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PDBeChem : Atoms of Molecule
Molecule : RPI
Atoms of a chemical element, that composes a molecule
Total Number of Atoms: 31
Record |
Atom Name |
Symbol |
PDB Name |
Stereochemistry |
Is Aromatic |
Is Leaving Atom |
Charge |
X-Coordinate |
Y-Coordinate |
Z-Coordinate |
1 |
P |
P |
P |
N |
N |
N |
0 |
-4.405 |
-0.075 |
-0.064 |
2 |
N |
N |
N |
N |
N |
N |
0 |
4.47 |
-1.803 |
0.153 |
3 |
CA |
C |
CA |
S |
N |
N |
0 |
4.399 |
-0.449 |
-0.413 |
4 |
CB |
C |
CB |
N |
N |
N |
0 |
3.151 |
0.26 |
0.115 |
5 |
CG |
C |
CG |
N |
N |
N |
0 |
1.901 |
-0.458 |
-0.398 |
6 |
CD |
C |
CD |
N |
N |
N |
0 |
0.652 |
0.25 |
0.13 |
7 |
NE |
N |
NE |
N |
N |
N |
0 |
-0.544 |
-0.438 |
-0.362 |
8 |
CZ |
C |
CZ |
N |
N |
N |
0 |
-1.793 |
0.022 |
-0.016 |
9 |
NH1 |
N |
NH1 |
N |
N |
N |
0 |
-1.912 |
1.07 |
0.75 |
10 |
NH2 |
N |
NH2 |
N |
N |
N |
0 |
-2.915 |
-0.623 |
-0.477 |
11 |
O1P |
O |
O1P |
N |
N |
N |
0 |
-4.584 |
1.437 |
-0.586 |
12 |
O2P |
O |
O2P |
N |
N |
N |
0 |
-5.437 |
-0.936 |
-0.683 |
13 |
O3P |
O |
O3P |
N |
N |
N |
0 |
-4.565 |
-0.112 |
1.538 |
14 |
C |
C |
C |
N |
N |
N |
0 |
5.626 |
0.328 |
-0.01 |
15 |
O |
O |
O |
N |
N |
N |
0 |
6.282 |
-0.028 |
0.94 |
16 |
OXT |
O |
OXT |
N |
N |
Y |
0 |
5.99 |
1.417 |
-0.706 |
17 |
H |
H |
H1 |
N |
N |
N |
0 |
5.251 |
-2.314 |
-0.23 |
18 |
H2 |
H |
H2 |
N |
N |
Y |
0 |
4.517 |
-1.772 |
1.16 |
19 |
HA |
H |
H4 |
N |
N |
N |
0 |
4.35 |
-0.511 |
-1.5 |
20 |
H5 |
H |
H5 |
N |
N |
N |
0 |
3.157 |
0.244 |
1.205 |
21 |
H6 |
H |
H6 |
N |
N |
N |
0 |
3.144 |
1.293 |
-0.233 |
22 |
H7 |
H |
H7 |
N |
N |
N |
0 |
1.895 |
-0.442 |
-1.488 |
23 |
H8 |
H |
H8 |
N |
N |
N |
0 |
1.907 |
-1.491 |
-0.05 |
24 |
H9 |
H |
H9 |
N |
N |
N |
0 |
0.659 |
0.234 |
1.219 |
25 |
H10 |
H |
H10 |
N |
N |
N |
0 |
0.646 |
1.283 |
-0.219 |
26 |
H11 |
H |
H11 |
N |
N |
N |
0 |
-0.456 |
-1.218 |
-0.932 |
27 |
H12 |
H |
H12 |
N |
N |
N |
0 |
-1.12 |
1.526 |
1.075 |
28 |
H14 |
H |
H14 |
N |
N |
N |
0 |
-2.827 |
-1.403 |
-1.047 |
29 |
H15 |
H |
H15 |
N |
N |
N |
0 |
-3.939 |
2.059 |
-0.221 |
30 |
H16 |
H |
H16 |
N |
N |
N |
0 |
-5.424 |
0.199 |
1.854 |
31 |
HXT |
H |
H17 |
N |
N |
Y |
0 |
6.784 |
1.882 |
-0.41 |
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