Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : LY5

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 48


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 F2 F F2 N N N 0 -5.044 1.171 0.175
2 C15 C C15 N N N 0 -4.343 0.374 -0.736
3 F1 F F1 N N N 0 -4.992 0.353 -1.975
4 C14 C C14 N N N 0 -4.162 -1.064 -0.182
5 C12 C C12 S N N 0 -2.923 -0.894 0.731
6 C13 C C13 N N N 0 -2.218 -2.214 0.91
7 O4 O O4 N N N 0 -1.077 -2.345 0.536
8 O3 O O3 N N N 0 -2.859 -3.245 1.484
9 C16 C C16 N N N 0 -2.89 0.872 -0.89
10 N2 N N2 N N N 0 -2.052 0.061 0.013
11 C11 C C11 N N N 0 -1.316 0.914 0.955
12 C7 C C7 S N N 0 -0.15 1.588 0.228
13 C6 C C6 N N N 0 0.856 0.526 -0.217
14 C8 C C8 N N N 0 0.537 2.576 1.173
15 C9 C C9 N N N 0 1.698 3.253 0.443
16 C4 C C4 R N N 0 2.705 2.196 -0.01
17 C5 C C5 R N N 0 2.021 1.198 -0.948
18 C3 C C3 N N N 0 3.255 1.45 1.207
19 N1 N N1 N N N 0 4.218 0.434 0.764
20 C1 C C1 S N N 0 3.58 -0.561 -0.108
21 C2 C C2 N N N 0 3.037 0.129 -1.362
22 C10 C C10 N N N 0 4.593 -1.603 -0.506
23 HO3 H HO3 N N N 0 -2.366 -4.071 1.577
24 O1 O O1 N N N 0 5.773 -1.359 -0.426
25 O2 O O2 N N N 0 4.183 -2.801 -0.951
26 H141 H H141 N N N 0 -5.034 -1.371 0.396
27 H142 H H142 N N N 0 -3.961 -1.77 -0.987
28 H12 H H12 N N N 0 -3.217 -0.488 1.699
29 H161 H H161 N N N 0 -2.56 0.74 -1.921
30 H162 H H162 N N N 0 -2.826 1.923 -0.61
31 H111 H H111 N N N 0 -1.985 1.676 1.355
32 H112 H H112 N N N 0 -0.93 0.304 1.772
33 H7 H H7 N N N 0 -0.526 2.122 -0.645
34 H82 H H82 N N N 0 0.916 2.042 2.045
35 H61 H H61 N N N 0 1.234 -0.005 0.657
36 H62 H H62 N N N 0 0.366 -0.18 -0.887
37 H81 H H81 N N N 0 -0.181 3.332 1.494
38 H91 H H91 N N N 0 1.317 3.788 -0.427
39 H92 H H92 N N N 0 2.189 3.957 1.115
40 H4 H H4 N N N 0 3.526 2.681 -0.539
41 H5 H H5 N N N 0 1.649 1.712 -1.834
42 H31 H H31 N N N 0 3.752 2.156 1.872
43 H32 H H32 N N N 0 2.435 0.967 1.738
44 HN1 H HN1 N N N 0 4.664 -0.01 1.553
45 H1 H H1 N N N 0 2.759 -1.038 0.427
46 H21 H H21 N N N 0 2.551 -0.608 -2.001
47 H22 H H22 N N N 0 3.859 0.597 -1.904
48 HO2 H HO2 N N N 0 4.87 -3.437 -1.195