data_LY5
#
_chem_comp.id LY5
_chem_comp.name
"(3S,4aR,6S,8aR)-6-{[(2S)-2-carboxy-4,4-difluoropyrrolidin-1-yl]methyl}decahydroisoquinoline-3-carboxylic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C16 H24 F2 N2 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms LY466195
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2007-09-11
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 346.370
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code LY5
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2QS4
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LY5 F2 F2 F 0 1 N N N N N N -16.335 27.284 -17.551 -5.044 1.171 0.175 F2 LY5 1
LY5 C15 C15 C 0 1 N N N N N N -17.650 27.079 -17.644 -4.343 0.374 -0.736 C15 LY5 2
LY5 F1 F1 F 0 1 N N N N N N -17.878 27.349 -18.892 -4.992 0.353 -1.975 F1 LY5 3
LY5 C14 C14 C 0 1 N N N N N N -18.496 27.907 -16.667 -4.162 -1.064 -0.182 C14 LY5 4
LY5 C12 C12 C 0 1 N N S N N N -18.492 26.995 -15.445 -2.923 -0.894 0.731 C12 LY5 5
LY5 C13 C13 C 0 1 N N N N N N -19.494 27.302 -14.327 -2.218 -2.214 0.910 C13 LY5 6
LY5 O4 O4 O 0 1 N N N N N N -20.685 26.995 -14.402 -1.077 -2.345 0.536 O4 LY5 7
LY5 O3 O3 O 0 1 N N N N N N -19.106 27.806 -13.278 -2.859 -3.245 1.484 O3 LY5 8
LY5 C16 C16 C 0 1 N N N N N N -17.989 25.617 -17.309 -2.890 0.872 -0.890 C16 LY5 9
LY5 N2 N2 N 0 1 N N N N N N -18.698 25.646 -16.012 -2.052 0.061 0.013 N2 LY5 10
LY5 C11 C11 C 0 1 N N N N N N -18.185 24.686 -15.036 -1.316 0.914 0.955 C11 LY5 11
LY5 C7 C7 C 0 1 N N S N N N -18.319 23.250 -15.532 -0.150 1.588 0.228 C7 LY5 12
LY5 C6 C6 C 0 1 N N N N N N -19.726 22.650 -15.336 0.856 0.526 -0.217 C6 LY5 13
LY5 C8 C8 C 0 1 N N N N N N -17.330 22.479 -14.655 0.537 2.576 1.173 C8 LY5 14
LY5 C9 C9 C 0 1 N N N N N N -17.355 20.993 -15.064 1.698 3.253 0.443 C9 LY5 15
LY5 C4 C4 C 0 1 N N R N N N -18.780 20.400 -14.905 2.705 2.196 -0.010 C4 LY5 16
LY5 C5 C5 C 0 1 N N R N N N -19.791 21.172 -15.759 2.021 1.198 -0.948 C5 LY5 17
LY5 C3 C3 C 0 1 N N N N N N -19.214 20.265 -13.456 3.255 1.450 1.207 C3 LY5 18
LY5 N1 N1 N 0 1 N N N N N N -20.545 19.572 -13.396 4.218 0.434 0.764 N1 LY5 19
LY5 C1 C1 C 0 1 N N S N N N -21.610 20.303 -14.153 3.580 -0.561 -0.108 C1 LY5 20
LY5 C2 C2 C 0 1 N N N N N N -21.183 20.564 -15.609 3.037 0.129 -1.362 C2 LY5 21
LY5 C10 C10 C 0 1 N N N N N N -22.850 19.461 -14.103 4.593 -1.603 -0.506 C10 LY5 22
LY5 O1 O1 O 0 1 N N N N N N -23.914 19.957 -14.608 5.773 -1.359 -0.426 O1 LY5 23
LY5 O2 O2 O 0 1 N N N N N N -22.820 18.326 -13.609 4.183 -2.801 -0.951 O2 LY5 24
LY5 H141 H141 H 0 0 N N N N N N -18.028 28.879 -16.449 -5.034 -1.371 0.396 H141 LY5 25
LY5 H142 H142 H 0 0 N N N N N N -19.515 28.068 -17.049 -3.961 -1.770 -0.987 H142 LY5 26
