data_ND9
#
_chem_comp.id ND9
_chem_comp.name 'N-[[1-(4-azanyl-1-phenoxy-cyclohexyl)carbonylpiperidin-4-yl]methyl]-2-chloranyl-ethanamide'
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C21 H30 Cl N3 O3'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-08-17
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 407.934
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code ND9
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8ARG
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
ND9 C15 C1 C 0 1 N N N N N N -19.289 -24.300 -1.314 3.069 0.205 -0.833 C15 ND9 1
ND9 C12 C2 C 0 1 N N N N N N -15.893 -22.505 -1.791 -0.031 1.689 0.904 C12 ND9 2
ND9 C11 C3 C 0 1 N N N N N N -15.718 -20.520 -0.335 -2.213 0.691 0.423 C11 ND9 3
ND9 C10 C4 C 0 1 Y N N N N N -17.125 -21.264 2.140 -1.839 -1.924 0.887 C10 ND9 4
ND9 C13 C5 C 0 1 N N N N N N -16.860 -23.614 -1.435 1.292 0.928 0.768 C13 ND9 5
ND9 C14 C6 C 0 1 N N N N N N -18.288 -23.302 -1.883 1.731 0.935 -0.698 C14 ND9 6
ND9 C9 C7 C 0 1 Y N N N N N -17.508 -22.282 3.010 -1.220 -2.910 1.631 C9 ND9 7
ND9 C6 C8 C 0 1 Y N N N N N -19.392 -20.446 2.114 -1.199 -3.053 -1.133 C6 ND9 8
ND9 C7 C9 C 0 1 Y N N N N N -19.760 -21.486 2.963 -0.573 -4.031 -0.385 C7 ND9 9
ND9 C8 C10 C 0 1 Y N N N N N -18.837 -22.422 3.365 -0.588 -3.963 0.996 C8 ND9 10
ND9 C3 C11 C 0 1 N N N N N N -15.334 -18.711 1.363 -4.282 -0.671 0.298 C3 ND9 11
ND9 C2 C12 C 0 1 N N N N N N -13.987 -18.174 0.877 -5.045 0.408 1.069 C2 ND9 12
ND9 C1 C13 C 0 1 N N N N N N -14.194 -17.103 -0.175 -5.641 1.414 0.083 C1 ND9 13
ND9 C4 C14 C 0 1 N N N N N N -16.296 -19.205 0.270 -3.158 -0.021 -0.511 C4 ND9 14
ND9 C5 C15 C 0 1 Y N N N N N -18.062 -20.321 1.740 -1.829 -1.993 -0.498 C5 ND9 15
ND9 N1 N1 N 0 1 N N N N N N -12.866 -16.625 -0.643 -6.374 2.450 0.824 N1 ND9 16
ND9 O1 O1 O 0 1 N N N N N N -17.667 -19.301 0.893 -2.445 -1.029 -1.232 O1 ND9 17
ND9 O2 O2 O 0 1 N N N N N N -14.617 -20.955 0.035 -2.536 0.891 1.575 O2 ND9 18
ND9 N2 N2 N 0 1 N N N N N N -16.390 -21.229 -1.254 -1.010 1.104 -0.022 N2 ND9 19
ND9 N3 N3 N 0 1 N N N N N N -20.556 -24.443 -2.046 4.106 0.949 -0.113 N3 ND9 20
ND9 C16 C16 C 0 1 N N N N N N -20.804 -25.533 -2.761 5.373 0.492 -0.094 C16 ND9 21
ND9 O3 O3 O 0 1 N N N N N N -19.944 -26.483 -2.832 5.656 -0.536 -0.672 O3 ND9 22
ND9 C17 C17 C 0 1 N N N N N N -22.125 -25.587 -3.508 6.439 1.257 0.647 C17 ND9 23
