data_OMP
#
_chem_comp.id OMP
_chem_comp.name "OROTIDINE-5'-MONOPHOSPHATE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H13 N2 O11 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2012-01-05
_chem_comp.pdbx_ambiguous_flag ?
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 368.191
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code OMP
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1STO
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
OMP P P P 0 1 N N N N N N 39.208 34.690 35.291 -4.583 -0.715 0.387 P OMP 1
OMP O1P O1P O 0 1 N N N N N N 40.481 34.850 34.502 -5.590 0.207 -0.183 O1P OMP 2
OMP O2P O2P O 0 1 N N N N N N 38.049 34.464 34.393 -5.089 -1.244 1.821 O2P OMP 3
OMP O3P O3P O 0 1 N N N N N N 39.276 33.473 36.349 -4.380 -1.967 -0.605 O3P OMP 4
OMP "O5'" O5* O 0 1 N N N N N N 38.837 36.023 36.112 -3.184 0.061 0.565 "O5'" OMP 5
OMP "C5'" C5* C 0 1 N N N N N N 39.768 36.678 36.979 -2.527 0.738 -0.509 "C5'" OMP 6
OMP "C4'" C4* C 0 1 N N R N N N 39.085 37.930 37.476 -1.229 1.365 0.002 "C4'" OMP 7
OMP "O4'" O4* O 0 1 N N N N N N 39.997 38.678 38.280 -0.302 0.332 0.377 "O4'" OMP 8
OMP "C3'" C3* C 0 1 N N S N N N 38.535 38.921 36.476 -0.567 2.188 -1.121 "C3'" OMP 9
OMP "O3'" O3* O 0 1 N N N N N N 37.404 39.627 36.990 -0.442 3.557 -0.731 "O3'" OMP 10
OMP "C2'" C2* C 0 1 N N R N N N 39.701 39.873 36.295 0.830 1.543 -1.291 "C2'" OMP 11
OMP "O2'" O2* O 0 1 N N N N N N 39.337 41.169 35.814 1.833 2.543 -1.481 "O2'" OMP 12
OMP "C1'" C1* C 0 1 N N R N N N 40.311 39.898 37.681 1.021 0.820 0.067 "C1'" OMP 13
OMP N1 N1 N 0 1 N N N N N N 41.714 40.267 37.858 1.962 -0.295 -0.071 N1 OMP 14
OMP C2 C2 C 0 1 N N N N N N 42.673 39.497 37.213 1.649 -1.328 -0.871 C2 OMP 15
OMP O2 O2 O 0 1 N N N N N N 42.354 38.547 36.531 0.589 -1.315 -1.465 O2 OMP 16
OMP N3 N3 N 0 1 N N N N N N 43.982 39.882 37.395 2.478 -2.374 -1.031 N3 OMP 17
OMP C4 C4 C 0 1 N N N N N N 44.433 40.964 38.164 3.661 -2.415 -0.384 C4 OMP 18
OMP O4 O4 O 0 1 N N N N N N 45.632 41.160 38.215 4.412 -3.361 -0.527 O4 OMP 19
OMP C5 C5 C 0 1 N N N N N N 43.390 41.722 38.813 4.025 -1.299 0.497 C5 OMP 20
OMP C6 C6 C 0 1 N N N N N N 42.097 41.388 38.665 3.155 -0.262 0.619 C6 OMP 21
OMP C7 C7 C 0 1 N N N N N N 41.205 42.042 39.637 3.483 0.890 1.492 C7 OMP 22
OMP O71 O71 O 0 1 N N N N N N 41.410 43.235 39.947 4.003 1.880 1.021 O71 OMP 23
OMP O72 O72 O 0 1 N N N N N N 40.250 41.418 40.170 3.204 0.839 2.809 O72 OMP 24
OMP HOP2 2HOP H 0 0 N N N N N N 37.253 34.416 34.909 -5.929 -1.722 1.789 HOP2 OMP 25
OMP HOP3 3HOP H 0 0 N N N N N N 39.289 32.646 35.881 -3.732 -2.614 -0.295 HOP3 OMP 26