LY5 H12 H12 H 0 1 N N N N N N -17.484 27.032 -15.006 -3.217 -0.488 1.699 H12 LY5 27
LY5 HO3 HO3 H 0 1 N N N N N N -19.834 27.876 -12.671 -2.366 -4.071 1.577 HO3 LY5 28
LY5 H161 H161 H 0 0 N N N N N N -18.636 25.187 -18.088 -2.560 0.740 -1.921 H161 LY5 29
LY5 H162 H162 H 0 0 N N N N N N -17.068 25.021 -17.227 -2.826 1.923 -0.610 H162 LY5 30
LY5 H111 H111 H 0 0 N N N N N N -17.122 24.901 -14.849 -1.985 1.676 1.355 H111 LY5 31
LY5 H112 H112 H 0 0 N N N N N N -18.751 24.794 -14.099 -0.930 0.304 1.772 H112 LY5 32
LY5 H7 H7 H 0 1 N N N N N N -18.023 23.182 -16.589 -0.526 2.122 -0.645 H7 LY5 33
LY5 H61 H61 H 0 1 N N N N N N -20.443 23.224 -15.941 1.234 -0.005 0.657 H61 LY5 34
LY5 H62 H62 H 0 1 N N N N N N -19.999 22.727 -14.273 0.366 -0.180 -0.887 H62 LY5 35
LY5 H81 H81 H 0 1 N N N N N N -16.317 22.884 -14.796 -0.181 3.332 1.494 H81 LY5 36
LY5 H82 H82 H 0 1 N N N N N N -17.620 22.576 -13.598 0.916 2.042 2.045 H82 LY5 37
LY5 H91 H91 H 0 1 N N N N N N -16.658 20.432 -14.425 1.317 3.788 -0.427 H91 LY5 38
LY5 H92 H92 H 0 1 N N N N N N -17.043 20.903 -16.115 2.189 3.957 1.115 H92 LY5 39
LY5 H4 H4 H 0 1 N N N N N N -18.737 19.381 -15.317 3.526 2.681 -0.539 H4 LY5 40
LY5 H5 H5 H 0 1 N N N N N N -19.487 21.098 -16.814 1.649 1.712 -1.834 H5 LY5 41
LY5 H31 H31 H 0 1 N N N N N N -18.468 19.675 -12.903 3.752 2.156 1.872 H31 LY5 42
LY5 H32 H32 H 0 1 N N N N N N -19.300 21.264 -13.004 2.435 0.967 1.738 H32 LY5 43
LY5 HN1 HN1 H 0 1 N N N N N N -20.825 19.499 -12.439 4.664 -0.010 1.553 HN1 LY5 44
LY5 H1 H1 H 0 1 N N N N N N -21.807 21.268 -13.664 2.759 -1.038 0.427 H1 LY5 45
LY5 H21 H21 H 0 1 N N N N N N -21.910 21.254 -16.062 2.551 -0.608 -2.001 H21 LY5 46
LY5 H22 H22 H 0 1 N N N N N N -21.200 19.606 -16.149 3.859 0.597 -1.904 H22 LY5 47
LY5 HO2 HO2 H 0 1 N N N N N N -23.680 17.928 -13.675 4.870 -3.437 -1.195 HO2 LY5 48
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LY5 F1 C15 SING N N 1
LY5 C15 F2 SING N N 2
LY5 C15 C16 SING N N 3
LY5 C15 C14 SING N N 4
LY5 C16 N2 SING N N 5
LY5 C14 C12 SING N N 6
LY5 N2 C12 SING N N 7
LY5 N2 C11 SING N N 8
LY5 C5 C2 SING N N 9
LY5 C5 C6 SING N N 10
LY5 C5 C4 SING N N 11
LY5 C2 C1 SING N N 12
LY5 C7 C6 SING N N 13
LY5 C7 C11 SING N N 14
LY5 C7 C8 SING N N 15
LY5 C12 C13 SING N N 16
LY5 C9 C4 SING N N 17
LY5 C9 C8 SING N N 18
LY5 C4 C3 SING N N 19
LY5 O1 C10 DOUB N N 20
LY5 O4 C13 DOUB N N 21
LY5 C13 O3 SING N N 22
LY5 C1 C10 SING N N 23
LY5 C1 N1 SING N N 24
LY5 C10 O2 SING N N 25
LY5 C3 N1 SING N N 26
LY5 C14 H141 SING N N 27
LY5 C14 H142 SING N N 28
LY5 C12 H12 SING N N 29
LY5 O3 HO3 SING N N 30
LY5 C16 H161 SING N N 31
LY5 C16 H162 SING N N 32
LY5 C11 H111 SING N N 33
LY5 C11 H112 SING N N 34
LY5 C7 H7 SING N N 35
LY5 C6 H61 SING N N 36
