data_N40
#
_chem_comp.id N40
_chem_comp.name
'3-cyclohexyl-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-N~2~-(octylsulfonyl)-L-alaninamide'
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C24 H45 N3 O5 S'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms
'3-cyclohexyl-N~2~-(octylsulfonyl)-N-{(2S)-1-oxo-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-alaninamide (bound form)'
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2016-09-12
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 487.696
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code N40
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5T6G
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
N40 C03 C1 C 0 1 N N N N N N 9.619 7.859 -8.846 -1.104 -1.667 -0.779 C03 N40 1
N40 C04 C2 C 0 1 N N N N N N 9.090 6.860 -9.870 -2.366 -2.372 -0.276 C04 N40 2
N40 C05 C3 C 0 1 N N N N N N 7.604 7.026 -10.148 -3.567 -1.437 -0.431 C05 N40 3
N40 C06 C4 C 0 1 N N N N N N 6.856 5.702 -10.289 -4.829 -2.142 0.071 C06 N40 4
N40 C07 C5 C 0 1 N N N N N N 5.397 5.922 -10.724 -6.031 -1.207 -0.084 C07 N40 5
N40 C08 C6 C 0 1 N N N N N N 4.521 4.679 -10.600 -7.293 -1.911 0.418 C08 N40 6
N40 C09 C7 C 0 1 N N N N N N 3.224 4.836 -11.380 -8.494 -0.977 0.263 C09 N40 7
N40 C10 C8 C 0 1 N N N N N N 2.167 3.807 -10.999 -9.756 -1.681 0.765 C10 N40 8
N40 C12 C9 C 0 1 N N S N N N 9.599 11.907 -8.572 2.006 -0.663 -0.493 C12 N40 9
N40 C13 C10 C 0 1 N N N N N N 9.469 12.717 -7.296 3.532 -0.543 -0.516 C13 N40 10
N40 C14 C11 C 0 1 N N N N N N 8.550 12.087 -6.265 4.146 -1.693 0.284 C14 N40 11
N40 C15 C12 C 0 1 N N N N N N 7.142 12.010 -6.852 3.756 -1.554 1.757 C15 N40 12
N40 C16 C13 C 0 1 N N N N N N 6.090 11.633 -5.805 4.371 -2.704 2.558 C16 N40 13
N40 C17 C14 C 0 1 N N N N N N 6.186 12.502 -4.550 5.894 -2.660 2.427 C17 N40 14
N40 C18 C15 C 0 1 N N N N N N 7.594 12.531 -3.967 6.284 -2.799 0.954 C18 N40 15
N40 C19 C16 C 0 1 N N N N N N 8.628 12.955 -5.001 5.669 -1.649 0.153 C19 N40 16
N40 C20 C17 C 0 1 N N N N N N 10.380 12.742 -9.572 1.399 0.519 -1.203 C20 N40 17
N40 C22 C18 C 0 1 N N S N N N 10.261 14.393 -11.447 1.043 2.918 -1.445 C22 N40 18
N40 C23 C19 C 0 1 N N N N N N 9.827 13.886 -12.831 0.835 4.060 -0.449 C23 N40 19
N40 C24 C20 C 0 1 N N S N N N 10.137 12.411 -13.115 -0.179 3.631 0.614 C24 N40 20
N40 C25 C21 C 0 1 N N N N N N 9.952 12.104 -14.536 -0.392 4.739 1.621 C25 N40 21
N40 C27 C22 C 0 1 N N N N N N 11.934 10.946 -13.830 -2.508 3.942 1.093 C27 N40 22
N40 C28 C23 C 0 1 N N N N N N 11.573 12.041 -12.788 -1.574 3.424 -0.022 C28 N40 23
N40 C30 C24 C 0 1 N N N N N N 9.872 15.865 -11.311 1.982 3.380 -2.562 C30 N40 24
N40 N11 N1 N 0 1 N N N N N N 10.233 10.626 -8.342 1.603 -1.898 -1.169 N11 N40 25
