Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : S7Y

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 40


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N N N1 N N N 0 1.184 0.268 1.201
2 C C C1 N Y N 0 -1.153 1.289 0.036
3 O O O1 N N N 0 0.404 -1.813 0.891
4 C1 C C2 N N N 0 0.032 2.214 0.169
5 C10 C C3 N Y N 0 -4.508 0.191 -0.659
6 C11 C C4 N Y N 0 3.403 -0.123 0.299
7 C12 C C5 N Y N 0 -4.178 -2.134 -0.058
8 C13 C C6 N Y N 0 -4.983 -1.101 -0.508
9 C14 C C7 N Y N 0 3.432 -0.963 -0.753
10 C15 C C8 N N N 0 2.582 -2.196 -0.926
11 C16 C C9 N Y N 0 4.896 0.573 -1.141
12 C2 C C10 N Y N 0 -1.047 -0.048 0.357
13 C3 C C11 N N N 0 0.937 1.701 1.29
14 C4 C C12 N Y N 0 -2.348 -0.64 0.124
15 C5 C C13 N Y N 0 -3.172 0.419 -0.337
16 C6 C C14 N N N 0 0.224 -0.611 0.832
17 C7 C C15 N N N 0 2.522 -0.238 1.517
18 C8 C C16 N N N 0 -2.89 2.874 -0.798
19 C9 C C17 N Y N 0 -2.848 -1.935 0.268
20 N1 N N2 N Y N 0 -2.409 1.557 -0.374
21 N2 N N3 N Y N 0 4.332 0.851 0.054
22 N3 N N4 N Y N 0 4.349 -0.511 -1.62
23 H3 H H3 N N N 0 0.588 2.232 -0.769
24 H4 H H4 N N N 0 -0.314 3.219 0.407
25 H5 H H5 N N N 0 -5.146 0.988 -1.011
26 H6 H H6 N N N 0 -4.6 -3.123 0.04
27 H7 H H7 N N N 0 -6.014 -1.309 -0.749
28 H8 H H8 N N N 0 1.617 -1.916 -1.349
29 H9 H H9 N N N 0 3.085 -2.892 -1.597
30 H10 H H10 N N N 0 2.429 -2.671 0.043
31 H11 H H11 N N N 0 5.667 1.156 -1.624
32 H12 H H12 N N N 0 0.466 1.919 2.249
33 H13 H H13 N N N 0 1.89 2.227 1.241
34 H15 H H15 N N N 0 2.949 0.347 2.331
35 H16 H H16 N N N 0 2.453 -1.284 1.818
36 H20 H H20 N N N 0 -2.226 -2.745 0.619
37 H17 H H17 N N N 0 -2.739 2.988 -1.872
38 H18 H H18 N N N 0 -3.952 2.964 -0.569
39 H19 H H19 N N N 0 -2.337 3.65 -0.269
40 H21 H H21 N N N 0 4.547 1.6 0.632