Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : LU9

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 300


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C12 C C1 N N N 0 4.724 6.699 1.308
2 C11 C C2 N N N 0 4.144 5.365 1.701
3 O12 O O1 N N N 0 5.097 -2.881 3.474
4 O13 O O2 N N N 0 3.179 7.93 2.7
5 O11 O O3 N N N 0 4.707 -2.961 1.3
6 C1 C C3 N N N 0 5.071 -3.532 2.301
7 C2 C C4 R N N 0 5.496 -4.977 2.231
8 C3 C C5 N N N 0 6.958 -5.1 2.665
9 O31 O O4 N N N 0 6.068 1.156 -1.348
10 C31 C C6 N N N 0 6.515 1.465 -0.269
11 C32 C C7 N N N 0 7.999 1.386 -0.017
12 C33 C C8 S N N 0 8.705 0.89 -1.281
13 C34 C C9 N N N 0 10.193 0.691 -0.988
14 C35 C C10 N N N 0 10.875 0.077 -2.213
15 C36 C C11 N N N 0 12.364 -0.122 -1.921
16 C37 C C12 N N N 0 13.046 -0.736 -3.145
17 C38 C C13 N N N 0 14.535 -0.935 -2.853
18 C39 C C14 N N N 0 15.217 -1.548 -4.077
19 CB1 C C15 R N N 0 -0.678 -1.74 0.967
20 CB2 C C16 R N N 0 -2.149 -1.566 0.58
21 NB2 N N1 N N N 0 -2.694 -0.383 1.249
22 CB3 C C17 R N N 0 -2.934 -2.808 1.012
23 OB3 O O5 N N N 0 -4.315 -2.684 0.583
24 C01 C C18 N N N 0 1.169 -7.835 0.01
25 C02 C C19 R N N 0 1.894 -6.518 -0.103
26 C03 C C20 R N N 0 2.689 -4.917 -1.701
27 C04 C C21 N N N 0 3.28 -6.643 0.535
28 C05 C C22 R N N 0 4.033 -5.32 0.363
29 C06 C C23 R N N 0 4.107 -4.977 -1.128
30 C07 C C24 R N N 0 2.757 -4.635 -3.204
31 C08 C C25 N N N 0 1.34 -4.575 -3.776
32 C13 C C26 R N N 0 4.568 7.685 2.467
33 C14 C C27 N N N 0 5.266 9.0 2.116
34 C15 C C28 N N N 0 5.217 9.941 3.322
35 C16 C C29 N N N 0 5.916 11.256 2.97
36 C17 C C30 N N N 0 5.867 12.197 4.176
37 C18 C C31 N N N 0 6.565 13.513 3.825
38 C19 C C32 N N N 0 6.517 14.453 5.03
39 C4 C C33 R N N 0 7.364 -6.577 2.649
40 C5 C C34 R N N 0 6.418 -7.365 3.561
41 C51 C C35 N N N 0 -3.683 0.325 0.668
42 C59 C C43 N N N 0 -10.946 7.141 0.536
43 C52 C C36 N N N 0 -4.167 1.604 1.301
44 C53 C C37 R N N 0 -5.356 2.148 0.507
45 C54 C C38 N N N 0 -5.957 3.346 1.245
46 C55 C C39 N N N 0 -7.219 3.813 0.516
47 C56 C C40 N N N 0 -7.821 5.01 1.255
48 C57 C C41 N N N 0 -9.083 5.477 0.526
49 C58 C C42 N N N 0 -9.684 6.675 1.264
50 C6 C C44 R N N 0 4.976 -7.154 3.092
51 C61 C C45 N N N 0 -5.746 2.352 -1.836
52 C62 C C46 N N N 0 -5.4 2.862 -3.211
53 C63 C C47 N N N 0 -6.572 2.605 -4.16
54 C64 C C48 N N N 0 -6.27 3.228 -5.524
55 C65 C C49 N N N 0 -7.442 2.971 -6.473
56 C69 C C53 N N N 0 -9.182 3.703 -11.1
57 C66 C C50 N N N 0 -7.14 3.594 -7.838
58 C67 C C51 N N N 0 -8.312 3.337 -8.787
59 C68 C C52 N N N 0 -8.009 3.96 -10.151
60 C7 C C54 R N N 0 4.021 -7.89 4.033
61 C71 C C55 N N N 0 -5.245 -3.288 1.339
62 C72 C C56 N N N 0 -6.7 -3.203 0.956
63 C73 C C57 N N N 0 -7.542 -3.971 1.977
64 C8 C C58 N N N 0 2.58 -7.678 3.564
65 C81 C C59 N N N 0 -9.822 -4.515 2.406
66 C82 C C60 N N N 0 -11.294 -4.473 2.086
67 C83 C C61 N N N 0 -12.069 -5.259 3.146
68 C84 C C62 N N N 0 -13.564 -5.216 2.821
69 C85 C C63 N N N 0 -14.338 -6.002 3.881
70 C86 C C64 N N N 0 -15.833 -5.96 3.556
71 C87 C C65 N N N 0 -16.607 -6.746 4.616
72 C88 C C66 N N N 0 -18.102 -6.703 4.291
73 C89 C C67 N N N 0 -18.877 -7.489 5.351