N40 N21 N2 N 0 1 N N N N N N 9.594 13.584 -10.453 1.634 1.769 -0.755 N21 N40 26
N40 N26 N3 N 0 1 N N N N N N 11.075 11.181 -14.961 -1.704 4.895 1.867 N26 N40 27
N40 O01 O1 O 0 1 N N N N N N 9.318 9.930 -10.670 0.621 -2.978 0.779 O01 N40 28
N40 O29 O2 O 0 1 N N N N N N 9.069 12.522 -15.215 0.493 5.392 2.133 O29 N40 29
N40 O31 O3 O 0 1 N N N N N N 10.371 16.349 -10.107 3.198 3.866 -1.990 O31 N40 30
N40 O32 O4 O 0 1 N N N N N N 11.561 12.705 -9.629 0.698 0.347 -2.178 O32 N40 31
N40 O33 O5 O 0 1 N N N N N N 11.430 9.273 -10.183 0.218 -3.873 -1.491 O33 N40 32
N40 S02 S1 S 0 1 N N N N N N 10.137 9.444 -9.561 0.321 -2.775 -0.595 S02 N40 33
N40 H1 H1 H 0 1 N N N N N N 8.824 8.054 -8.111 -1.227 -1.406 -1.829 H1 N40 34
N40 H2 H2 H 0 1 N N N N N N 10.485 7.409 -8.339 -0.937 -0.762 -0.196 H2 N40 35
N40 H3 H3 H 0 1 N N N N N N 9.264 5.843 -9.490 -2.533 -3.278 -0.859 H3 N40 36
N40 H4 H4 H 0 1 N N N N N N 9.641 6.999 -10.812 -2.242 -2.633 0.775 H4 N40 37
N40 H5 H5 H 0 1 N N N N N N 7.487 7.593 -11.083 -3.400 -0.531 0.151 H5 N40 38
N40 H6 H6 H 0 1 N N N N N N 7.156 7.592 -9.318 -3.691 -1.176 -1.482 H6 N40 39
N40 H7 H7 H 0 1 N N N N N N 6.865 5.181 -9.320 -4.996 -3.047 -0.512 H7 N40 40
N40 H8 H8 H 0 1 N N N N N N 7.364 5.083 -11.043 -4.706 -2.403 1.122 H8 N40 41
N40 H9 H9 H 0 1 N N N N N N 5.394 6.244 -11.776 -5.864 -0.301 0.499 H9 N40 42
N40 H10 H10 H 0 1 N N N N N N 4.964 6.715 -10.096 -6.154 -0.946 -1.135 H10 N40 43
N40 H11 H11 H 0 1 N N N N N N 4.283 4.513 -9.539 -7.459 -2.817 -0.165 H11 N40 44
N40 H12 H12 H 0 1 N N N N N N 5.072 3.812 -10.992 -7.169 -2.173 1.469 H12 N40 45
N40 H13 H13 H 0 1 N N N N N N 3.446 4.729 -12.452 -8.328 -0.071 0.846 H13 N40 46
N40 H14 H14 H 0 1 N N N N N N 2.820 5.841 -11.187 -8.618 -0.715 -0.788 H14 N40 47
N40 H15 H15 H 0 1 N N N N N N 1.259 3.975 -11.596 -10.612 -1.015 0.655 H15 N40 48
N40 H16 H16 H 0 1 N N N N N N 2.553 2.796 -11.195 -9.923 -2.587 0.182 H16 N40 49
N40 H17 H17 H 0 1 N N N N N N 1.927 3.907 -9.930 -9.633 -1.943 1.816 H17 N40 50
N40 H18 H18 H 0 1 N N N N N N 8.590 11.741 -8.978 1.659 -0.684 0.540 H18 N40 51
N40 H19 H19 H 0 1 N N N N N N 10.469 12.826 -6.850 3.884 -0.589 -1.547 H19 N40 52
N40 H20 H20 H 0 1 N N N N N N 9.073 13.710 -7.554 3.828 0.408 -0.073 H20 N40 53
N40 H21 H21 H 0 1 N N N N N N 8.903 11.072 -6.030 3.775 -2.643 -0.101 H21 N40 54
N40 H22 H22 H 0 1 N N N N N N 6.882 12.991 -7.276 4.127 -0.604 2.143 H22 N40 55
N40 H23 H23 H 0 1 N N N N N N 7.133 11.252 -7.650 2.671 -1.585 1.851 H23 N40 56
N40 H24 H24 H 0 1 N N N N N N 5.090 11.758 -6.247 4.093 -2.605 3.607 H24 N40 57
N40 H25 H25 H 0 1 N N N N N N 6.236 10.581 -5.519 4.000 -3.654 2.172 H25 N40 58
N40 H26 H26 H 0 1 N N N N N N 5.890 13.529 -4.809 6.265 -1.710 2.813 H26 N40 59