LY5 C6 H62 SING N N 37
LY5 C8 H81 SING N N 38
LY5 C8 H82 SING N N 39
LY5 C9 H91 SING N N 40
LY5 C9 H92 SING N N 41
LY5 C4 H4 SING N N 42
LY5 C5 H5 SING N N 43
LY5 C3 H31 SING N N 44
LY5 C3 H32 SING N N 45
LY5 N1 HN1 SING N N 46
LY5 C1 H1 SING N N 47
LY5 C2 H21 SING N N 48
LY5 C2 H22 SING N N 49
LY5 O2 HO2 SING N N 50
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LY5 SMILES ACDLabs 12.01 FC1(CN(C(C1)C(O)=O)CC2CC3C(CC2)CNC(C(O)=O)C3)F
LY5 InChI InChI 1.03 InChI=1S/C16H24F2N2O4/c17-16(18)5-13(15(23)24)20(8-16)7-9-1-2-10-6-19-12(14(21)22)4-11(10)3-9/h9-13,19H,1-8H2,(H,21,22)(H,23,24)/t9-,10-,11+,12-,13-/m0/s1
LY5 InChIKey InChI 1.03 OXQXJYQSWZFDBB-WJTVCTBASA-N
LY5 SMILES_CANONICAL CACTVS 3.385 OC(=O)[C@@H]1C[C@H]2C[C@H](CC[C@H]2CN1)CN3CC(F)(F)C[C@H]3C(O)=O
LY5 SMILES CACTVS 3.385 OC(=O)[CH]1C[CH]2C[CH](CC[CH]2CN1)CN3CC(F)(F)C[CH]3C(O)=O
LY5 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 C1C[C@H]2CN[C@@H](C[C@H]2C[C@H]1CN3CC(C[C@H]3C(=O)O)(F)F)C(=O)O
LY5 SMILES "OpenEye OEToolkits" 1.7.6 C1CC2CNC(CC2CC1CN3CC(CC3C(=O)O)(F)F)C(=O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
LY5 "SYSTEMATIC NAME" ACDLabs 12.01 "(3S,4aR,6S,8aR)-6-{[(2S)-2-carboxy-4,4-difluoropyrrolidin-1-yl]methyl}decahydroisoquinoline-3-carboxylic acid"
LY5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(3S,4aR,6S,8aR)-6-[[(2S)-2-carboxy-4,4-bis(fluoranyl)pyrrolidin-1-yl]methyl]-1,2,3,4,4a,5,6,7,8,8a-decahydroisoquinoline-3-carboxylic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LY5 'Create component' 2007-09-11 RCSB
LY5 'Modify descriptor' 2011-06-04 RCSB
LY5 'Modify synonyms' 2015-07-29 RCSB
LY5 'Modify processing site' 2015-07-29 RCSB
LY5 'Modify synonyms' 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id LY5
_pdbx_chem_comp_synonyms.name LY466195
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id LY5
_pdbe_chem_comp_synonyms.name LY466195
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
LY5 F2 F 3.356 -2.641 1
LY5 C15 C 4.658 -1.896 2
LY5 F1 F 4.964 -3.365 3
LY5 C14 C 3.913 -0.594 4
LY5 C12 C 4.921 0.517 5
LY5 C13 C 4.615 1.985 6
LY5 O4 O 3.190 2.454 7
LY5 O3 O 5.733 2.984 8
LY5 C16 C 6.126 -1.590 9
LY5 N2 N 6.289 -0.099 10
LY5 C11 C 7.591 0.646 11
LY5 C7 C 8.887 -0.109 12
LY5 C6 C 10.246 0.662 13
LY5 C8 C 8.887 -1.671 14
LY5 C9 C 10.246 -2.442 15
LY5 C4 C 11.587 -1.640 16
LY5 C5 C 11.587 -0.140 17
LY5 C3 C 12.886 -2.390 18
LY5 N1 N 14.185 -1.640 19
LY5 C1 C 14.185 -0.140 20
LY5 C2 C 12.886 0.610 21
LY5 C10 C 15.484 0.610 22
LY5 O1 O 15.484 2.110 23
LY5 O2 O 16.783 -0.140 24
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
LY5 F1 C15 SINGLE NONE 1
LY5 C15 F2 SINGLE NONE 2
LY5 C15 C16 SINGLE NONE 3
LY5 C15 C14 SINGLE NONE 4
LY5 C16 N2 SINGLE NONE 5
