Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : P1V

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 31


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C4 C C4 N N N 0 1.467 -0.253 1.192
2 C5 C C5 N N N 0 0.352 0.106 0.208
3 C6 C C6 N N N 0 -1.006 -0.211 0.837
4 C7 C C7 N N N 0 -2.121 0.149 -0.147
5 N1 N N1 N Y N 0 4.635 1.058 -0.054
6 N2 N N2 N Y N 0 3.437 1.199 0.665
7 C3 C C3 N N N 0 5.72 -0.811 -1.392
8 N3 N N3 N Y N 0 3.53 -0.779 -0.167
9 N N N N N N 0 -3.596 -1.618 0.691
10 CA C CA S N N 0 -3.479 -0.168 0.483
11 C C C N N N 0 -4.58 0.298 -0.435
12 O O O N N N 0 -5.146 -0.494 -1.15
13 C1 C C1 N Y N 0 4.635 -0.192 -0.548
14 C2 C C2 N Y N 0 2.804 0.06 0.572
15 H1 H H1 N N N 0 1.346 0.328 2.106
16 H17 H H2 N N N 0 1.415 -1.316 1.428
17 H3 H H3 N N N 0 0.404 1.169 -0.028
18 H4 H H4 N N N 0 0.473 -0.475 -0.706
19 H5 H H5 N N N 0 -1.058 -1.273 1.073
20 H6 H H6 N N N 0 -1.127 0.371 1.752
21 H7 H H7 N N N 0 -2.069 1.212 -0.382
22 H8 H H8 N N N 0 -2.0 -0.433 -1.061
23 H9 H H9 N N N 0 5.324 1.731 -0.175
24 H10 H H10 N N N 0 6.452 -1.294 -0.745
25 H11 H H11 N N N 0 5.282 -1.55 -2.062
26 H12 H H12 N N N 0 6.211 -0.034 -1.979
27 H H H13 N N N 0 -4.457 -1.847 1.164
28 H2 H H14 N N Y 0 -3.521 -2.116 -0.184
29 HA H H16 N N N 0 -3.563 0.344 1.441
30 OXT O O1 N N Y 0 -4.93 1.594 -0.458
31 HXT H H15 N N Y 0 -5.641 1.845 -1.063