ND9 C18 C18 C 0 1 N N N N N N -18.698 -21.900 -1.436 0.676 0.227 -1.551 C18 ND9 24
ND9 C19 C19 C 0 1 N N N N N N -17.681 -20.869 -1.851 -0.653 0.980 -1.441 C19 ND9 25
ND9 C20 C20 C 0 1 N N N N N N -16.389 -18.163 -0.860 -3.755 0.985 -1.497 C20 ND9 26
ND9 C21 C21 C 0 1 N N N N N N -15.031 -17.635 -1.330 -4.517 2.064 -0.726 C21 ND9 27
ND9 H1 H1 H 0 1 N N N N N N -19.529 -23.985 -0.288 2.981 -0.796 -0.411 H1 ND9 28
ND9 H2 H2 H 0 1 N N N N N N -18.802 -25.286 -1.291 3.339 0.133 -1.886 H2 ND9 29
ND9 H3 H3 H 0 1 N N N N N N -14.906 -22.726 -1.357 -0.398 1.603 1.927 H3 ND9 30
ND9 H4 H4 H 0 1 N N N N N N -15.805 -22.433 -2.885 0.125 2.739 0.657 H4 ND9 31
ND9 H5 H5 H 0 1 N N N N N N -16.108 -21.209 1.780 -2.333 -1.102 1.384 H5 ND9 32
ND9 H6 H6 H 0 1 N N N N N N -16.854 -23.753 -0.344 2.055 1.411 1.378 H6 ND9 33
ND9 H7 H7 H 0 1 N N N N N N -16.530 -24.542 -1.925 1.156 -0.101 1.103 H7 ND9 34
ND9 H8 H8 H 0 1 N N N N N N -18.330 -23.348 -2.981 1.843 1.964 -1.039 H8 ND9 35
ND9 H9 H9 H 0 1 N N N N N N -16.768 -22.961 3.407 -1.231 -2.859 2.710 H9 ND9 36
ND9 H10 H10 H 0 1 N N N N N N -20.131 -19.747 1.752 -1.186 -3.107 -2.212 H10 ND9 37
ND9 H11 H11 H 0 1 N N N N N N -20.780 -21.558 3.309 -0.072 -4.850 -0.879 H11 ND9 38
ND9 H12 H12 H 0 1 N N N N N N -19.150 -23.268 3.959 -0.105 -4.733 1.579 H12 ND9 39
ND9 H13 H13 H 0 1 N N N N N N -15.838 -17.905 1.916 -3.857 -1.388 1.000 H13 ND9 40
ND9 H14 H14 H 0 1 N N N N N N -15.135 -19.553 2.042 -4.965 -1.186 -0.378 H14 ND9 41
ND9 H15 H15 H 0 1 N N N N N N -13.403 -18.999 0.444 -5.846 -0.055 1.646 H15 ND9 42
ND9 H16 H16 H 0 1 N N N N N N -13.439 -17.744 1.729 -4.361 0.923 1.745 H16 ND9 43
ND9 H17 H17 H 0 1 N N N N N N -14.733 -16.262 0.285 -6.325 0.899 -0.592 H17 ND9 44
ND9 H18 H18 H 0 1 N N N N N N -12.341 -16.283 0.136 -6.778 3.128 0.194 H18 ND9 45
ND9 H19 H19 H 0 1 N N N N N N -12.372 -17.381 -1.071 -7.080 2.040 1.416 H19 ND9 46
ND9 H21 H21 H 0 1 N N N N N N -21.237 -23.712 -2.005 3.880 1.771 0.350 H21 ND9 47
ND9 H22 H22 H 0 1 N N N N N N -22.184 -24.745 -4.213 6.527 2.258 0.225 H22 ND9 48
ND9 H23 H23 H 0 1 N N N N N N -22.196 -26.535 -4.062 6.169 1.329 1.701 H23 ND9 49
ND9 CL1 CL1 CL 0 0 N Y N N N N -22.929 -25.522 -2.805 8.016 0.397 0.488 CL1 ND9 50
ND9 H25 H25 H 0 1 N N N N N N -19.668 -21.649 -1.891 1.000 0.211 -2.592 H25 ND9 51
ND9 H26 H26 H 0 1 N N N N N N -18.793 -21.888 -0.340 0.547 -0.795 -1.196 H26 ND9 52