OMP "H1'" H1* H 0 1 N N N N N N 39.858 40.769 38.178 1.362 1.519 0.830 "H1'" OMP 27
OMP "H2'" H2* H 0 1 N N N N N N 40.398 39.542 35.511 0.832 0.830 -2.115 "H2'" OMP 28
OMP "H3'" H3* H 0 1 N N N N N N 38.184 38.442 35.550 -1.140 2.103 -2.044 "H3'" OMP 29
OMP "H4'" H4* H 0 1 N N N N N N 38.209 37.508 37.991 -1.438 2.005 0.859 "H4'" OMP 30
OMP "HO2'" *HO2 H 0 0 N N N N N N 39.256 41.768 36.547 1.705 3.083 -2.273 "HO2'" OMP 31
OMP "HO3'" *HO3 H 0 0 N N N N N N 37.524 39.784 37.919 -0.032 4.121 -1.401 "HO3'" OMP 32
OMP "H5'1" 1H5* H 0 0 N N N N N N 40.033 36.024 37.823 -2.300 0.026 -1.302 "H5'1" OMP 33
OMP "H5'2" 2H5* H 0 0 N N N N N N 40.701 36.920 36.448 -3.180 1.520 -0.899 "H5'2" OMP 34
OMP HN3 HN3 H 0 1 N N N N N N 44.681 39.336 36.933 2.223 -3.105 -1.617 HN3 OMP 35
OMP H5 H5 H 0 1 N N N N N N 43.653 42.571 39.427 4.964 -1.299 1.031 H5 OMP 36
OMP HO7 HO7 H 0 1 N N N N N N 39.794 41.992 40.774 3.436 1.614 3.338 HO7 OMP 37
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
OMP P O1P DOUB N N 1
OMP P O2P SING N N 2
OMP P O3P SING N N 3
OMP P "O5'" SING N N 4
OMP O2P HOP2 SING N N 5
OMP O3P HOP3 SING N N 6
OMP "O5'" "C5'" SING N N 7
OMP "C5'" "C4'" SING N N 8
OMP "C5'" "H5'1" SING N N 9
OMP "C5'" "H5'2" SING N N 10
OMP "C4'" "O4'" SING N N 11
OMP "C4'" "C3'" SING N N 12
OMP "C4'" "H4'" SING N N 13
OMP "O4'" "C1'" SING N N 14
OMP "C3'" "C2'" SING N N 15
OMP "C3'" "O3'" SING N N 16
OMP "C3'" "H3'" SING N N 17
OMP "O3'" "HO3'" SING N N 18
OMP "C2'" "C1'" SING N N 19
OMP "C2'" "O2'" SING N N 20
OMP "C2'" "H2'" SING N N 21
OMP "O2'" "HO2'" SING N N 22
OMP "C1'" N1 SING N N 23
OMP "C1'" "H1'" SING N N 24
OMP N1 C2 SING N N 25
OMP N1 C6 SING N N 26
OMP C2 N3 SING N N 27
OMP C2 O2 DOUB N N 28
OMP N3 C4 SING N N 29
OMP N3 HN3 SING N N 30
OMP C4 C5 SING N N 31
OMP C4 O4 DOUB N N 32
OMP C5 C6 DOUB N N 33
OMP C5 H5 SING N N 34
OMP C6 C7 SING N N 35
OMP C7 O71 DOUB N N 36
OMP C7 O72 SING N N 37
OMP O72 HO7 SING N N 38
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
OMP SMILES ACDLabs 10.04 O=C(O)C=1N(C(=O)NC(=O)C=1)C2OC(C(O)C2O)COP(=O)(O)O
OMP InChI InChI 1.03 InChI=1S/C10H13N2O11P/c13-5-1-3(9(16)17)12(10(18)11-5)8-7(15)6(14)4(23-8)2-22-24(19,20)21/h1,4,6-8,14-15H,2H2,(H,16,17)(H,11,13,18)(H2,19,20,21)/t4-,6-,7-,8-/m1/s1
OMP InChIKey InChI 1.03 KYOBSHFOBAOFBF-XVFCMESISA-N
OMP SMILES_CANONICAL CACTVS 3.385 O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(O)=O)N2C(=O)NC(=O)C=C2C(O)=O
OMP SMILES CACTVS 3.385 O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(O)=O)N2C(=O)NC(=O)C=C2C(O)=O
OMP SMILES_CANONICAL "OpenEye OEToolkits" 1.7.5 C1=C(N(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O)C(=O)O
