Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : PLV

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 42


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N N N N N N 0 1.941 -0.243 0.049
2 CA C CA S N N 0 2.87 0.685 0.708
3 CB C CB N N N 0 4.129 0.84 -0.147
4 OG O OG N N N 0 3.789 1.463 -1.387
5 C C C N N N 0 2.206 2.028 0.873
6 O O O N N N 0 2.871 3.038 1.454
7 OXT O OXT N N N 0 1.076 2.195 0.481
8 N1 N N1 N Y N 0 -1.667 -3.539 -0.615
9 C2 C C2 N Y N 0 -0.493 -3.988 -0.218
10 C2A C C2A N N N 0 -0.159 -5.449 -0.381
11 C3 C C3 N Y N 0 0.438 -3.13 0.349
12 O3 O O3 N N N 0 1.647 -3.598 0.758
13 C4 C C4 N Y N 0 0.117 -1.785 0.494
14 C4A C C4A N N N 0 1.098 -0.818 1.105
15 C5 C C5 N Y N 0 -1.13 -1.356 0.069
16 C6 C C6 N Y N 0 -2.003 -2.27 -0.492
17 C5A C C5A N N N 0 -1.526 0.092 0.204
18 O4P O O4P N N N 0 -2.844 0.276 -0.316
19 P P P N N N 0 -3.2 1.836 -0.14
20 O1P O O1P N N N 0 -2.216 2.718 -1.061
21 O2P O O2P N N N 0 -4.725 2.093 -0.586
22 O3P O O3P N N N 0 -3.028 2.225 1.277
23 C7 C C7 N N N 0 5.0 1.579 -2.137
24 HN H HN N N N 0 1.336 0.317 -0.533
25 HA H HA N N N 0 3.142 0.292 1.688
26 H2A1 H 1H2A N N N 0 -0.468 -5.994 0.511
27 HB1 H 1HB N N N 0 4.56 -0.143 -0.341
28 HB2 H 2HB N N N 0 4.855 1.457 0.382
29 HO H HO N N N 0 2.445 3.9 1.56
30 H2A2 H 2H2A N N N 0 -0.683 -5.846 -1.25
31 H2A3 H 3H2A N N N 0 0.916 -5.562 -0.523
32 HO3 H HO3 N N N 0 1.545 -3.869 1.681
33 H4A1 H 1H4A N N N 0 1.725 -1.343 1.825
34 H4A2 H 2H4A N N N 0 0.555 -0.019 1.611
35 H6 H H6 N N N 0 -2.975 -1.941 -0.83
36 H5A1 H 1H5A N N N 0 -1.507 0.377 1.256
37 H5A2 H 2H5A N N N 0 -0.825 0.714 -0.354
38 H1P H H1P N N N 0 -2.359 2.434 -1.974
39 H2P H H2P N N N 0 -4.897 3.037 -0.466
40 H71 H 1H7 N N N 0 5.714 2.187 -1.582
41 H72 H 2H7 N N N 0 5.42 0.587 -2.305
42 H73 H 3H7 N N N 0 4.789 2.051 -3.097