Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : MGT

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 53


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 PG P PG N N N 0 1.209 0.371 6.774
2 O1G O O1G N N N 0 2.161 -0.702 6.412
3 O2G O O2G N N N 0 1.883 1.338 7.87
4 O3G O O3G N N Y 0 -0.129 -0.281 7.385
5 O3B O O3B N N N 0 0.839 1.225 5.46
6 PB P PB R N N 0 0.173 0.201 4.412
7 O1B O O1B N N N 0 1.14 -0.87 4.086
8 O2B O O2B N N N 0 -1.148 -0.449 5.063
9 O3A O O3A N N N 0 -0.224 0.992 3.067
10 PA P PA S N N 0 -0.881 -0.087 2.069
11 O1A O O1A N N N 0 0.102 -1.154 1.78
12 O2A O O2A N N N 0 -2.184 -0.732 2.759
13 O5' O O5* N N N 0 -1.304 0.639 0.696
14 C5' C C5* N N N 0 -1.877 -0.365 -0.142
15 C4' C C4* R N N 0 -2.303 0.262 -1.471
16 O4' O O4* N N N 0 -1.158 0.811 -2.158
17 C3' C C3* S N N 0 -2.856 -0.818 -2.426
18 O3' O O3* N N N 0 -4.284 -0.837 -2.389
19 C2' C C2* R N N 0 -2.355 -0.377 -3.822
20 O2' O O2* N N N 0 -3.459 -0.114 -4.69
21 C1' C C1* R N N 0 -1.557 0.914 -3.542
22 N9 N N9 N N N 0 -0.379 0.985 -4.409
23 C8 C C8 N N N 0 -0.07 2.056 -5.363
24 N7 N N7 N N N 0 1.204 1.675 -5.986
25 CM7 C CM7 N N N 0 1.935 2.424 -7.012
26 C5 C C5 N N N 0 1.586 0.445 -5.409
27 C6 C C6 N N N 0 2.707 -0.369 -5.626
28 O6 O O6 N N N 0 3.558 -0.051 -6.443
29 N1 N N1 N N N 0 2.829 -1.51 -4.916
30 C2 C C2 N N N 0 1.874 -1.853 -4.009
31 N2 N N2 N N N 0 2.014 -3.017 -3.296
32 N3 N N3 N N N 0 0.819 -1.097 -3.803
33 C4 C C4 N N N 0 0.642 0.052 -4.474
34 HOG2 H 2HOG N N N 0 2.089 0.789 8.639
35 HOG3 H 3HOG N N N 0 -0.72 0.45 7.607
36 HOB2 H 2HOB N N N 0 -1.751 0.281 5.259
37 HOA2 H 2HOA N N N 0 -2.799 -0.005 2.931
38 H5'1 H 1H5* N N N 0 -2.748 -0.797 0.35
39 H5'2 H 2H5* N N N 0 -1.14 -1.146 -0.329
40 H4' H H4* N N N 0 -3.051 1.037 -1.301
41 H3' H H3* N N N 0 -2.455 -1.798 -2.167
42 HO3' H *HO3 N N N 0 -4.57 -1.528 -3.002
43 H2' H H2* N N N 0 -1.706 -1.14 -4.253
44 HO2' H *HO2 N N N 0 -3.951 -0.942 -4.777
45 H1' H H1* N N N 0 -2.189 1.79 -3.69
46 H81 H 1H8 N N N 0 0.034 3.007 -4.841
47 H82 H 2H8 N N N 0 -0.852 2.124 -6.119
48 HM71 H 1HM7 N N N 0 2.846 1.887 -7.273
49 HM72 H 2HM7 N N N 0 1.309 2.531 -7.898
50 HM73 H 3HM7 N N N 0 2.192 3.411 -6.627
51 HN1 H HN1 N N N 0 3.597 -2.087 -5.052
52 HN21 H 1HN2 N N N 0 1.34 -3.272 -2.646
53 HN22 H 2HN2 N N N 0 2.787 -3.585 -3.441