data_SCM
#
_chem_comp.id SCM
_chem_comp.name SPECTINOMYCIN
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C14 H24 N2 O7"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "ACTINOSPECTACIN; ESPECTINOMICINA; CHX-3101"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2000-08-25
_chem_comp.pdbx_modified_date 2020-05-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 332.350
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code SCM
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1FJG
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
SCM O1 O1 O 0 1 N N N N N N 197.762 126.436 -3.695 2.090 1.477 -0.607 O1 SCM 1
SCM C2 C2 C 0 1 N N R N N N 196.714 125.759 -2.981 3.482 1.300 -0.862 C2 SCM 2
SCM C2M C2M C 0 1 N N N N N N 196.814 124.258 -3.233 3.856 2.008 -2.165 C2M SCM 3
SCM C3 C3 C 0 1 N N N N N N 195.299 126.223 -3.395 3.801 -0.195 -0.986 C3 SCM 4
SCM C4 C4 C 0 1 N N N N N N 195.196 127.643 -3.932 3.315 -0.906 0.290 C4 SCM 5
SCM O4 O4 O 0 1 N N N N N N 194.129 128.112 -4.245 4.002 -1.715 0.866 O4 SCM 6
SCM C5 C5 C 0 1 N N S N N N 196.464 128.426 -4.149 1.928 -0.507 0.767 C5 SCM 7
SCM O5 O5 O 0 1 N N N N N N 196.281 129.790 -3.797 1.709 -0.975 2.100 O5 SCM 8
SCM C6 C6 C 0 1 N N S N N N 197.618 127.784 -3.362 1.826 1.021 0.716 C6 SCM 9
SCM O1B O1B O 0 1 N N N N N N 196.792 128.499 -5.554 0.967 -1.077 -0.122 O1B SCM 10
SCM O2B O2B O 0 1 N N N N N N 198.871 128.435 -3.608 0.531 1.439 1.131 O2B SCM 11
SCM C7 C7 C 0 1 N N R N N N 198.023 129.210 -5.754 -0.325 -0.643 0.307 C7 SCM 12
SCM C8 C8 C 0 1 N N S N N N 198.300 129.278 -7.251 -1.384 -1.264 -0.608 C8 SCM 13
SCM N8 N8 N 0 1 N N N N N N 197.160 130.010 -7.883 -1.309 -2.729 -0.516 N8 SCM 14
SCM C8M C8M C 0 1 N N N N N N 197.377 130.272 -9.304 -1.848 -3.259 -1.775 C8M SCM 15
SCM C9 C9 C 0 1 N N S N N N 199.663 129.990 -7.483 -2.776 -0.799 -0.178 C9 SCM 16
SCM O9 O9 O 0 1 N N N N N N 199.612 131.287 -6.973 -3.018 -1.198 1.173 O9 SCM 17
SCM C10 C10 C 0 1 N N R N N N 200.787 129.233 -6.764 -2.852 0.727 -0.281 C10 SCM 18
SCM N10 N10 N 0 1 N N N N N N 202.034 129.911 -6.972 -4.191 1.179 0.121 N10 SCM 19
SCM C1M C1M C 0 1 N N N N N N 202.965 128.940 -7.480 -5.056 1.036 -1.057 C1M SCM 20
SCM C11 C11 C 0 1 N N S N N N 200.489 129.195 -5.260 -1.804 1.348 0.643 C11 SCM 21
SCM O11 O11 O 0 1 N N N N N N 201.530 128.491 -4.610 -1.867 2.774 0.578 O11 SCM 22
SCM C12 C12 C 0 1 N N R N N N 199.158 128.470 -5.028 -0.410 0.882 0.230 C12 SCM 23
SCM H2 H2 H 0 1 N N N N N N 196.852 126.003 -1.917 4.058 1.726 -0.040 H2 SCM 24
SCM H2M1 1H2M H 0 0 N N N N N N 195.942 123.754 -2.792 3.635 3.072 -2.077 H2M1 SCM 25
