Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : N40

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 78


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C03 C C1 N N N 0 -1.104 -1.667 -0.779
2 C04 C C2 N N N 0 -2.366 -2.372 -0.276
3 C05 C C3 N N N 0 -3.567 -1.437 -0.431
4 C06 C C4 N N N 0 -4.829 -2.142 0.071
5 C07 C C5 N N N 0 -6.031 -1.207 -0.084
6 C08 C C6 N N N 0 -7.293 -1.911 0.418
7 C09 C C7 N N N 0 -8.494 -0.977 0.263
8 C10 C C8 N N N 0 -9.756 -1.681 0.765
9 C12 C C9 S N N 0 2.006 -0.663 -0.493
10 C13 C C10 N N N 0 3.532 -0.543 -0.516
11 C14 C C11 N N N 0 4.146 -1.693 0.284
12 C15 C C12 N N N 0 3.756 -1.554 1.757
13 C16 C C13 N N N 0 4.371 -2.704 2.558
14 C17 C C14 N N N 0 5.894 -2.66 2.427
15 C18 C C15 N N N 0 6.284 -2.799 0.954
16 C19 C C16 N N N 0 5.669 -1.649 0.153
17 C20 C C17 N N N 0 1.399 0.519 -1.203
18 C22 C C18 S N N 0 1.043 2.918 -1.445
19 C23 C C19 N N N 0 0.835 4.06 -0.449
20 C24 C C20 S N N 0 -0.179 3.631 0.614
21 C25 C C21 N N N 0 -0.392 4.739 1.621
22 C27 C C22 N N N 0 -2.508 3.942 1.093
23 C28 C C23 N N N 0 -1.574 3.424 -0.022
24 C30 C C24 N N N 0 1.982 3.38 -2.562
25 N11 N N1 N N N 0 1.603 -1.898 -1.169
26 N21 N N2 N N N 0 1.634 1.769 -0.755
27 N26 N N3 N N N 0 -1.704 4.895 1.867
28 O01 O O1 N N N 0 0.621 -2.978 0.779
29 O29 O O2 N N N 0 0.493 5.392 2.133
30 O31 O O3 N N N 0 3.198 3.866 -1.99
31 O32 O O4 N N N 0 0.698 0.347 -2.178
32 O33 O O5 N N N 0 0.218 -3.873 -1.491
33 S02 S S1 N N N 0 0.321 -2.775 -0.595
34 H1 H H1 N N N 0 -1.227 -1.406 -1.829
35 H2 H H2 N N N 0 -0.937 -0.762 -0.196
36 H3 H H3 N N N 0 -2.533 -3.278 -0.859
37 H4 H H4 N N N 0 -2.242 -2.633 0.775
38 H5 H H5 N N N 0 -3.4 -0.531 0.151
39 H6 H H6 N N N 0 -3.691 -1.176 -1.482
40 H7 H H7 N N N 0 -4.996 -3.047 -0.512
41 H8 H H8 N N N 0 -4.706 -2.403 1.122
42 H9 H H9 N N N 0 -5.864 -0.301 0.499
43 H10 H H10 N N N 0 -6.154 -0.946 -1.135
44 H11 H H11 N N N 0 -7.459 -2.817 -0.165
45 H12 H H12 N N N 0 -7.169 -2.173 1.469
46 H13 H H13 N N N 0 -8.328 -0.071 0.846
47 H14 H H14 N N N 0 -8.618 -0.715 -0.788
48 H15 H H15 N N N 0 -10.612 -1.015 0.655
49 H16 H H16 N N N 0 -9.923 -2.587 0.182
50 H17 H H17 N N N 0 -9.633 -1.943 1.816
51 H18 H H18 N N N 0 1.659 -0.684 0.54
52 H19 H H19 N N N 0 3.884 -0.589 -1.547
53 H20 H H20 N N N 0 3.828 0.408 -0.073
54 H21 H H21 N N N 0 3.775 -2.643 -0.101
55 H22 H H22 N N N 0 4.127 -0.604 2.143
56 H23 H H23 N N N 0 2.671 -1.585 1.851
57 H24 H H24 N N N 0 4.093 -2.605 3.607
58 H25 H H25 N N N 0 4.0 -3.654 2.172
59 H26 H H26 N N N 0 6.265 -1.71 2.813
60 H27 H H27 N N N 0 6.332 -3.479 2.997
61 H28 H H28 N N N 0 7.369 -2.767 0.86
62 H29 H H29 N N N 0 5.913 -3.749 0.568
63 H30 H H30 N N N 0 5.947 -1.748 -0.896
64 H31 H H31 N N N 0 6.04 -0.699 0.539
65 H32 H H32 N N N 0 0.083 2.63 -1.874
66 H33 H H33 N N N 0 1.783 4.301 0.031
67 H34 H H34 N N N 0 0.461 4.938 -0.975
68 H35 H H35 N N N 0 0.152 2.719 1.111
69 H36 H H36 N N N 0 -3.373 4.444 0.658
70 H37 H H37 N N N 0 -2.832 3.117 1.728
71 H38 H H38 N N N 0 -1.681 4.019 -0.929
72 H39 H H39 N N N 0 -1.757 2.369 -0.226
73 H40 H H40 N N N 0 2.201 2.542 -3.223
74 H41 H H41 N N N 0 1.504 4.177 -3.132
75 H42 H H42 N N N 0 2.087 -2.203 -1.952
76 H43 H H43 N N N 0 2.195 1.907 0.024
77 H44 H H44 N N N 0 -2.072 5.554 2.477
78 H45 H H45 N N N 0 3.842 4.177 -2.641