ND9 H27 H27 H 0 1 N N N N N N -17.593 -20.854 -2.947 -1.431 0.426 -1.967 H27 ND9 53
ND9 H28 H28 H 0 1 N N N N N N -17.992 -19.876 -1.495 -0.549 1.972 -1.880 H28 ND9 54
ND9 H29 H29 H 0 1 N N N N N N -16.985 -17.312 -0.498 -2.954 1.448 -2.073 H29 ND9 55
ND9 H30 H30 H 0 1 N N N N N N -16.896 -18.627 -1.719 -4.438 0.470 -2.173 H30 ND9 56
ND9 H31 H31 H 0 1 N N N N N N -14.482 -18.453 -1.819 -4.942 2.781 -1.428 H31 ND9 57
ND9 H32 H32 H 0 1 N N N N N N -15.197 -16.822 -2.052 -3.834 2.579 -0.050 H32 ND9 58
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ND9 C17 C16 SING N N 1
ND9 O3 C16 DOUB N N 2
ND9 C16 N3 SING N N 3
ND9 N3 C15 SING N N 4
ND9 C14 C18 SING N N 5
ND9 C14 C13 SING N N 6
ND9 C14 C15 SING N N 7
ND9 C19 C18 SING N N 8
ND9 C19 N2 SING N N 9
ND9 C12 C13 SING N N 10
ND9 C12 N2 SING N N 11
ND9 C21 C20 SING N N 12
ND9 C21 C1 SING N N 13
ND9 N2 C11 SING N N 14
ND9 C20 C4 SING N N 15
ND9 N1 C1 SING N N 16
ND9 C11 O2 DOUB N N 17
ND9 C11 C4 SING N N 18
ND9 C1 C2 SING N N 19
ND9 C4 O1 SING N N 20
ND9 C4 C3 SING N N 21
ND9 C2 C3 SING N N 22
ND9 O1 C5 SING N N 23
ND9 C5 C6 DOUB Y N 24
ND9 C5 C10 SING Y N 25
ND9 C6 C7 SING Y N 26
ND9 C10 C9 DOUB Y N 27
ND9 C7 C8 DOUB Y N 28
ND9 C9 C8 SING Y N 29
ND9 C15 H1 SING N N 30
ND9 C15 H2 SING N N 31
ND9 C12 H3 SING N N 32
ND9 C12 H4 SING N N 33
ND9 C10 H5 SING N N 34
ND9 C13 H6 SING N N 35
ND9 C13 H7 SING N N 36
ND9 C14 H8 SING N N 37
ND9 C9 H9 SING N N 38
ND9 C6 H10 SING N N 39
ND9 C7 H11 SING N N 40
ND9 C8 H12 SING N N 41
ND9 C3 H13 SING N N 42
ND9 C3 H14 SING N N 43
ND9 C2 H15 SING N N 44
ND9 C2 H16 SING N N 45
ND9 C1 H17 SING N N 46
ND9 N1 H18 SING N N 47
ND9 N1 H19 SING N N 48
ND9 N3 H21 SING N N 49
ND9 C17 H22 SING N N 50
ND9 C17 H23 SING N N 51
ND9 C17 CL1 SING N N 52
ND9 C18 H25 SING N N 53
ND9 C18 H26 SING N N 54
ND9 C19 H27 SING N N 55
ND9 C19 H28 SING N N 56
ND9 C20 H29 SING N N 57
ND9 C20 H30 SING N N 58
ND9 C21 H31 SING N N 59
ND9 C21 H32 SING N N 60
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
ND9 InChI InChI 1.06 'InChI=1S/C21H30ClN3O3/c22-14-19(26)24-15-16-8-12-25(13-9-16)20(27)21(10-6-17(23)7-11-21)28-18-4-2-1-3-5-18/h1-5,16-17H,6-15,23H2,(H,24,26)/t17-,21-'
ND9 InChIKey InChI 1.06 KYZPVSMGBRSVOQ-CYWCHRQTSA-N
ND9 SMILES_CANONICAL CACTVS 3.385 'N[C@@H]1CC[C@](CC1)(Oc2ccccc2)C(=O)N3CC[C@H](CC3)CNC(=O)CCl'