SCM H2M2 2H2M H 0 0 N N N N N N 197.734 123.870 -2.772 4.919 1.873 -2.361 H2M2 SCM 26
SCM H2M3 3H2M H 0 0 N N N N N N 196.838 124.068 -4.316 3.278 1.584 -2.987 H2M3 SCM 27
SCM H31 1H3 H 0 1 N N N N N N 194.694 126.203 -2.476 3.288 -0.610 -1.854 H31 SCM 28
SCM H32 2H3 H 0 1 N N N N N N 194.950 125.546 -4.188 4.877 -0.335 -1.092 H32 SCM 29
SCM HO5 HO5 H 0 1 N N N N N N 196.240 129.871 -2.851 1.800 -1.937 2.077 HO5 SCM 30
SCM H6 H6 H 0 1 N N N N N N 197.357 127.892 -2.299 2.568 1.447 1.391 H6 SCM 31
SCM H7 H7 H 0 1 N N N N N N 197.954 130.230 -5.348 -0.496 -0.966 1.334 H7 SCM 32
SCM H8 H8 H 0 1 N N N N N N 198.375 128.279 -7.705 -1.201 -0.956 -1.637 H8 SCM 33
SCM HN8 HN8 H 0 1 N N N N N N 196.335 129.453 -7.787 -0.329 -2.968 -0.497 HN8 SCM 34
SCM H8M1 1H8M H 0 0 N N N N N N 196.543 129.852 -9.886 -2.881 -2.931 -1.895 H8M1 SCM 35
SCM H8M2 2H8M H 0 0 N N N N N N 198.320 129.804 -9.623 -1.251 -2.892 -2.610 H8M2 SCM 36
SCM H8M3 3H8M H 0 0 N N N N N N 197.432 131.358 -9.473 -1.814 -4.348 -1.755 H8M3 SCM 37
SCM H9 H9 H 0 1 N N N N N N 199.861 130.013 -8.565 -3.527 -1.245 -0.830 H9 SCM 38
SCM HO9 HO9 H 0 1 N N N N N N 199.600 131.254 -6.024 -3.902 -0.883 1.403 HO9 SCM 39
SCM H10 H10 H 0 1 N N N N N N 200.850 128.210 -7.163 -2.658 1.032 -1.309 H10 SCM 40
SCM HN1 HN1 H 0 1 N N N N N N 201.918 130.656 -7.629 -4.118 2.168 0.309 HN1 SCM 41
SCM H1M1 1H1M H 0 0 N N N N N N 202.518 127.937 -7.420 -4.711 1.705 -1.845 H1M1 SCM 42
SCM H1M2 2H1M H 0 0 N N N N N N 203.887 128.967 -6.880 -5.019 0.006 -1.412 H1M2 SCM 43
SCM H1M3 3H1M H 0 0 N N N N N N 203.203 129.173 -8.528 -6.081 1.290 -0.788 H1M3 SCM 44
SCM H11 H11 H 0 1 N N N N N N 200.422 130.218 -4.860 -2.008 1.022 1.663 H11 SCM 45
SCM HO1 HO1 H 0 1 N N N N N N 202.238 128.333 -5.224 -2.723 3.033 0.945 HO1 SCM 46
SCM H12 H12 H 0 1 N N N N N N 199.233 127.445 -5.421 -0.201 1.236 -0.780 H12 SCM 47
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
SCM O1 C2 SING N N 1
SCM O1 C6 SING N N 2
SCM C2 C2M SING N N 3
SCM C2 C3 SING N N 4
SCM C2 H2 SING N N 5
SCM C2M H2M1 SING N N 6
SCM C2M H2M2 SING N N 7
SCM C2M H2M3 SING N N 8
SCM C3 C4 SING N N 9
SCM C3 H31 SING N N 10
SCM C3 H32 SING N N 11
SCM C4 O4 DOUB N N 12
SCM C4 C5 SING N N 13
SCM C5 O5 SING N N 14
SCM C5 C6 SING N N 15
SCM C5 O1B SING N N 16
SCM O5 HO5 SING N N 17
SCM C6 O2B SING N N 18
SCM C6 H6 SING N N 19
SCM O1B C7 SING N N 20
SCM O2B C12 SING N N 21
SCM C7 C8 SING N N 22
SCM C7 C12 SING N N 23
SCM C7 H7 SING N N 24
SCM C8 N8 SING N N 25
SCM C8 C9 SING N N 26
SCM C8 H8 SING N N 27
