Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : NXX

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 71


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O7N O O7N N N N 0 -8.79 -4.88 2.503
2 C7N C C7N N N N 0 -8.289 -4.346 1.373
3 O8N O O8N N N N 0 -8.393 -4.944 0.321
4 C3N C C3N N Y N 0 -7.614 -3.033 1.412
5 C4N C C4N N Y N 0 -7.483 -2.336 2.619
6 C5N C C5N N Y N 0 -6.841 -1.109 2.602
7 C6N C C6N N Y N 0 -6.355 -0.617 1.405
8 C2N C C2N N Y N 0 -7.09 -2.468 0.248
9 N1N N N1N N Y N 1 -6.493 -1.296 0.282
10 C1M C C1M R N N 0 -5.962 -0.731 -0.961
11 C2M C C2M R N N 0 -6.932 0.332 -1.537
12 O2M O O2M N N N 0 -7.93 -0.28 -2.357
13 C3M C C3M S N N 0 -5.983 1.212 -2.385
14 O3M O O3M N N N 0 -6.039 0.827 -3.76
15 O4M O O4M N N N 0 -4.755 0.019 -0.704
16 C4M C C4M R N N 0 -4.584 0.929 -1.803
17 C5M C C5M N N N 0 -3.954 2.232 -1.307
18 O5M O O5M N N N 0 -2.621 1.977 -0.861
19 PN P PN R N N 0 -1.658 3.125 -0.271
20 O1N O O1N N N N 0 -1.551 4.23 -1.251
21 O2N O O2N N N N 0 -2.274 3.688 1.106
22 O3A O O3A N N N 0 -0.197 2.51 0.006
23 PA P PA R N N 0 1.253 3.153 0.287
24 O1A O O1A N N N 0 1.857 3.733 -1.088
25 O2A O O2A N N N 0 1.123 4.251 1.271
26 O5B O O5B N N N 0 2.238 2.022 0.871
27 C5B C C5B N N N 0 3.566 2.301 1.318
28 C4B C C4B R N N 0 4.221 1.009 1.809
29 C3B C C3B S N N 0 5.614 1.317 2.392
30 O3B O O3B N N N 0 5.678 0.927 3.765
31 C2B C C2B R N N 0 6.581 0.459 1.54
32 O2P O O2P N N N 0 7.59 -0.137 2.358
33 C1B C C1B R N N 0 5.631 -0.62 0.959
34 O4B O O4B N N N 0 4.41 0.107 0.705
35 N9A N N9A N Y N 0 6.174 -1.169 -0.286
36 C8A C C8A N Y N 0 5.869 -0.757 -1.549
37 N7A N N7A N Y N 0 6.532 -1.462 -2.419
38 C5A C C5A N Y N 0 7.303 -2.368 -1.771
39 C4A C C4A N Y N 0 7.087 -2.187 -0.395
40 C6A C C6A N Y N 0 8.205 -3.366 -2.176
41 N6A N N6A N N N 0 8.463 -3.586 -3.517
42 N1A N N1A N Y N 0 8.806 -4.094 -1.24
43 C2A C C2A N Y N 0 8.566 -3.891 0.043
44 N3A N N3A N Y N 0 7.738 -2.96 0.468
45 HO7N H HO7N N N N 0 -9.223 -5.741 2.428
46 H4N H H4N N N N 0 -7.872 -2.744 3.54
47 H5N H H5N N N N 0 -6.722 -0.543 3.514
48 H6N H H6N N N N 0 -5.854 0.34 1.389
49 H2N H H2N N N N 0 -7.18 -2.996 -0.69
50 H1M H H1M N N N 0 -5.778 -1.519 -1.691
51 H2M H H2M N N N 0 -7.391 0.913 -0.737
52 HO2M H HO2M N N N 0 -8.561 0.344 -2.74
53 H3M H H3M N N N 0 -6.239 2.266 -2.274
54 HO3M H HO3M N N N 0 -6.913 0.929 -4.162
55 H4M H H4M N N N 0 -3.951 0.476 -2.565
56 H5M1 H 1H5M N N N 0 -3.933 2.958 -2.119
57 H5M2 H 2H5M N N N 0 -4.544 2.629 -0.48
58 HO2N H HO2N N N N 0 -2.374 3.017 1.795
59 HO1A H HO1A N N N 0 1.97 3.068 -1.78
60 H5B1 H 1H5B N N N 0 4.147 2.713 0.493
61 H5B2 H 2H5B N N N 0 3.53 3.023 2.134
62 H4B H H4B N N N 0 3.595 0.54 2.567
63 H3B H H3B N N N 0 5.848 2.376 2.284
64 H1B H H1B N N N 0 5.461 -1.413 1.687
65 HO3B H HO3B N N N 0 6.55 1.045 4.167
66 H2B H H2B N N N 0 7.028 1.053 0.743
67 HO2P H HO2P N N N 0 8.154 0.502 2.815
68 H8A H H8A N N N 0 5.178 0.037 -1.792
69 H6A1 H 1H6A N N N 0 8.019 -3.048 -4.191
70 H6A2 H 2H6A N N N 0 9.088 -4.279 -3.784
71 H2A H H2A N N N 0 9.076 -4.505 0.771