ND9 SMILES CACTVS 3.385 'N[CH]1CC[C](CC1)(Oc2ccccc2)C(=O)N3CC[CH](CC3)CNC(=O)CCl'
ND9 SMILES_CANONICAL 'OpenEye OEToolkits' 2.0.7 'c1ccc(cc1)OC2(CCC(CC2)N)C(=O)N3CCC(CC3)CNC(=O)CCl'
ND9 SMILES 'OpenEye OEToolkits' 2.0.7 'c1ccc(cc1)OC2(CCC(CC2)N)C(=O)N3CCC(CC3)CNC(=O)CCl'
#
_pdbx_chem_comp_identifier.comp_id ND9
_pdbx_chem_comp_identifier.type 'SYSTEMATIC NAME'
_pdbx_chem_comp_identifier.program 'OpenEye OEToolkits'
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
'~{N}-[[1-(4-azanyl-1-phenoxy-cyclohexyl)carbonylpiperidin-4-yl]methyl]-2-chloranyl-ethanamide'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
ND9 'Create component' 2022-08-17 PDBE
ND9 'Initial release' 2023-09-20 RCSB
ND9 'Modify descriptor' 2023-09-23 RCSB
ND9 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id ND9
_pdbx_chem_comp_pcm.modified_residue_id CYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category 'Covalent chemical modification'
_pdbx_chem_comp_pcm.position 'Amino-acid side chain'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom C17
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
ND9 C15 C -4.825 -1.237 1
ND9 C12 C -0.926 -0.492 2
ND9 C11 C 0.375 1.756 3
ND9 C10 C 4.178 4.082 4
ND9 C13 C -2.226 -1.240 5
ND9 C14 C -3.525 -0.490 6
ND9 C9 C 5.657 4.339 7
ND9 C6 C 4.627 1.522 8
ND9 C7 C 6.105 1.782 9
ND9 C8 C 6.621 3.190 10
ND9 C3 C 3.149 0.742 11
ND9 C2 C 3.663 -0.666 12
ND9 C1 C 2.695 -1.817 13
ND9 C4 C 1.673 1.007 14
ND9 C5 C 3.665 2.673 15
ND9 N1 N 3.207 -3.226 16
ND9 O1 O 2.187 2.414 17
ND9 O2 O 0.376 3.256 18
ND9 N2 N -0.925 1.009 19
ND9 N3 N -4.826 -2.737 20
ND9 C16 C -6.126 -3.486 21
ND9 O3 O -7.424 -2.735 22
ND9 C17 C -6.127 -4.986 23
ND9 C18 C -3.523 1.011 24
ND9 C19 C -2.224 1.759 25
ND9 C20 C 0.706 -0.144 26
ND9 C21 C 1.220 -1.552 27
ND9 CL1 Cl -7.427 -5.735 28
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
ND9 C17 C16 SINGLE NONE 1
ND9 O3 C16 DOUBLE NONE 2
ND9 C16 N3 SINGLE NONE 3
ND9 N3 C15 SINGLE NONE 4
ND9 C14 C18 SINGLE NONE 5
ND9 C14 C13 SINGLE NONE 6
ND9 C14 C15 SINGLE NONE 7
ND9 C19 C18 SINGLE NONE 8
ND9 C19 N2 SINGLE NONE 9
ND9 C12 C13 SINGLE NONE 10
ND9 C12 N2 SINGLE NONE 11
ND9 C21 C20 SINGLE NONE 12
ND9 C21 C1 SINGLE NONE 13
ND9 N2 C11 SINGLE NONE 14
ND9 C20 C4 SINGLE NONE 15
ND9 C1 N1 SINGLE BEGINWEDGE 16
ND9 C11 O2 DOUBLE NONE 17
ND9 C11 C4 SINGLE NONE 18
ND9 C1 C2 SINGLE NONE 19