N40 H27 H27 H 0 1 N N N N N N 5.498 12.102 -3.791 6.332 -3.479 2.997 H27 N40 60
N40 H28 H28 H 0 1 N N N N N N 7.848 11.525 -3.601 7.369 -2.767 0.860 H28 N40 61
N40 H29 H29 H 0 1 N N N N N N 7.617 13.243 -3.128 5.913 -3.749 0.568 H29 N40 62
N40 H30 H30 H 0 1 N N N N N N 9.632 12.858 -4.563 5.947 -1.748 -0.896 H30 N40 63
N40 H31 H31 H 0 1 N N N N N N 8.448 14.005 -5.277 6.040 -0.699 0.539 H31 N40 64
N40 H32 H32 H 0 1 N N N N N N 11.353 14.296 -11.352 0.083 2.630 -1.874 H32 N40 65
N40 H33 H33 H 0 1 N N N N N N 10.339 14.494 -13.592 1.783 4.301 0.031 H33 N40 66
N40 H34 H34 H 0 1 N N N N N N 8.740 14.028 -12.919 0.461 4.938 -0.975 H34 N40 67
N40 H35 H35 H 0 1 N N N N N N 9.462 11.786 -12.512 0.152 2.719 1.111 H35 N40 68
N40 H36 H36 H 0 1 N N N N N N 11.752 9.945 -13.412 -3.373 4.444 0.658 H36 N40 69
N40 H37 H37 H 0 1 N N N N N N 12.990 11.033 -14.126 -2.832 3.117 1.728 H37 N40 70
N40 H38 H38 H 0 1 N N N N N N 11.650 11.645 -11.764 -1.681 4.019 -0.929 H38 N40 71
N40 H39 H39 H 0 1 N N N N N N 12.234 12.914 -12.895 -1.757 2.369 -0.226 H39 N40 72
N40 H40 H40 H 0 1 N N N N N N 10.299 16.439 -12.146 2.201 2.542 -3.223 H40 N40 73
N40 H41 H41 H 0 1 N N N N N N 8.776 15.961 -11.323 1.504 4.177 -3.132 H41 N40 74
N40 H42 H42 H 0 1 N N N N N N 9.820 10.236 -7.519 2.087 -2.203 -1.952 H42 N40 75
N40 H43 H43 H 0 1 N N N N N N 8.597 13.605 -10.373 2.195 1.907 0.024 H43 N40 76
N40 H44 H44 H 0 1 N N N N N N 11.199 10.798 -15.876 -2.072 5.554 2.477 H44 N40 77
N40 H45 H45 H 0 1 N N N N N N 10.135 17.264 -10.011 3.842 4.177 -2.641 H45 N40 78
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
N40 O29 C25 DOUB N N 1
N40 N26 C25 SING N N 2
N40 N26 C27 SING N N 3
N40 C25 C24 SING N N 4
N40 C27 C28 SING N N 5
N40 C24 C23 SING N N 6
N40 C24 C28 SING N N 7
N40 C23 C22 SING N N 8
N40 C22 C30 SING N N 9
N40 C22 N21 SING N N 10
N40 C09 C10 SING N N 11
N40 C09 C08 SING N N 12
N40 C30 O31 SING N N 13
N40 C07 C08 SING N N 14
N40 C07 C06 SING N N 15
N40 O01 S02 DOUB N N 16
N40 N21 C20 SING N N 17
N40 C06 C05 SING N N 18
N40 O33 S02 DOUB N N 19
N40 C05 C04 SING N N 20
N40 C04 C03 SING N N 21
N40 O32 C20 DOUB N N 22
N40 C20 C12 SING N N 23
N40 S02 C03 SING N N 24
N40 S02 N11 SING N N 25
N40 C12 N11 SING N N 26
N40 C12 C13 SING N N 27
N40 C13 C14 SING N N 28
N40 C15 C14 SING N N 29
N40 C15 C16 SING N N 30
N40 C14 C19 SING N N 31
N40 C16 C17 SING N N 32
N40 C19 C18 SING N N 33
N40 C17 C18 SING N N 34
N40 C03 H1 SING N N 35
N40 C03 H2 SING N N 36
N40 C04 H3 SING N N 37
N40 C04 H4 SING N N 38
N40 C05 H5 SING N N 39
N40 C05 H6 SING N N 40
N40 C06 H7 SING N N 41
N40 C06 H8 SING N N 42
N40 C07 H9 SING N N 43
N40 C07 H10 SING N N 44
N40 C08 H11 SING N N 45
N40 C08 H12 SING N N 46
N40 C09 H13 SING N N 47