SCM N8 C8M SING N N 28
SCM N8 HN8 SING N N 29
SCM C8M H8M1 SING N N 30
SCM C8M H8M2 SING N N 31
SCM C8M H8M3 SING N N 32
SCM C9 O9 SING N N 33
SCM C9 C10 SING N N 34
SCM C9 H9 SING N N 35
SCM O9 HO9 SING N N 36
SCM C10 N10 SING N N 37
SCM C10 C11 SING N N 38
SCM C10 H10 SING N N 39
SCM N10 C1M SING N N 40
SCM N10 HN1 SING N N 41
SCM C1M H1M1 SING N N 42
SCM C1M H1M2 SING N N 43
SCM C1M H1M3 SING N N 44
SCM C11 O11 SING N N 45
SCM C11 C12 SING N N 46
SCM C11 H11 SING N N 47
SCM O11 HO1 SING N N 48
SCM C12 H12 SING N N 49
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
SCM SMILES ACDLabs 10.04 O=C1C2(OC3C(NC)C(O)C(NC)C(O)C3OC2OC(C1)C)O
SCM SMILES_CANONICAL CACTVS 3.341 CN[C@@H]1[C@H](O)[C@H](NC)[C@H]2O[C@]3(O)[C@@H](O[C@H](C)CC3=O)O[C@@H]2[C@H]1O
SCM SMILES CACTVS 3.341 CN[CH]1[CH](O)[CH](NC)[CH]2O[C]3(O)[CH](O[CH](C)CC3=O)O[CH]2[CH]1O
SCM SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C[C@@H]1CC(=O)[C@]2([C@@H](O1)O[C@@H]3[C@H]([C@@H]([C@@H]([C@@H]([C@H]3O2)NC)O)NC)O)O
SCM SMILES "OpenEye OEToolkits" 1.5.0 CC1CC(=O)C2(C(O1)OC3C(C(C(C(C3O2)NC)O)NC)O)O
SCM InChI InChI 1.03 InChI=1S/C14H24N2O7/c1-5-4-6(17)14(20)13(21-5)22-12-10(19)7(15-2)9(18)8(16-3)11(12)23-14/h5,7-13,15-16,18-20H,4H2,1-3H3/t5-,7-,8+,9+,10+,11-,12-,13+,14+/m1/s1
SCM InChIKey InChI 1.03 UNFWWIHTNXNPBV-WXKVUWSESA-N
#
_pdbx_chem_comp_identifier.comp_id SCM
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program ACDLabs
_pdbx_chem_comp_identifier.program_version 10.04
_pdbx_chem_comp_identifier.identifier
(2R,4aR,5aR,6S,7S,8R,9S,9aR,10aS)-4a,7,9-trihydroxy-2-methyl-6,8-bis(methylamino)decahydro-4H-pyrano[2,3-b][1,4]benzodioxin-4-one
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
SCM 'Create component' 2000-08-25 RCSB
SCM 'Modify descriptor' 2011-06-04 RCSB
SCM 'Modify synonyms' 2020-05-27 PDBE
#
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1 SCM ACTINOSPECTACIN ? ?
2 SCM ESPECTINOMICINA ? ?
3 SCM CHX-3101 ? ?
#
_pdbe_chem_comp_drugbank_details.comp_id SCM
_pdbe_chem_comp_drugbank_details.drugbank_id DB00919
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name Spectinomycin
_pdbe_chem_comp_drugbank_details.description
'An antibiotic produced by Streptomyces spectabilis. It is active against gram-negative bacteria and used for the treatment of gonorrhea.'
_pdbe_chem_comp_drugbank_details.cas_number 1695-77-8
_pdbe_chem_comp_drugbank_details.mechanism_of_action
'Spectinomycin is an inhibitor of protein synthesis in the bacterial cell; the site of action is the 30S ribosomal subunit. It is bactericidal in its action.'