LY5 C14 C12 SINGLE NONE 6
LY5 N2 C12 SINGLE NONE 7
LY5 N2 C11 SINGLE NONE 8
LY5 C5 C2 SINGLE NONE 9
LY5 C5 C6 SINGLE NONE 10
LY5 C5 C4 SINGLE NONE 11
LY5 C2 C1 SINGLE NONE 12
LY5 C7 C6 SINGLE NONE 13
LY5 C7 C11 SINGLE BEGINDASH 14
LY5 C7 C8 SINGLE NONE 15
LY5 C12 C13 SINGLE BEGINWEDGE 16
LY5 C9 C4 SINGLE NONE 17
LY5 C9 C8 SINGLE NONE 18
LY5 C4 C3 SINGLE NONE 19
LY5 O1 C10 DOUBLE NONE 20
LY5 O4 C13 DOUBLE NONE 21
LY5 C13 O3 SINGLE NONE 22
LY5 C1 C10 SINGLE BEGINWEDGE 23
LY5 C1 N1 SINGLE NONE 24
LY5 C10 O2 SINGLE NONE 25
LY5 C3 N1 SINGLE NONE 26
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
LY5 MurckoScaffold S1 scaffold 'C1CCN(C[C@H]2CC[C@H]3CNCC[C@H]3C2)C1' InChI=1S/C14H26N2/c1-2-8-16(7-1)11-12-3-4-14-10-15-6-5-13(14)9-12/h12-15H,1-11H2/t12-,13-,14-/m0/s1 OAZICPWBAFFFQL-IHRRRGAJSA-N
LY5 cyclohexane F1 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
LY5 peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
LY5 Z2856434901 F3 fragment CNCCC1CCCCC1 InChI=1S/C9H19N/c1-10-8-7-9-5-3-2-4-6-9/h9-10H,2-8H2,1H3 KCYFTGSOYOWCJF-UHFFFAOYSA-N
LY5 Z2856434905 F4 fragment 'CN1CCC[C@@H]1CO' InChI=1S/C6H13NO/c1-7-4-2-3-6(7)5-8/h6,8H,2-5H2,1H3/t6-/m1/s1 VCOJPHPOVDIRJK-ZCFIWIBFSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
LY5 C15 S1 1
LY5 C14 S1 1
LY5 C12 S1 1
LY5 C16 S1 1
LY5 N2 S1 1
LY5 C11 S1 1
LY5 C7 S1 1
LY5 C6 S1 1
LY5 C8 S1 1
LY5 C9 S1 1
LY5 C4 S1 1
LY5 C5 S1 1
LY5 C3 S1 1
LY5 N1 S1 1
LY5 C1 S1 1
LY5 C2 S1 1
LY5 C7 F1 1
LY5 C6 F1 1
LY5 C5 F1 1
LY5 C4 F1 1
LY5 C9 F1 1
LY5 C8 F1 1
LY5 O4 F2 1
LY5 C13 F2 1
LY5 C12 F2 1
LY5 N2 F2 1
LY5 O1 F2 2
LY5 C10 F2 2
LY5 C1 F2 2
LY5 N1 F2 2
LY5 C3 F3 1
LY5 N1 F3 1
LY5 C1 F3 1
LY5 C2 F3 1
LY5 C5 F3 1
LY5 C6 F3 1
LY5 C7 F3 1
LY5 C8 F3 1
LY5 C9 F3 1
LY5 C4 F3 1
LY5 C11 F4 1
LY5 N2 F4 1
LY5 C16 F4 1
LY5 C15 F4 1
LY5 C14 F4 1
LY5 C12 F4 1
LY5 C13 F4 1
LY5 O3 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id LY5
_pdbe_chem_comp_rdkit_properties.exactmw 346.170
_pdbe_chem_comp_rdkit_properties.amw 346.374
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 24
_pdbe_chem_comp_rdkit_properties.NumAtoms 48
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 8
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.875
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 3
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 5
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 172.699
_pdbe_chem_comp_rdkit_properties.tpsa 89.870
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.260
_pdbe_chem_comp_rdkit_properties.CrippenMR 80.925
_pdbe_chem_comp_rdkit_properties.chi0v 11.283
_pdbe_chem_comp_rdkit_properties.chi1v 6.062
_pdbe_chem_comp_rdkit_properties.chi2v 2.697
_pdbe_chem_comp_rdkit_properties.chi3v 2.697