N40 C09 H14 SING N N 48
N40 C10 H15 SING N N 49
N40 C10 H16 SING N N 50
N40 C10 H17 SING N N 51
N40 C12 H18 SING N N 52
N40 C13 H19 SING N N 53
N40 C13 H20 SING N N 54
N40 C14 H21 SING N N 55
N40 C15 H22 SING N N 56
N40 C15 H23 SING N N 57
N40 C16 H24 SING N N 58
N40 C16 H25 SING N N 59
N40 C17 H26 SING N N 60
N40 C17 H27 SING N N 61
N40 C18 H28 SING N N 62
N40 C18 H29 SING N N 63
N40 C19 H30 SING N N 64
N40 C19 H31 SING N N 65
N40 C22 H32 SING N N 66
N40 C23 H33 SING N N 67
N40 C23 H34 SING N N 68
N40 C24 H35 SING N N 69
N40 C27 H36 SING N N 70
N40 C27 H37 SING N N 71
N40 C28 H38 SING N N 72
N40 C28 H39 SING N N 73
N40 C30 H40 SING N N 74
N40 C30 H41 SING N N 75
N40 N11 H42 SING N N 76
N40 N21 H43 SING N N 77
N40 N26 H44 SING N N 78
N40 O31 H45 SING N N 79
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
N40 SMILES ACDLabs 12.01 'C(CCCCCCC)S(NC(CC1CCCCC1)C(NC(CO)CC2CCNC2=O)=O)(=O)=O'
N40 InChI InChI 1.03 'InChI=1S/C24H45N3O5S/c1-2-3-4-5-6-10-15-33(31,32)27-22(16-19-11-8-7-9-12-19)24(30)26-21(18-28)17-20-13-14-25-23(20)29/h19-22,27-28H,2-18H2,1H3,(H,25,29)(H,26,30)/t20-,21-,22-/m0/s1'
N40 InChIKey InChI 1.03 RZTXHLLGLPTYGI-FKBYEOEOSA-N
N40 SMILES_CANONICAL CACTVS 3.385 'CCCCCCCC[S](=O)(=O)N[C@@H](CC1CCCCC1)C(=O)N[C@H](CO)C[C@@H]2CCNC2=O'
N40 SMILES CACTVS 3.385 'CCCCCCCC[S](=O)(=O)N[CH](CC1CCCCC1)C(=O)N[CH](CO)C[CH]2CCNC2=O'
N40 SMILES_CANONICAL 'OpenEye OEToolkits' 2.0.6 'CCCCCCCCS(=O)(=O)N[C@@H](CC1CCCCC1)C(=O)N[C@@H](C[C@@H]2CCNC2=O)CO'
N40 SMILES 'OpenEye OEToolkits' 2.0.6 'CCCCCCCCS(=O)(=O)NC(CC1CCCCC1)C(=O)NC(CC2CCNC2=O)CO'
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
N40 'SYSTEMATIC NAME' ACDLabs 12.01 '3-cyclohexyl-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-N~2~-(octylsulfonyl)-L-alaninamide'
N40 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 2.0.6 '(2~{S})-3-cyclohexyl-2-(octylsulfonylamino)-~{N}-[(2~{S})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]propanamide'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
N40 'Create component' 2016-09-12 RCSB
N40 'Modify formula' 2016-09-14 RCSB
N40 'Initial release' 2016-11-23 RCSB
N40 'Modify synonyms' 2021-03-01 PDBE
N40 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id N40
_pdbx_chem_comp_synonyms.name
'3-cyclohexyl-N~2~-(octylsulfonyl)-N-{(2S)-1-oxo-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-alaninamide (bound form)'
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id N40
_pdbx_chem_comp_pcm.modified_residue_id CYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category Lipid/lipid-like
_pdbx_chem_comp_pcm.position 'Amino-acid side chain'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom C30
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#