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
SCM ACTINOSPECTACIN wwPDB ?
SCM ESPECTINOMICINA wwPDB ?
SCM CHX-3101 wwPDB ?
SCM SCM DrugBank ?
SCM Spectinomycin DrugBank ?
SCM Spectinomycinum DrugBank ?
SCM Actinospectacin DrugBank 'International brand'
SCM Spectam DrugBank 'International brand'
SCM Togamycin DrugBank 'International brand'
#
_pdbe_chem_comp_drugbank_classification.comp_id SCM
_pdbe_chem_comp_drugbank_classification.drugbank_id DB00919
_pdbe_chem_comp_drugbank_classification.parent 1,4-dioxanes
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class Dioxanes
_pdbe_chem_comp_drugbank_classification.superclass 'Organoheterocyclic compounds'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as 1,4-dioxanes. These are organic compounds containing 1,4-dioxane, an aliphatic six-member ring with two oxygen atoms in ring positions 1 and 4.'
#
_pdbe_chem_comp_drugbank_targets.comp_id SCM
_pdbe_chem_comp_drugbank_targets.drugbank_id DB00919
_pdbe_chem_comp_drugbank_targets.name '30S ribosomal protein S12'
_pdbe_chem_comp_drugbank_targets.organism 'Escherichia coli (strain K12)'
_pdbe_chem_comp_drugbank_targets.uniprot_id P0A7S3
_pdbe_chem_comp_drugbank_targets.pharmacologically_active yes
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
SCM O1 O 12.237 -1.707 1
SCM C2 C 13.596 -0.936 2
SCM C2M C 14.892 -1.691 3
SCM C3 C 13.596 0.627 4
SCM C4 C 12.237 1.397 5
SCM O4 O 12.220 2.897 6
SCM C5 C 10.896 0.595 7
SCM O5 O 10.896 2.095 8
SCM C6 C 10.896 -0.905 9
SCM O1B O 9.597 1.345 10
SCM O2B O 9.597 -1.655 11
SCM C7 C 8.298 0.595 12
SCM C8 C 6.957 1.397 13
SCM N8 N 6.975 2.897 14
SCM C8M C 5.684 3.662 15
SCM C9 C 5.598 0.627 16
SCM O9 O 4.302 1.381 17
SCM C10 C 5.598 -0.936 18
SCM N10 N 4.302 -1.691 19
SCM C1M C 3.000 -0.946 20
SCM C11 C 6.957 -1.707 21
SCM O11 O 6.975 -3.207 22
SCM C12 C 8.298 -0.905 23
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
SCM O1 C2 SINGLE NONE 1
SCM O1 C6 SINGLE NONE 2
SCM C2 C2M SINGLE BEGINWEDGE 3
SCM C2 C3 SINGLE NONE 4
SCM C3 C4 SINGLE NONE 5
SCM C4 O4 DOUBLE NONE 6
SCM C4 C5 SINGLE NONE 7
SCM C5 O5 SINGLE BEGINDASH 8
SCM C5 C6 SINGLE NONE 9
SCM C5 O1B SINGLE NONE 10
SCM C6 O2B SINGLE NONE 11
SCM O1B C7 SINGLE NONE 12
SCM O2B C12 SINGLE NONE 13
SCM C7 C8 SINGLE NONE 14
SCM C7 C12 SINGLE NONE 15
SCM C8 N8 SINGLE BEGINDASH 16
SCM C8 C9 SINGLE NONE 17
SCM N8 C8M SINGLE NONE 18
SCM C9 O9 SINGLE BEGINDASH 19
SCM C9 C10 SINGLE NONE 20
SCM C10 N10 SINGLE BEGINDASH 21
SCM C10 C11 SINGLE NONE 22
SCM N10 C1M SINGLE NONE 23
SCM C11 O11 SINGLE BEGINWEDGE 24
SCM C11 C12 SINGLE NONE 25
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