_pdbe_chem_comp_rdkit_properties.chi4v 1.761
_pdbe_chem_comp_rdkit_properties.chi0n 35.283
_pdbe_chem_comp_rdkit_properties.chi1n 17.826
_pdbe_chem_comp_rdkit_properties.chi2n 2.697
_pdbe_chem_comp_rdkit_properties.chi3n 2.697
_pdbe_chem_comp_rdkit_properties.chi4n 1.761
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.280
_pdbe_chem_comp_rdkit_properties.kappa1 4.516
_pdbe_chem_comp_rdkit_properties.kappa2 6.554
_pdbe_chem_comp_rdkit_properties.kappa3 3.691
_pdbe_chem_comp_rdkit_properties.Phi 1.233
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
LY5 UniChem ZINC ZINC000003989289
LY5 UniChem fdasrs O46A5T721G
LY5 UniChem SureChEMBL SCHEMBL14601459
LY5 UniChem 'PubChem TPHARMA' 24432159
LY5 UniChem 'Probes And Drugs' PD129313
LY5 UniChem BindingDb 50200526
LY5 UniChem PubChem 9935648
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
LY5 F2 4.883 -3.825 0.592 ETKDGv3 1
LY5 C15 4.155 -3.004 -0.253 ETKDGv3 2
LY5 F1 3.828 -3.702 -1.405 ETKDGv3 3
LY5 C14 4.937 -1.745 -0.606 ETKDGv3 4
LY5 C12 3.996 -0.581 -0.279 ETKDGv3 5
LY5 C13 3.974 0.433 -1.386 ETKDGv3 6
LY5 O4 4.636 1.500 -1.277 ETKDGv3 7
LY5 O3 3.253 0.180 -2.549 ETKDGv3 8
LY5 C16 2.892 -2.506 0.429 ETKDGv3 9
LY5 N2 2.657 -1.154 -0.087 ETKDGv3 10
LY5 C11 1.790 -0.331 0.792 ETKDGv3 11
LY5 C7 0.383 -0.199 0.177 ETKDGv3 12
LY5 C6 -0.455 0.846 0.937 ETKDGv3 13
LY5 C8 -0.357 -1.561 0.130 ETKDGv3 14
LY5 C9 -1.894 -1.434 0.159 ETKDGv3 15
LY5 C4 -2.378 -0.131 -0.502 ETKDGv3 16
LY5 C5 -1.785 1.133 0.199 ETKDGv3 17
LY5 C3 -3.923 -0.089 -0.561 ETKDGv3 18
LY5 N1 -4.401 1.286 -0.752 ETKDGv3 19
LY5 C1 -4.141 2.122 0.441 ETKDGv3 20
LY5 C2 -2.805 1.776 1.157 ETKDGv3 21
LY5 C10 -4.192 3.580 0.067 ETKDGv3 22
LY5 O1 -5.162 4.294 0.439 ETKDGv3 23
LY5 O2 -3.179 4.138 -0.709 ETKDGv3 24
LY5 H141 5.864 -1.670 0.005 ETKDGv3 25
LY5 H142 5.229 -1.764 -1.680 ETKDGv3 26
LY5 H12 4.355 -0.101 0.664 ETKDGv3 27
LY5 HO3 3.238 0.851 -3.308 ETKDGv3 28
LY5 H161 3.058 -2.496 1.531 ETKDGv3 29
LY5 H162 2.034 -3.170 0.194 ETKDGv3 30
LY5 H111 1.717 -0.742 1.824 ETKDGv3 31
LY5 H112 2.206 0.697 0.899 ETKDGv3 32
LY5 H7 0.510 0.169 -0.867 ETKDGv3 33
LY5 H61 0.112 1.798 1.032 ETKDGv3 34
LY5 H62 -0.651 0.469 1.966 ETKDGv3 35
LY5 H81 -0.058 -2.195 0.993 ETKDGv3 36
LY5 H82 -0.055 -2.097 -0.796 ETKDGv3 37
LY5 H91 -2.240 -1.455 1.217 ETKDGv3 38
LY5 H92 -2.341 -2.311 -0.358 ETKDGv3 39
LY5 H4 -2.009 -0.137 -1.553 ETKDGv3 40
LY5 H5 -1.562 1.880 -0.596 ETKDGv3 41
LY5 H31 -4.369 -0.510 0.368 ETKDGv3 42
LY5 H32 -4.278 -0.718 -1.406 ETKDGv3 43
LY5 HN1 -3.920 1.685 -1.593 ETKDGv3 44
LY5 H1 -4.963 1.935 1.169 ETKDGv3 45
LY5 H21 -3.020 1.058 1.979 ETKDGv3 46
LY5 H22 -2.364 2.681 1.631 ETKDGv3 47
LY5 HO2 -3.206 5.116 -0.973 ETKDGv3 48
#