_pdbe_chem_comp_synonyms.comp_id N40
_pdbe_chem_comp_synonyms.name
'3-cyclohexyl-N~2~-(octylsulfonyl)-N-{(2S)-1-oxo-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-alaninamide (bound form)'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
N40 C03 C 6.897 0.000 1
N40 C04 C 6.897 1.500 2
N40 C05 C 5.598 2.250 3
N40 C06 C 5.598 3.750 4
N40 C07 C 4.299 4.500 5
N40 C08 C 4.299 6.000 6
N40 C09 C 3.000 6.750 7
N40 C10 C 3.000 8.250 8
N40 C12 C 9.495 -3.000 9
N40 C13 C 8.196 -3.750 10
N40 C14 C 8.196 -5.250 11
N40 C15 C 6.897 -6.000 12
N40 C16 C 6.897 -7.500 13
N40 C17 C 8.196 -8.250 14
N40 C18 C 9.495 -7.500 15
N40 C19 C 9.495 -6.000 16
N40 C20 C 10.794 -3.750 17
N40 C22 C 13.392 -3.750 18
N40 C23 C 14.691 -3.000 19
N40 C24 C 15.990 -3.750 20
N40 C25 C 17.361 -3.140 21
N40 C27 C 17.614 -5.554 22
N40 C28 C 16.147 -5.242 23
N40 C30 C 13.392 -5.250 24
N40 N11 N 9.495 -1.500 25
N40 N21 N 12.093 -3.000 26
N40 N26 N 18.364 -4.255 27
N40 O01 O 8.946 0.549 28
N40 O29 O 17.673 -1.673 29
N40 O31 O 14.691 -6.000 30
N40 O32 O 10.794 -5.250 31
N40 O33 O 7.446 -2.049 32
N40 S02 S 8.196 -0.750 33
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
N40 O29 C25 DOUBLE NONE 1
N40 N26 C25 SINGLE NONE 2
N40 N26 C27 SINGLE NONE 3
N40 C25 C24 SINGLE NONE 4
N40 C27 C28 SINGLE NONE 5
N40 C24 C23 SINGLE BEGINWEDGE 6
N40 C24 C28 SINGLE NONE 7
N40 C22 C23 SINGLE BEGINWEDGE 8
N40 C22 C30 SINGLE NONE 9
N40 C22 N21 SINGLE NONE 10
N40 C09 C10 SINGLE NONE 11
N40 C09 C08 SINGLE NONE 12
N40 C30 O31 SINGLE NONE 13
N40 C07 C08 SINGLE NONE 14
N40 C07 C06 SINGLE NONE 15
N40 O01 S02 DOUBLE NONE 16
N40 N21 C20 SINGLE NONE 17
N40 C06 C05 SINGLE NONE 18
N40 O33 S02 DOUBLE NONE 19
N40 C05 C04 SINGLE NONE 20
N40 C04 C03 SINGLE NONE 21
N40 O32 C20 DOUBLE NONE 22
N40 C20 C12 SINGLE NONE 23
N40 S02 C03 SINGLE NONE 24
N40 S02 N11 SINGLE NONE 25
N40 C12 N11 SINGLE NONE 26
N40 C12 C13 SINGLE BEGINDASH 27
N40 C13 C14 SINGLE NONE 28
N40 C15 C14 SINGLE NONE 29
N40 C15 C16 SINGLE NONE 30
N40 C14 C19 SINGLE NONE 31
N40 C16 C17 SINGLE NONE 32
N40 C19 C18 SINGLE NONE 33
N40 C17 C18 SINGLE NONE 34
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
N40 MurckoScaffold S1 scaffold 'O=C(CCC1CCCCC1)NCC[C@@H]1CCNC1=O' InChI=1S/C15H26N2O2/c18-14(7-6-12-4-2-1-3-5-12)16-10-8-13-9-11-17-15(13)19/h12-13H,1-11H2,(H,16,18)(H,17,19)/t13-/m1/s1 KXCXOSKJBSVXSQ-CYBMUJFWSA-N
N40 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
N40 cyclohexane F2 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
N40 peptide F3 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
N40 Z55258068 F4 fragment CCCCS(=O)(=O)NC InChI=1S/C5H13NO2S/c1-3-4-5-9(7,8)6-2/h6H,3-5H2,1-2H3 CJUPBDDCEQLSBF-UHFFFAOYSA-N
