Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : M7G

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 47


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 PA P PA N N N 0 -3.923 0.62 -0.367
2 O1A O O1A N N N 0 -3.792 -0.038 -1.686
3 O2A O O2A N N N 0 -4.841 1.934 -0.512
4 O3A O O3A N N N 0 -4.606 -0.399 0.676
5 O5' O O5' N N N 0 -2.465 1.04 0.171
6 PB P PB N N N 0 -5.803 -1.471 0.571
7 O1B O O1B N N N 0 -5.649 -2.263 -0.669
8 O2B O O2B N N N 0 -5.757 -2.454 1.845
9 O3B O O3B N N N 0 -7.215 -0.697 0.541
10 C5' C C5' N N N 0 -1.562 1.854 -0.581
11 C4' C C4' R N N 0 -0.274 2.059 0.218
12 O4' O O4' N N N 0 0.421 0.809 0.356
13 C3' C C3' S N N 0 0.662 3.023 -0.537
14 O3' O O3' N N N 0 0.933 4.181 0.255
15 C2' C C2' R N N 0 1.957 2.201 -0.754
16 O2' O O2' N N N 0 3.115 3.009 -0.538
17 C1' C C1' R N N 0 1.833 1.107 0.336
18 N9 N N9 N Y N 0 2.606 -0.081 -0.036
19 C8 C C8 N Y N 0 2.147 -1.152 -0.747
20 N7 N N7 N Y N 1 3.101 -2.024 -0.895
21 CM7 C CM7 N N N 0 2.98 -3.3 -1.604
22 C5 C C5 N Y N 0 4.225 -1.567 -0.291
23 C6 C C6 N N N 0 5.536 -2.076 -0.133
24 O6 O O6 N N N 0 5.846 -3.158 -0.601
25 N1 N N1 N N N 0 6.435 -1.332 0.548
26 C2 C C2 N N N 0 6.077 -0.123 1.066
27 N2 N N2 N N N 0 7.012 0.611 1.753
28 N3 N N3 N N N 0 4.863 0.361 0.927
29 C4 C C4 N Y N 0 3.921 -0.317 0.26
30 HOA2 H HOA2 N N N 0 -4.97 2.417 0.316
31 HOB2 H HOB2 N N N 0 -6.451 -3.127 1.849
32 HOB3 H HOB3 N N N 0 -7.384 -0.156 1.325
33 H5'1 H H5'1 N N N 0 -1.33 1.361 -1.525
34 H5'2 H H5'2 N N N 0 -2.025 2.82 -0.78
35 H4' H H4' N N N 0 -0.509 2.463 1.203
36 H3' H H3' N N N 0 0.225 3.309 -1.493
37 HO3' H HO3' N N N 0 1.518 4.822 -0.171
38 H2' H H2' N N N 0 1.974 1.759 -1.75
39 HO2' H HO2' N N N 0 3.188 3.762 -1.14
40 H1' H H1' N N N 0 2.159 1.49 1.303
41 H81 H H81 N N N 0 1.143 -1.26 -1.129
42 HM71 H HM71 N N N 0 3.234 -3.158 -2.655
43 HM72 H HM72 N N N 0 3.661 -4.028 -1.162
44 HM73 H HM73 N N N 0 1.956 -3.665 -1.524
45 HN1 H HN1 N N N 0 7.34 -1.66 0.669
46 HN21 H HN21 N N N 0 7.912 0.267 1.864
47 HN22 H HN22 N N N 0 6.772 1.473 2.128