SCM MurckoScaffold S1 scaffold 'O=C1CCO[C@H]2O[C@@H]3CCCC[C@H]3OC12' InChI=1S/C11H16O4/c12-7-5-6-13-11-10(7)14-8-3-1-2-4-9(8)15-11/h8-11H,1-6H2/t8-,9-,10+,11+/m1/s1 KYYXCNJLXDEJHO-ZNSHCXBVSA-N
SCM cyclohexane F1 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
SCM pyranose F2 fragment OC1CCCCO1 InChI=1S/C5H10O2/c6-5-3-1-2-4-7-5/h5-6H,1-4H2 CELWCAITJAEQNL-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
SCM O1 S1 1
SCM C2 S1 1
SCM C3 S1 1
SCM C4 S1 1
SCM O4 S1 1
SCM C5 S1 1
SCM C6 S1 1
SCM O1B S1 1
SCM O2B S1 1
SCM C7 S1 1
SCM C8 S1 1
SCM C9 S1 1
SCM C10 S1 1
SCM C11 S1 1
SCM C12 S1 1
SCM C7 F1 1
SCM C8 F1 1
SCM C9 F1 1
SCM C10 F1 1
SCM C11 F1 1
SCM C12 F1 1
SCM C3 F2 1
SCM C2 F2 1
SCM O1 F2 1
SCM C6 F2 1
SCM C5 F2 1
SCM C4 F2 1
SCM O2B F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id SCM
_pdbe_chem_comp_rdkit_properties.exactmw 332.158
_pdbe_chem_comp_rdkit_properties.amw 332.353
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 9
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 8
_pdbe_chem_comp_rdkit_properties.NumHBD 5
_pdbe_chem_comp_rdkit_properties.NumHBA 9
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 23
_pdbe_chem_comp_rdkit_properties.NumAtoms 47
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.929
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 3
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 9
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 167.546
_pdbe_chem_comp_rdkit_properties.tpsa 129.510
_pdbe_chem_comp_rdkit_properties.CrippenClogP -2.926
_pdbe_chem_comp_rdkit_properties.CrippenMR 76.364
_pdbe_chem_comp_rdkit_properties.chi0v 10.752
_pdbe_chem_comp_rdkit_properties.chi1v 5.686
_pdbe_chem_comp_rdkit_properties.chi2v 2.926
_pdbe_chem_comp_rdkit_properties.chi3v 2.926
_pdbe_chem_comp_rdkit_properties.chi4v 1.903
_pdbe_chem_comp_rdkit_properties.chi0n 34.752
_pdbe_chem_comp_rdkit_properties.chi1n 17.305
_pdbe_chem_comp_rdkit_properties.chi2n 2.926
_pdbe_chem_comp_rdkit_properties.chi3n 2.926
_pdbe_chem_comp_rdkit_properties.chi4n 1.903
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.650
_pdbe_chem_comp_rdkit_properties.kappa1 4.358
_pdbe_chem_comp_rdkit_properties.kappa2 6.012
_pdbe_chem_comp_rdkit_properties.kappa3 2.518
_pdbe_chem_comp_rdkit_properties.Phi 1.139
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
SCM UniChem DrugBank DB00919
SCM UniChem 'Guide to Pharmacology' 11127
SCM UniChem 'KEGG LIGAND' C02078
SCM UniChem ChEBI 9215
SCM UniChem ZINC ZINC000053006806
SCM UniChem fdasrs 93AKI1U6QF
SCM UniChem PharmGKB PA164781342
SCM UniChem HMDB HMDB0015055
SCM UniChem NMRShiftDB 60027647
SCM UniChem LINCS LSM-5298