N40 Z32016974 F5 fragment CNC(=O)CCC1CCCCC1 InChI=1S/C10H19NO/c1-11-10(12)8-7-9-5-3-2-4-6-9/h9H,2-8H2,1H3,(H,11,12) NKQAGLASNCWFIR-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
N40 C12 S1 1
N40 C13 S1 1
N40 C14 S1 1
N40 C15 S1 1
N40 C16 S1 1
N40 C17 S1 1
N40 C18 S1 1
N40 C19 S1 1
N40 C20 S1 1
N40 C22 S1 1
N40 C23 S1 1
N40 C24 S1 1
N40 C25 S1 1
N40 C27 S1 1
N40 C28 S1 1
N40 N21 S1 1
N40 N26 S1 1
N40 O29 S1 1
N40 O32 S1 1
N40 N21 F1 1
N40 C20 F1 1
N40 O32 F1 1
N40 C12 F1 1
N40 N26 F1 2
N40 C25 F1 2
N40 O29 F1 2
N40 C24 F1 2
N40 C14 F2 1
N40 C15 F2 1
N40 C16 F2 1
N40 C17 F2 1
N40 C18 F2 1
N40 C19 F2 1
N40 O32 F3 1
N40 C20 F3 1
N40 C12 F3 1
N40 N11 F3 1
N40 C06 F4 1
N40 C05 F4 1
N40 C04 F4 1
N40 C03 F4 1
N40 S02 F4 1
N40 O01 F4 1
N40 O33 F4 1
N40 N11 F4 1
N40 C12 F4 1
N40 C22 F5 1
N40 N21 F5 1
N40 C20 F5 1
N40 O32 F5 1
N40 C12 F5 1
N40 C13 F5 1
N40 C14 F5 1
N40 C15 F5 1
N40 C16 F5 1
N40 C17 F5 1
N40 C18 F5 1
N40 C19 F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id N40
_pdbe_chem_comp_rdkit_properties.exactmw 487.308
_pdbe_chem_comp_rdkit_properties.amw 487.707
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 18
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 33
_pdbe_chem_comp_rdkit_properties.NumAtoms 78
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.917
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 3
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 263.133
_pdbe_chem_comp_rdkit_properties.tpsa 124.600
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.609
_pdbe_chem_comp_rdkit_properties.CrippenMR 130.029
_pdbe_chem_comp_rdkit_properties.chi0v 16.608
_pdbe_chem_comp_rdkit_properties.chi1v 9.391
_pdbe_chem_comp_rdkit_properties.chi2v 3.539
_pdbe_chem_comp_rdkit_properties.chi3v 3.539
_pdbe_chem_comp_rdkit_properties.chi4v 2.172
_pdbe_chem_comp_rdkit_properties.chi0n 60.791
_pdbe_chem_comp_rdkit_properties.chi1n 30.200
_pdbe_chem_comp_rdkit_properties.chi2n 2.756
_pdbe_chem_comp_rdkit_properties.chi3n 2.756
_pdbe_chem_comp_rdkit_properties.chi4n 1.582
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.190
_pdbe_chem_comp_rdkit_properties.kappa1 4.987
_pdbe_chem_comp_rdkit_properties.kappa2 14.939
_pdbe_chem_comp_rdkit_properties.kappa3 10.734
_pdbe_chem_comp_rdkit_properties.Phi 2.258
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
N40 UniChem ZINC ZINC000584905783
N40 UniChem PubChem 137349784
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
N40 C03 2.709 0.339 0.313 ETKDGv3 1
N40 C04 3.546 1.618 0.426 ETKDGv3 2
N40 C05 4.652 1.702 -0.641 ETKDGv3 3
N40 C06 5.708 0.580 -0.571 ETKDGv3 4
N40 C07 6.432 0.444 0.783 ETKDGv3 5
N40 C08 7.141 1.720 1.271 ETKDGv3 6
N40 C09 8.262 2.177 0.327 ETKDGv3 7
N40 C10 9.040 3.346 0.924 ETKDGv3 8
