Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : OMP

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 37


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 P P P N N N 0 -4.583 -0.715 0.387
2 O1P O O1P N N N 0 -5.59 0.207 -0.183
3 O2P O O2P N N N 0 -5.089 -1.244 1.821
4 O3P O O3P N N N 0 -4.38 -1.967 -0.605
5 O5' O O5* N N N 0 -3.184 0.061 0.565
6 C5' C C5* N N N 0 -2.527 0.738 -0.509
7 C4' C C4* R N N 0 -1.229 1.365 0.002
8 O4' O O4* N N N 0 -0.302 0.332 0.377
9 C3' C C3* S N N 0 -0.567 2.188 -1.121
10 O3' O O3* N N N 0 -0.442 3.557 -0.731
11 C2' C C2* R N N 0 0.83 1.543 -1.291
12 O2' O O2* N N N 0 1.833 2.543 -1.481
13 C1' C C1* R N N 0 1.021 0.82 0.067
14 N1 N N1 N N N 0 1.962 -0.295 -0.071
15 C2 C C2 N N N 0 1.649 -1.328 -0.871
16 O2 O O2 N N N 0 0.589 -1.315 -1.465
17 N3 N N3 N N N 0 2.478 -2.374 -1.031
18 C4 C C4 N N N 0 3.661 -2.415 -0.384
19 O4 O O4 N N N 0 4.412 -3.361 -0.527
20 C5 C C5 N N N 0 4.025 -1.299 0.497
21 C6 C C6 N N N 0 3.155 -0.262 0.619
22 C7 C C7 N N N 0 3.483 0.89 1.492
23 O71 O O71 N N N 0 4.003 1.88 1.021
24 O72 O O72 N N N 0 3.204 0.839 2.809
25 HOP2 H 2HOP N N N 0 -5.929 -1.722 1.789
26 HOP3 H 3HOP N N N 0 -3.732 -2.614 -0.295
27 H1' H H1* N N N 0 1.362 1.519 0.83
28 H2' H H2* N N N 0 0.832 0.83 -2.115
29 H3' H H3* N N N 0 -1.14 2.103 -2.044
30 H4' H H4* N N N 0 -1.438 2.005 0.859
31 HO2' H *HO2 N N N 0 1.705 3.083 -2.273
32 HO3' H *HO3 N N N 0 -0.032 4.121 -1.401
33 H5'1 H 1H5* N N N 0 -2.3 0.026 -1.302
34 H5'2 H 2H5* N N N 0 -3.18 1.52 -0.899
35 HN3 H HN3 N N N 0 2.223 -3.105 -1.617
36 H5 H H5 N N N 0 4.964 -1.299 1.031
37 HO7 H HO7 N N N 0 3.436 1.614 3.338