Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : NPJ

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 57


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1A C C1A R N N 0 -3.342 -0.859 0.065
2 C2A C C2A R N N 0 -4.374 -0.808 -1.064
3 C3A C C3A S N N 0 -4.462 0.627 -1.596
4 C4A C C4A S N N 0 -4.735 1.57 -0.418
5 C5A C C5A R N N 0 -3.674 1.34 0.661
6 C6A C C6A N N N 0 -3.917 2.302 1.826
7 O1A O O1A N N N 0 -2.074 -0.426 -0.433
8 O2A O O2A N N N 0 -3.975 -1.687 -2.117
9 O3A O O3A N N N 0 -5.525 0.722 -2.546
10 O4A O O4A N N N 0 -4.674 2.925 -0.867
11 O5A O O5A N N N 0 -3.749 -0.004 1.132
12 O6A O O6A N N N 0 -2.86 2.172 2.779
13 C1B C C1B R N N 0 1.592 -1.624 1.012
14 C2B C C2B R N N 0 0.472 -2.653 1.186
15 C3B C C3B R N N 0 -0.691 -2.288 0.256
16 C4B C C4B S N N 0 -1.094 -0.833 0.523
17 C5B C C5B R N N 0 0.143 0.059 0.401
18 C6B C C6B N N N 0 -0.255 1.518 0.635
19 O1B O O1B N N N 0 2.019 -1.613 -0.352
20 O2B O O2B N N N 0 0.96 -3.954 0.853
21 O3B O O3B N N N 0 -1.802 -3.148 0.513
22 O5B O O5B N N N 0 1.116 -0.328 1.369
23 O6B O O6B N N N 0 0.877 2.362 0.415
24 C1C C C1C N Y N 0 5.479 0.628 -0.5
25 C2C C C2C N Y N 0 4.84 0.424 0.709
26 C3C C C3C N Y N 0 3.681 -0.326 0.761
27 C4C C C4C N Y N 0 3.158 -0.875 -0.401
28 C5C C C5C N Y N 0 3.804 -0.673 -1.612
29 C6C C C6C N Y N 0 4.96 0.082 -1.66
30 N1C N N1C N N N 1 6.72 1.433 -0.553
31 O2C O O2C N N N -1 7.178 1.914 0.467
32 O3C O O3C N N N 0 7.284 1.613 -1.618
33 H1A H H1A N N N 0 -3.257 -1.881 0.432
34 H2A H H2A N N N 0 -5.348 -1.115 -0.681
35 H3A H H3A N N N 0 -3.52 0.899 -2.072
36 H4A H H4A N N N 0 -5.724 1.365 -0.009
37 H5A H H5A N N N 0 -2.685 1.522 0.241
38 H6A1 H 1H6A N N N 0 -4.867 2.062 2.302
39 H6A2 H 2H6A N N N 0 -3.946 3.325 1.452
40 HO2A H HO2A N N N 0 -3.927 -2.574 -1.737
41 HO3A H HO3A N N N 0 -5.317 0.104 -3.261
42 HO4A H HO4A N N N 0 -5.352 3.024 -1.549
43 HO6A H HO6A N N N 0 -3.051 2.793 3.494
44 H1B H H1B N N N 0 2.432 -1.891 1.652
45 H2B H H2B N N N 0 0.128 -2.646 2.22
46 H3B H H3B N N N 0 -0.377 -2.396 -0.782
47 H4B H H4B N N N 0 -1.507 -0.748 1.528
48 H5B H H5B N N N 0 0.565 -0.045 -0.599
49 H6B1 H 1H6B N N N 0 -1.052 1.792 -0.055
50 H6B2 H 2H6B N N N 0 -0.604 1.639 1.661
51 HO2B H HO2B N N N 0 1.689 -4.144 1.46
52 HO3B H HO3B N N N 0 -1.505 -4.051 0.333
53 HO6B H HO6B N N N 0 0.584 3.27 0.573
54 H2C H H2C N N N 0 5.248 0.851 1.613
55 H3C H H3C N N N 0 3.182 -0.485 1.706
56 H5C H H5C N N N 0 3.399 -1.099 -2.518
57 H6C H H6C N N N 0 5.461 0.244 -2.603