ND9 C4 O1 SINGLE BEGINDASH 20
ND9 C4 C3 SINGLE NONE 21
ND9 C2 C3 SINGLE NONE 22
ND9 O1 C5 SINGLE NONE 23
ND9 C5 C6 SINGLE NONE 24
ND9 C5 C10 DOUBLE NONE 25
ND9 C6 C7 DOUBLE NONE 26
ND9 C10 C9 SINGLE NONE 27
ND9 C7 C8 SINGLE NONE 28
ND9 C9 C8 DOUBLE NONE 29
ND9 C17 CL1 SINGLE NONE 30
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
ND9 MurckoScaffold S1 scaffold O=C(N1CCCCC1)C1(Oc2ccccc2)CCCCC1 InChI=1S/C18H25NO2/c20-17(19-14-8-3-9-15-19)18(12-6-2-7-13-18)21-16-10-4-1-5-11-16/h1,4-5,10-11H,2-3,6-9,12-15H2 SLKKCVOQWJVNKV-UHFFFAOYSA-N
ND9 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
ND9 cyclohexane F2 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
ND9 phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
ND9 C12 S1 1
ND9 C11 S1 1
ND9 C10 S1 1
ND9 C13 S1 1
ND9 C14 S1 1
ND9 C9 S1 1
ND9 C6 S1 1
ND9 C7 S1 1
ND9 C8 S1 1
ND9 C3 S1 1
ND9 C2 S1 1
ND9 C1 S1 1
ND9 C4 S1 1
ND9 C5 S1 1
ND9 O1 S1 1
ND9 O2 S1 1
ND9 N2 S1 1
ND9 C18 S1 1
ND9 C19 S1 1
ND9 C20 S1 1
ND9 C21 S1 1
ND9 N2 F1 1
ND9 C11 F1 1
ND9 O2 F1 1
ND9 C4 F1 1
ND9 N3 F1 2
ND9 C16 F1 2
ND9 O3 F1 2
ND9 C17 F1 2
ND9 C3 F2 1
ND9 C4 F2 1
ND9 C20 F2 1
ND9 C21 F2 1
ND9 C1 F2 1
ND9 C2 F2 1
ND9 C10 F3 1
ND9 C5 F3 1
ND9 C6 F3 1
ND9 C7 F3 1
ND9 C8 F3 1
ND9 C9 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id ND9
_pdbe_chem_comp_rdkit_properties.exactmw 407.198
_pdbe_chem_comp_rdkit_properties.amw 407.942
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 28
_pdbe_chem_comp_rdkit_properties.NumAtoms 58
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.619
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 213.607
_pdbe_chem_comp_rdkit_properties.tpsa 84.660
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.837
_pdbe_chem_comp_rdkit_properties.CrippenMR 108.668
_pdbe_chem_comp_rdkit_properties.chi0v 14.200
_pdbe_chem_comp_rdkit_properties.chi1v 7.475
_pdbe_chem_comp_rdkit_properties.chi2v 3.048
_pdbe_chem_comp_rdkit_properties.chi3v 3.048
_pdbe_chem_comp_rdkit_properties.chi4v 1.769
_pdbe_chem_comp_rdkit_properties.chi0n 43.444
_pdbe_chem_comp_rdkit_properties.chi1n 21.939
_pdbe_chem_comp_rdkit_properties.chi2n 2.886
_pdbe_chem_comp_rdkit_properties.chi3n 2.886
_pdbe_chem_comp_rdkit_properties.chi4n 1.727
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.790
_pdbe_chem_comp_rdkit_properties.kappa1 4.916
_pdbe_chem_comp_rdkit_properties.kappa2 9.611