OMP SMILES "OpenEye OEToolkits" 1.7.5 C1=C(N(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(O)O)O)O)C(=O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
OMP "SYSTEMATIC NAME" ACDLabs 10.04 "6-carboxyuridine 5'-(dihydrogen phosphate)"
OMP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "3-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(phosphonooxymethyl)oxolan-2-yl]-2,6-dioxo-pyrimidine-4-carboxylic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
OMP 'Create component' 1999-07-08 RCSB
OMP 'Modify descriptor' 2011-06-04 RCSB
OMP 'Modify descriptor' 2012-01-05 RCSB
OMP 'Modify coordinates' 2012-01-05 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id OMP
_pdbe_chem_comp_drugbank_details.drugbank_id DB02957
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name 'Orotidylic acid'
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number 2149-82-8
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
OMP '5-(Dihydrogen phosphate)orotidine' DrugBank ?
OMP "6-carboxy-5'-uridylic acid" DrugBank ?
OMP "orotidine 5'-(dihydrogen phosphate)" DrugBank ?
OMP "Orotidine 5'-monophosphate" DrugBank ?
OMP "Orotidine 5'-phosphate" DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id OMP
_pdbe_chem_comp_drugbank_classification.drugbank_id DB02957
_pdbe_chem_comp_drugbank_classification.parent 'Pyrimidine ribonucleoside monophosphates'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Pyrimidine nucleotides'
_pdbe_chem_comp_drugbank_classification.superclass 'Nucleosides, nucleotides, and analogues'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as pyrimidine ribonucleoside monophosphates. These are pyrimidine ribobucleotides with monophosphate group  linked to the ribose moiety.'
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
OMP P P 4.807 -4.683 1
OMP O1P O 3.925 -5.896 2
OMP O2P O 3.593 -3.801 3
OMP O3P O 6.020 -5.564 4
OMP "O5'" O 5.688 -3.469 5
OMP "C5'" C 7.180 -3.626 6
OMP "C4'" C 8.062 -2.412 7
OMP "O4'" O 7.598 -0.986 8
OMP "C3'" C 9.562 -2.412 9
OMP "O3'" O 10.444 -3.626 10
OMP "C2'" C 10.025 -0.986 11
OMP "O2'" O 11.452 -0.522 12
OMP "C1'" C 8.812 -0.104 13
OMP N1 N 8.812 1.396 14
OMP C2 C 10.111 2.146 15
OMP O2 O 11.410 1.396 16
OMP N3 N 10.111 3.646 17
OMP C4 C 8.812 4.396 18
OMP O4 O 8.812 5.896 19
OMP C5 C 7.513 3.646 20
OMP C6 C 7.513 2.146 21
OMP C7 C 6.214 1.396 22
OMP O71 O 4.915 2.146 23
OMP O72 O 6.214 -0.104 24
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
OMP P O1P DOUBLE NONE 1
OMP P O2P SINGLE NONE 2
OMP P O3P SINGLE NONE 3
