Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : ND9

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 58


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C15 C C1 N N N 0 3.069 0.205 -0.833
2 C12 C C2 N N N 0 -0.031 1.689 0.904
3 C11 C C3 N N N 0 -2.213 0.691 0.423
4 C10 C C4 N Y N 0 -1.839 -1.924 0.887
5 C13 C C5 N N N 0 1.292 0.928 0.768
6 C14 C C6 N N N 0 1.731 0.935 -0.698
7 C9 C C7 N Y N 0 -1.22 -2.91 1.631
8 C6 C C8 N Y N 0 -1.199 -3.053 -1.133
9 C7 C C9 N Y N 0 -0.573 -4.031 -0.385
10 C8 C C10 N Y N 0 -0.588 -3.963 0.996
11 C3 C C11 N N N 0 -4.282 -0.671 0.298
12 C2 C C12 N N N 0 -5.045 0.408 1.069
13 C1 C C13 N N N 0 -5.641 1.414 0.083
14 C4 C C14 N N N 0 -3.158 -0.021 -0.511
15 C5 C C15 N Y N 0 -1.829 -1.993 -0.498
16 N1 N N1 N N N 0 -6.374 2.45 0.824
17 O1 O O1 N N N 0 -2.445 -1.029 -1.232
18 O2 O O2 N N N 0 -2.536 0.891 1.575
19 N2 N N2 N N N 0 -1.01 1.104 -0.022
20 N3 N N3 N N N 0 4.106 0.949 -0.113
21 C16 C C16 N N N 0 5.373 0.492 -0.094
22 O3 O O3 N N N 0 5.656 -0.536 -0.672
23 C17 C C17 N N N 0 6.439 1.257 0.647
24 C18 C C18 N N N 0 0.676 0.227 -1.551
25 C19 C C19 N N N 0 -0.653 0.98 -1.441
26 C20 C C20 N N N 0 -3.755 0.985 -1.497
27 C21 C C21 N N N 0 -4.517 2.064 -0.726
28 H1 H H1 N N N 0 2.981 -0.796 -0.411
29 H2 H H2 N N N 0 3.339 0.133 -1.886
30 H3 H H3 N N N 0 -0.398 1.603 1.927
31 H4 H H4 N N N 0 0.125 2.739 0.657
32 H5 H H5 N N N 0 -2.333 -1.102 1.384
33 H6 H H6 N N N 0 2.055 1.411 1.378
34 H7 H H7 N N N 0 1.156 -0.101 1.103
35 H8 H H8 N N N 0 1.843 1.964 -1.039
36 H9 H H9 N N N 0 -1.231 -2.859 2.71
37 H10 H H10 N N N 0 -1.186 -3.107 -2.212
38 H11 H H11 N N N 0 -0.072 -4.85 -0.879
39 H12 H H12 N N N 0 -0.105 -4.733 1.579
40 H13 H H13 N N N 0 -3.857 -1.388 1.0
41 H14 H H14 N N N 0 -4.965 -1.186 -0.378
42 H15 H H15 N N N 0 -5.846 -0.055 1.646
43 H16 H H16 N N N 0 -4.361 0.923 1.745
44 H17 H H17 N N N 0 -6.325 0.899 -0.592
45 H18 H H18 N N N 0 -6.778 3.128 0.194
46 H19 H H19 N N N 0 -7.08 2.04 1.416
47 H21 H H21 N N N 0 3.88 1.771 0.35
48 H22 H H22 N N N 0 6.527 2.258 0.225
49 H23 H H23 N N N 0 6.169 1.329 1.701
50 CL1 CL CL1 N N Y 0 8.016 0.397 0.488
51 H25 H H25 N N N 0 1.0 0.211 -2.592
52 H26 H H26 N N N 0 0.547 -0.795 -1.196
53 H27 H H27 N N N 0 -1.431 0.426 -1.967
54 H28 H H28 N N N 0 -0.549 1.972 -1.88
55 H29 H H29 N N N 0 -2.954 1.448 -2.073
56 H30 H H30 N N N 0 -4.438 0.47 -2.173
57 H31 H H31 N N N 0 -4.942 2.781 -1.428
58 H32 H H32 N N N 0 -3.834 2.579 -0.05