_pdbe_chem_comp_rdkit_properties.kappa3 5.173
_pdbe_chem_comp_rdkit_properties.Phi 1.687
#
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
ND9 C15 4.482 0.817 -1.110 ETKDGv3 1
ND9 C12 0.731 0.790 -1.922 ETKDGv3 2
ND9 C11 -0.866 -0.946 -1.049 ETKDGv3 3
ND9 C10 -2.509 1.742 -0.780 ETKDGv3 4
ND9 C13 2.217 0.559 -2.247 ETKDGv3 5
ND9 C14 3.078 0.186 -1.009 ETKDGv3 6
ND9 C9 -2.856 3.148 -1.075 ETKDGv3 7
ND9 C6 -2.563 2.308 1.592 ETKDGv3 8
ND9 C7 -2.877 3.581 1.322 ETKDGv3 9
ND9 C8 -3.032 4.021 -0.078 ETKDGv3 10
ND9 C3 -3.303 -1.500 -0.572 ETKDGv3 11
ND9 C2 -4.390 -1.653 0.511 ETKDGv3 12
ND9 C1 -3.848 -2.241 1.840 ETKDGv3 13
ND9 C4 -1.915 -1.158 0.037 ETKDGv3 14
ND9 C5 -2.368 1.329 0.498 ETKDGv3 15
ND9 N1 -4.882 -3.001 2.546 ETKDGv3 16
ND9 O1 -2.026 0.013 0.867 ETKDGv3 17
ND9 O2 -0.991 -1.544 -2.153 ETKDGv3 18
ND9 N2 0.281 -0.098 -0.842 ETKDGv3 19
ND9 N3 5.405 0.248 -0.125 ETKDGv3 20
ND9 C16 6.741 0.744 0.020 ETKDGv3 21
ND9 O3 7.145 1.705 -0.691 ETKDGv3 22
ND9 C17 7.652 0.154 1.048 ETKDGv3 23
ND9 C18 2.378 0.585 0.306 ETKDGv3 24
ND9 C19 1.032 -0.143 0.423 ETKDGv3 25
ND9 C20 -1.459 -2.340 0.944 ETKDGv3 26
ND9 C21 -2.617 -3.127 1.599 ETKDGv3 27
ND9 H1 4.897 0.635 -2.126 ETKDGv3 28
ND9 H2 4.408 1.917 -0.958 ETKDGv3 29
ND9 H3 0.586 1.843 -1.596 ETKDGv3 30
ND9 H4 0.124 0.652 -2.843 ETKDGv3 31
ND9 H5 -2.359 1.082 -1.617 ETKDGv3 32
ND9 H6 2.601 1.483 -2.734 ETKDGv3 33
ND9 H7 2.298 -0.258 -2.996 ETKDGv3 34
ND9 H8 3.202 -0.921 -1.007 ETKDGv3 35
ND9 H9 -2.966 3.469 -2.103 ETKDGv3 36
ND9 H10 -2.449 1.990 2.621 ETKDGv3 37
ND9 H11 -3.018 4.289 2.128 ETKDGv3 38
ND9 H12 -3.285 5.051 -0.294 ETKDGv3 39
ND9 H13 -3.228 -2.458 -1.134 ETKDGv3 40
ND9 H14 -3.633 -0.735 -1.303 ETKDGv3 41
ND9 H15 -5.198 -2.297 0.099 ETKDGv3 42
ND9 H16 -4.841 -0.659 0.721 ETKDGv3 43
ND9 H17 -3.534 -1.400 2.500 ETKDGv3 44
ND9 H18 -5.221 -3.779 1.934 ETKDGv3 45
ND9 H19 -5.695 -2.368 2.728 ETKDGv3 46
ND9 H21 5.102 -0.548 0.480 ETKDGv3 47
ND9 H22 7.532 -0.949 1.071 ETKDGv3 48
ND9 H23 8.710 0.390 0.807 ETKDGv3 49
ND9 CL1 7.255 0.821 2.650 ETKDGv3 50
ND9 H25 3.004 0.319 1.185 ETKDGv3 51
ND9 H26 2.211 1.685 0.329 ETKDGv3 52
ND9 H27 0.442 0.319 1.240 ETKDGv3 53
ND9 H28 1.237 -1.204 0.685 ETKDGv3 54
ND9 H29 -0.847 -3.068 0.364 ETKDGv3 55
ND9 H30 -0.803 -1.949 1.753 ETKDGv3 56
ND9 H31 -2.268 -3.558 2.563 ETKDGv3 57
ND9 H32 -2.903 -3.975 0.938 ETKDGv3 58
#