OMP P "O5'" SINGLE NONE 4
OMP "O5'" "C5'" SINGLE NONE 5
OMP "C4'" "C5'" SINGLE BEGINWEDGE 6
OMP "C4'" "O4'" SINGLE NONE 7
OMP "C4'" "C3'" SINGLE NONE 8
OMP "O4'" "C1'" SINGLE NONE 9
OMP "C3'" "C2'" SINGLE NONE 10
OMP "C3'" "O3'" SINGLE BEGINDASH 11
OMP "C2'" "C1'" SINGLE NONE 12
OMP "C2'" "O2'" SINGLE BEGINDASH 13
OMP "C1'" N1 SINGLE BEGINWEDGE 14
OMP N1 C2 SINGLE NONE 15
OMP N1 C6 SINGLE NONE 16
OMP C2 N3 SINGLE NONE 17
OMP C2 O2 DOUBLE NONE 18
OMP N3 C4 SINGLE NONE 19
OMP C4 C5 SINGLE NONE 20
OMP C4 O4 DOUBLE NONE 21
OMP C5 C6 DOUBLE NONE 22
OMP C6 C7 SINGLE NONE 23
OMP C7 O71 DOUBLE NONE 24
OMP C7 O72 SINGLE NONE 25
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
OMP MurckoScaffold S1 scaffold 'O=c1ccn([C@H]2CCCO2)c(=O)[nH]1' InChI=1S/C8H10N2O3/c11-6-3-4-10(8(12)9-6)7-2-1-5-13-7/h3-4,7H,1-2,5H2,(H,9,11,12)/t7-/m1/s1 CWWIKVUHBBTKHC-SSDOTTSWSA-N
OMP phosphate F1 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
OMP pyrimidine F2 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
OMP ribose F3 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
OMP "C4'" S1 1
OMP "O4'" S1 1
OMP "C3'" S1 1
OMP "C2'" S1 1
OMP "C1'" S1 1
OMP N1 S1 1
OMP C2 S1 1
OMP O2 S1 1
OMP N3 S1 1
OMP C4 S1 1
OMP O4 S1 1
OMP C5 S1 1
OMP C6 S1 1
OMP O2P F1 1
OMP P F1 1
OMP O1P F1 1
OMP O3P F1 1
OMP "O5'" F1 1
OMP C5 F2 1
OMP C4 F2 1
OMP N3 F2 1
OMP C2 F2 1
OMP N1 F2 1
OMP C6 F2 1
OMP "C2'" F3 1
OMP "C3'" F3 1
OMP "C4'" F3 1
OMP "O4'" F3 1
OMP "C1'" F3 1
OMP "C5'" F3 1
OMP "O5'" F3 1
OMP "O3'" F3 1
OMP "O2'" F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id OMP
_pdbe_chem_comp_rdkit_properties.exactmw 368.026
_pdbe_chem_comp_rdkit_properties.amw 368.191
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 13
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 6
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 9
_pdbe_chem_comp_rdkit_properties.NumHBD 6
_pdbe_chem_comp_rdkit_properties.NumHBA 12
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 24
_pdbe_chem_comp_rdkit_properties.NumAtoms 37
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 14
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.500
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 150.253
_pdbe_chem_comp_rdkit_properties.tpsa 208.610
_pdbe_chem_comp_rdkit_properties.CrippenClogP -1.292
_pdbe_chem_comp_rdkit_properties.CrippenMR 72.152
_pdbe_chem_comp_rdkit_properties.chi0v 11.727
_pdbe_chem_comp_rdkit_properties.chi1v 6.896
_pdbe_chem_comp_rdkit_properties.chi2v 2.604
_pdbe_chem_comp_rdkit_properties.chi3v 2.604
_pdbe_chem_comp_rdkit_properties.chi4v 1.644
_pdbe_chem_comp_rdkit_properties.chi0n 23.832
