Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : RPI

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 31


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 P P P N N N 0 -4.405 -0.075 -0.064
2 N N N N N N 0 4.47 -1.803 0.153
3 CA C CA S N N 0 4.399 -0.449 -0.413
4 CB C CB N N N 0 3.151 0.26 0.115
5 CG C CG N N N 0 1.901 -0.458 -0.398
6 CD C CD N N N 0 0.652 0.25 0.13
7 NE N NE N N N 0 -0.544 -0.438 -0.362
8 CZ C CZ N N N 0 -1.793 0.022 -0.016
9 NH1 N NH1 N N N 0 -1.912 1.07 0.75
10 NH2 N NH2 N N N 0 -2.915 -0.623 -0.477
11 O1P O O1P N N N 0 -4.584 1.437 -0.586
12 O2P O O2P N N N 0 -5.437 -0.936 -0.683
13 O3P O O3P N N N 0 -4.565 -0.112 1.538
14 C C C N N N 0 5.626 0.328 -0.01
15 O O O N N N 0 6.282 -0.028 0.94
16 OXT O OXT N N Y 0 5.99 1.417 -0.706
17 H H H1 N N N 0 5.251 -2.314 -0.23
18 H2 H H2 N N Y 0 4.517 -1.772 1.16
19 HA H H4 N N N 0 4.35 -0.511 -1.5
20 H5 H H5 N N N 0 3.157 0.244 1.205
21 H6 H H6 N N N 0 3.144 1.293 -0.233
22 H7 H H7 N N N 0 1.895 -0.442 -1.488
23 H8 H H8 N N N 0 1.907 -1.491 -0.05
24 H9 H H9 N N N 0 0.659 0.234 1.219
25 H10 H H10 N N N 0 0.646 1.283 -0.219
26 H11 H H11 N N N 0 -0.456 -1.218 -0.932
27 H12 H H12 N N N 0 -1.12 1.526 1.075
28 H14 H H14 N N N 0 -2.827 -1.403 -1.047
29 H15 H H15 N N N 0 -3.939 2.059 -0.221
30 H16 H H16 N N N 0 -5.424 0.199 1.854
31 HXT H H17 N N Y 0 6.784 1.882 -0.41