N N N 0 -4.118 2.168 0.309
42 H1M1 H 1H1M N N N 0 -4.711 1.705 -1.845
43 H1M2 H 2H1M N N N 0 -5.019 0.006 -1.412
44 H1M3 H 3H1M N N N 0 -6.081 1.29 -0.788
45 H11 H H11 N N N 0 -2.008 1.022 1.663
46 HO1 H HO1 N N N 0 -2.723 3.033 0.945
47 H12 H H12 N N N 0 -0.201 1.236 -0.78