_pdbe_chem_comp_rdkit_properties.chi1n 11.424
_pdbe_chem_comp_rdkit_properties.chi2n 2.289
_pdbe_chem_comp_rdkit_properties.chi3n 2.289
_pdbe_chem_comp_rdkit_properties.chi4n 1.450
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.860
_pdbe_chem_comp_rdkit_properties.kappa1 7.575
_pdbe_chem_comp_rdkit_properties.kappa2 6.565
_pdbe_chem_comp_rdkit_properties.kappa3 3.787
_pdbe_chem_comp_rdkit_properties.Phi 2.072
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
OMP UniChem DrugBank DB02957
OMP UniChem 'KEGG LIGAND' C01103
OMP UniChem ChEBI 15842
OMP UniChem ZINC ZINC000004095542
OMP UniChem fdasrs H0ARN8U4Y9
OMP UniChem SureChEMBL SCHEMBL21891
OMP UniChem HMDB HMDB0000218
OMP UniChem NMRShiftDB 60021137
OMP UniChem Nikkaji J13.801K
OMP UniChem MetaboLights MTBLC15842
OMP UniChem BRENDA 135988
OMP UniChem BRENDA 30303
OMP UniChem BRENDA 32941
OMP UniChem BRENDA 48321
OMP UniChem BRENDA 6161
OMP UniChem BRENDA 742
OMP UniChem MedChemExpress HY-N8060
OMP UniChem 'Probes And Drugs' PD059747
OMP UniChem PubChem 160617
OMP UniChem 'PubChem TPHARMA' 81069619
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
OMP P 5.033 0.398 0.402 ETKDGv3 1
OMP O1P 5.411 -0.685 1.388 ETKDGv3 2
OMP O2P 6.346 0.699 -0.621 ETKDGv3 3
OMP O3P 4.655 1.818 1.242 ETKDGv3 4
OMP "O5'" 3.700 -0.103 -0.538 ETKDGv3 5
OMP "C5'" 2.603 -0.310 0.319 ETKDGv3 6
OMP "C4'" 1.377 -0.719 -0.505 ETKDGv3 7
OMP "O4'" 0.312 -1.023 0.362 ETKDGv3 8
OMP "C3'" 0.908 0.387 -1.447 ETKDGv3 9
OMP "O3'" 1.528 0.282 -2.704 ETKDGv3 10
OMP "C2'" -0.588 0.154 -1.535 ETKDGv3 11
OMP "O2'" -0.948 -0.471 -2.743 ETKDGv3 12
OMP "C1'" -0.879 -0.788 -0.355 ETKDGv3 13
OMP N1 -1.905 -0.218 0.546 ETKDGv3 14
OMP C2 -1.617 1.013 1.251 ETKDGv3 15
OMP O2 -0.429 1.380 1.453 ETKDGv3 16
OMP N3 -2.691 1.842 1.692 ETKDGv3 17
OMP C4 -4.033 1.409 1.487 ETKDGv3 18
OMP O4 -4.995 2.156 1.805 ETKDGv3 19
OMP C5 -4.287 0.070 0.943 ETKDGv3 20
OMP C6 -3.272 -0.718 0.546 ETKDGv3 21
OMP C7 -3.584 -2.121 0.190 ETKDGv3 22
OMP O71 -2.788 -3.047 0.500 ETKDGv3 23
OMP O72 -4.787 -2.432 -0.439 ETKDGv3 24
OMP HOP2 6.455 -0.136 -1.144 ETKDGv3 25
OMP HOP3 4.394 2.465 0.539 ETKDGv3 26
OMP "H1'" -1.206 -1.765 -0.764 ETKDGv3 27
OMP "H2'" -1.135 1.122 -1.430 ETKDGv3 28
OMP "H3'" 1.085 1.395 -1.000 ETKDGv3 29
OMP "H4'" 1.627 -1.636 -1.088 ETKDGv3 30
OMP "HO2'" -1.031 0.248 -3.423 ETKDGv3 31
OMP "HO3'" 2.385 0.778 -2.643 ETKDGv3 32
OMP "H5'1" 2.356 0.612 0.893 ETKDGv3 33
OMP "H5'2" 2.823 -1.135 1.034 ETKDGv3 34
OMP HN3 -2.496 2.763 2.146 ETKDGv3 35
OMP H5 -5.308 -0.294 0.934 ETKDGv3 36
OMP HO7 -5.020 -3.391 -0.670 ETKDGv3 37
#