SCM UniChem 'EPA CompTox Dashboard' DTXSID9023592
SCM UniChem DrugCentral 2468
SCM UniChem MetaboLights MTBLC9215
SCM UniChem BRENDA 15967
SCM UniChem BRENDA 266336
SCM UniChem BRENDA 266337
SCM UniChem ChemicalBook CB8197632
SCM UniChem ClinicalTrials SPECTINOMYCIN
SCM UniChem ClinicalTrials 'SPECTINOMYCIN HYDROCHLORIDE'
SCM UniChem rxnorm SPECTINOMYCIN
SCM UniChem rxnorm 'SPECTINOMYCIN HYDROCHLORIDE'
SCM UniChem 'Probes And Drugs' PD009642
SCM UniChem Nikkaji J7.562K
SCM UniChem eMolecules 1934872
SCM UniChem eMolecules 30151837
SCM UniChem eMolecules 30157345
SCM UniChem SureChEMBL SCHEMBL3533
SCM UniChem 'PubChem TPHARMA' 14753260
SCM UniChem 'PubChem TPHARMA' 14875285
SCM UniChem PubChem 15541
SCM UniChem Mcule MCULE-1267098066
SCM UniChem ACTor 1695-77-8
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
SCM O1 2.823 -0.791 -0.255 ETKDGv3 1
SCM C2 4.109 -0.196 -0.228 ETKDGv3 2
SCM C2M 4.958 -0.906 0.824 ETKDGv3 3
SCM C3 4.001 1.302 0.096 ETKDGv3 4
SCM C4 3.013 1.950 -0.828 ETKDGv3 5
SCM O4 3.192 3.103 -1.193 ETKDGv3 6
SCM C5 1.739 1.220 -1.182 ETKDGv3 7
SCM O5 1.231 1.717 -2.401 ETKDGv3 8
SCM C6 2.066 -0.292 -1.349 ETKDGv3 9
SCM O1B 0.811 1.421 -0.125 ETKDGv3 10
SCM O2B 0.881 -1.054 -1.499 ETKDGv3 11
SCM C7 -0.367 0.659 -0.325 ETKDGv3 12
SCM C8 -1.355 0.935 0.842 ETKDGv3 13
SCM N8 -1.750 2.361 0.844 ETKDGv3 14
SCM C8M -2.368 2.761 2.113 ETKDGv3 15
SCM C9 -2.613 0.023 0.742 ETKDGv3 16
SCM O9 -3.485 0.475 -0.266 ETKDGv3 17
SCM C10 -2.224 -1.473 0.588 ETKDGv3 18
SCM N10 -3.397 -2.379 0.612 ETKDGv3 19
SCM C1M -4.242 -2.375 -0.589 ETKDGv3 20
SCM C11 -1.242 -1.716 -0.588 ETKDGv3 21
SCM O11 -0.841 -3.064 -0.604 ETKDGv3 22
SCM C12 0.008 -0.839 -0.406 ETKDGv3 23
SCM H2 4.627 -0.327 -1.207 ETKDGv3 24
SCM H2M1 5.976 -0.463 0.863 ETKDGv3 25
SCM H2M2 5.052 -1.983 0.566 ETKDGv3 26
SCM H2M3 4.486 -0.822 1.827 ETKDGv3 27
SCM H31 3.650 1.446 1.141 ETKDGv3 28
SCM H32 4.999 1.782 -0.014 ETKDGv3 29
SCM HO5 0.845 2.614 -2.218 ETKDGv3 30
SCM H6 2.641 -0.426 -2.295 ETKDGv3 31
SCM H7 -0.858 0.970 -1.275 ETKDGv3 32
SCM H8 -0.819 0.691 1.789 ETKDGv3 33
SCM HN8 -0.895 2.955 0.739 ETKDGv3 34
SCM H8M1 -2.497 3.864 2.128 ETKDGv3 35
SCM H8M2 -1.732 2.476 2.980 ETKDGv3 36
SCM H8M3 -3.377 2.312 2.215 ETKDGv3 37
SCM H9 -3.164 0.097 1.704 ETKDGv3 38
SCM HO9 -3.037 0.365 -1.142 ETKDGv3 39
SCM H10 -1.648 -1.713 1.513 ETKDGv3 40
SCM HN1 -3.057 -3.357 0.763 ETKDGv3 41
SCM H1M1 -4.856 -1.456 -0.636 ETKDGv3 42
SCM H1M2 -4.956 -3.224 -0.530 ETKDGv3 43
SCM H1M3 -3.656 -2.504 -1.519 ETKDGv3 44
SCM H11 -1.705 -1.440 -1.562 ETKDGv3 45
SCM HO1 -1.469 -3.551 -1.198 ETKDGv3 46
SCM H12 0.503 -1.147 0.546 ETKDGv3 47
#