N40 C12 -0.366 -1.238 0.194 ETKDGv3 9
N40 C13 -0.607 -2.717 -0.206 ETKDGv3 10
N40 C14 -1.231 -3.622 0.896 ETKDGv3 11
N40 C15 -0.972 -5.122 0.583 ETKDGv3 12
N40 C16 -2.097 -5.727 -0.265 ETKDGv3 13
N40 C17 -3.452 -5.683 0.470 ETKDGv3 14
N40 C18 -3.536 -4.567 1.528 ETKDGv3 15
N40 C19 -2.747 -3.326 1.098 ETKDGv3 16
N40 C20 -1.670 -0.500 0.376 ETKDGv3 17
N40 C22 -3.788 0.460 -0.656 ETKDGv3 18
N40 C23 -3.549 1.977 -0.832 ETKDGv3 19
N40 C24 -4.786 2.850 -0.505 ETKDGv3 20
N40 C25 -4.375 4.208 -0.068 ETKDGv3 21
N40 C27 -5.490 4.653 -2.074 ETKDGv3 22
N40 C28 -5.658 3.156 -1.748 ETKDGv3 23
N40 C30 -4.761 -0.128 -1.691 ETKDGv3 24
N40 N11 0.473 -1.137 1.403 ETKDGv3 25
N40 N21 -2.501 -0.234 -0.763 ETKDGv3 26
N40 N26 -4.776 5.227 -0.954 ETKDGv3 27
N40 O01 1.854 0.588 2.848 ETKDGv3 28
N40 O29 -3.742 4.446 0.996 ETKDGv3 29
N40 O31 -6.082 0.199 -1.361 ETKDGv3 30
N40 O32 -2.034 -0.132 1.527 ETKDGv3 31
N40 O33 0.417 1.517 1.099 ETKDGv3 32
N40 S02 1.332 0.379 1.454 ETKDGv3 33
N40 H1 2.320 0.234 -0.721 ETKDGv3 34
N40 H2 3.330 -0.548 0.555 ETKDGv3 35
N40 H3 3.985 1.698 1.443 ETKDGv3 36
N40 H4 2.878 2.496 0.289 ETKDGv3 37
N40 H5 5.156 2.688 -0.559 ETKDGv3 38
N40 H6 4.180 1.676 -1.647 ETKDGv3 39
N40 H7 6.458 0.752 -1.372 ETKDGv3 40
N40 H8 5.227 -0.391 -0.814 ETKDGv3 41
N40 H9 7.184 -0.371 0.697 ETKDGv3 42
N40 H10 5.707 0.117 1.558 ETKDGv3 43
N40 H11 7.580 1.500 2.269 ETKDGv3 44
N40 H12 6.405 2.540 1.414 ETKDGv3 45
N40 H13 8.964 1.336 0.141 ETKDGv3 46
N40 H14 7.832 2.503 -0.644 ETKDGv3 47
N40 H15 9.835 3.663 0.216 ETKDGv3 48
N40 H16 8.362 4.208 1.105 ETKDGv3 49
N40 H17 9.517 3.046 1.881 ETKDGv3 50
N40 H18 0.159 -0.770 -0.668 ETKDGv3 51
N40 H19 -1.227 -2.762 -1.128 ETKDGv3 52
N40 H20 0.386 -3.127 -0.496 ETKDGv3 53
N40 H21 -0.712 -3.412 1.857 ETKDGv3 54
N40 H22 0.001 -5.271 0.067 ETKDGv3 55
N40 H23 -0.906 -5.690 1.537 ETKDGv3 56
N40 H24 -1.847 -6.780 -0.518 ETKDGv3 57
N40 H25 -2.173 -5.163 -1.220 ETKDGv3 58
N40 H26 -3.633 -6.659 0.971 ETKDGv3 59
N40 H27 -4.261 -5.541 -0.280 ETKDGv3 60
N40 H28 -3.131 -4.937 2.496 ETKDGv3 61
N40 H29 -4.601 -4.293 1.694 ETKDGv3 62
N40 H30 -2.872 -2.548 1.880 ETKDGv3 63
N40 H31 -3.204 -2.939 0.160 ETKDGv3 64
N40 H32 -4.217 0.274 0.355 ETKDGv3 65
N40 H33 -2.724 2.253 -0.136 ETKDGv3 66
N40 H34 -3.171 2.192 -1.856 ETKDGv3 67
N40 H35 -5.398 2.387 0.301 ETKDGv3 68
N40 H36 -4.889 4.784 -3.000 ETKDGv3 69
N40 H37 -6.476 5.149 -2.192 ETKDGv3 70
N40 H38 -6.724 2.953 -1.507 ETKDGv3 71
N40 H39 -5.383 2.542 -2.631 ETKDGv3 72
N40 H40 -4.510 0.243 -2.710 ETKDGv3 73
N40 H41 -4.662 -1.238 -1.693 ETKDGv3 74
N40 H42 1.212 -1.878 1.374 ETKDGv3 75
N40 H43 -2.121 -0.438 -1.715 ETKDGv3 76
N40 H44 -4.536 6.238 -0.852 ETKDGv3 77
N40 H45 -6.648 -0.170 -2.088 ETKDGv3 78
#