Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : LYP

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 36


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N N N N N N 0 3.328 1.685 0.554
2 CA C CA S N N 0 3.24 0.219 0.587
3 CB C CB N N N 0 2.002 -0.235 -0.188
4 CG C CG N N N 0 0.743 0.262 0.526
5 CD C CD N N N 0 -0.495 -0.192 -0.249
6 CE C CE N N N 0 -1.754 0.305 0.465
7 NZ N NZ N N N 0 -2.944 -0.131 -0.279
8 CM C CM N N N 0 -3.009 0.517 -1.595
9 C C C N N N 0 4.474 -0.372 -0.045
10 O O O N N N 0 5.153 0.297 -0.788
11 CCA C CCA N N N 0 -6.628 -0.305 0.61
12 CCC C CCC N N N 0 -5.352 -0.566 -0.193
13 CCD C CCD N N N 0 -4.168 0.119 0.492
14 HA H HA N N N 0 3.166 -0.117 1.621
15 OXT O OXT N N Y 0 4.818 -1.643 0.216
16 H H HN1 N N N 0 3.399 2.022 -0.395
17 H2 H HN2 N N Y 0 2.544 2.105 1.029
18 HBC1 H HBC1 N N N 0 2.034 0.175 -1.197
19 HBC2 H HBC2 N N N 0 1.985 -1.324 -0.239
20 HGC1 H HGC1 N N N 0 0.711 -0.148 1.535
21 HGC2 H HGC2 N N N 0 0.761 1.351 0.577
22 HDC1 H HDC1 N N N 0 -0.464 0.218 -1.258
23 HDC2 H HDC2 N N N 0 -0.513 -1.281 -0.3
24 HEC1 H HEC1 N N N 0 -1.786 -0.105 1.474
25 HEC2 H HEC2 N N N 0 -1.737 1.394 0.516
26 HMC1 H HMC1 N N N 0 -2.121 0.258 -2.173
27 HMC2 H HMC2 N N N 0 -3.898 0.177 -2.125
28 HMC3 H HMC3 N N N 0 -3.055 1.599 -1.466
29 HCD1 H HCD1 N N N 0 -4.051 -0.28 1.5
30 HCD2 H HCD2 N N N 0 -4.351 1.192 0.546
31 HXT H HOT N N Y 0 5.617 -1.979 -0.213
32 HCC1 H HCC1 N N N 0 -5.169 -1.639 -0.247
33 HCA1 H HCA1 N N N 0 -6.81 0.768 0.664
34 HCA2 H HCA2 N N N 0 -7.471 -0.794 0.122
35 HCA3 H HCA3 N N Y 0 -6.51 -0.704 1.618
36 HCC2 H HCC2 N N N 0 -5.469 -0.167 -1.201