74 CA1 C C68 R N N 0 2.102 3.033 0.936
75 CA2 C C69 R N N 0 3.607 3.039 1.213
76 CA3 C C70 R N N 0 4.273 1.929 0.393
77 CA4 C C71 S N N 0 3.622 0.588 0.745
78 CA5 C C72 R N N 0 2.116 0.678 0.486
79 CA6 C C73 N N N 0 1.449 -0.638 0.892
80 CB4 C C74 S N N 0 -2.305 -4.046 0.366
81 CB5 C C75 R N N 0 -0.828 -4.125 0.761
82 CB6 C C76 N N N 0 -0.178 -5.326 0.071
83 NA2 N N2 N N N 0 4.171 4.336 0.831
84 O01 O O6 N N N 0 3.654 5.217 2.8
85 O02 O O7 N N N 0 1.68 -8.934 -0.565
86 O03 O O8 N N N 0 0.127 -7.9 0.619
87 O04 O O9 N N N 0 2.034 -6.168 -1.481
88 O05 O O10 N N N 0 5.355 -5.45 0.89
89 O06 O O11 N N N 0 4.857 -5.983 -1.812
90 O07 O O12 N N N 0 3.413 -3.385 -3.424
91 O08 O O13 N N N 0 1.405 -4.427 -5.196
92 O33 O O14 N N N 0 8.549 1.854 -2.323
93 O4 O O15 N N N 0 8.706 -6.709 3.124
94 O5 O O16 N N N 0 6.556 -6.904 4.906
95 O51 O O17 N N N 0 -4.182 -0.066 -0.366
96 O53 O O18 N N N 0 -4.907 2.566 -0.81
97 O6 O O19 N N N 0 4.674 -5.757 3.101
98 O61 O O20 N N N 0 -6.779 1.751 -1.656
99 O7 O O21 N N N 0 4.324 -9.286 4.024
100 O71 O O22 N N N 0 -4.915 -3.9 2.328
101 O73 O O23 N N N 0 -8.944 -3.888 1.607
102 O8 O O24 N N N 0 1.681 -8.267 4.506
103 O81 O O25 N N N 0 -9.433 -5.111 3.382
104 OA1 O O26 N N N 0 1.87 3.317 -0.446
105 OA3 O O27 N N N 0 5.69 1.878 0.706
106 OA4 O O28 N N N 0 4.186 -0.444 -0.066
107 OA5 O O29 N N N 0 1.564 1.748 1.255
108 OA6 O O30 N N N 0 0.071 -0.61 0.516
109 OB4 O O31 N N N 0 -2.984 -5.219 0.82
110 OB5 O O32 N N N 0 -0.164 -2.926 0.357
111 OB6 O O33 N N N 0 1.148 -5.504 0.573
112 PA P P1 N N N 0 0.503 3.97 -0.99
113 PB P P2 N N N 0 -3.741 -6.234 -0.174
114 C311 C C82 N N N 0 17.388 -2.361 -5.009
115 C110 C C77 N N N 0 7.215 15.769 4.679
116 C111 C C78 N N N 0 7.166 16.71 5.885
117 C112 C C79 N N N 0 7.864 18.025 5.534
118 C113 C C80 N N N 0 7.816 18.966 6.739
119 C310 C C81 N N N 0 16.706 -1.747 -3.785
120 C312 C C83 N N N 0 18.877 -2.56 -4.717
121 C313 C C84 N N N 0 19.559 -3.174 -5.942
122 C314 C C85 N N N 0 21.048 -3.373 -5.65
123 C510 C C86 N N N 0 -11.547 8.339 1.274
124 C511 C C87 N N N 0 -12.809 8.806 0.546
125 C512 C C88 N N N 0 -13.411 10.004 1.284
126 C513 C C89 N N N 0 -14.673 10.47 0.556
127 C514 C C90 N N N 0 -15.274 11.668 1.294
128 C610 C C91 N N N 0 -8.879 4.326 -12.465
129 C611 C C92 N N N 0 -10.051 4.069 -13.414
130 C612 C C93 N N N 0 -9.749 4.692 -14.778
131 OPA2 O O34 N N N 0 -0.715 3.117 -0.498
132 OPA3 O O35 N N N -1 0.37 5.433 -0.445
133 OPA4 O O36 N N N -1 0.524 3.996 -2.556
134 OPB2 O O37 N N N 0 -4.786 -5.442 -1.033
135 OPB3 O O38 N N N -1 -2.696 -6.915 -1.122
136 OPB4 O O39 N N N -1 -4.48 -7.332 0.664
137 H1 H H1 N N N 0 5.782 6.58 1.072
138 H2 H H2 N N N 0 4.198 7.08 0.433
139 H3 H H3 N N N 0 4.816 -1.956 3.469
140 H4 H H4 N N N 0 2.714 8.306 1.94
141 H5 H H5 N N N 0 7.591 -4.541 1.977
142 H6 H H6 N N N 0 7.074 -4.702 3.673
143 H7 H H7 N N N 0 8.376 2.374 0.245
144 H8 H H8 N N N 0 8.192 0.694 0.803
145 H9 H H9 N N N 0 8.266 -0.058 -1.594
146 H10 H H10 N N N 0 10.651 1.653 -0.762
147 H11 H H11 N N N 0 10.31 0.023 -0.135
148 H12 H H12 N N N 0 10.418 -0.886 -2.439
149 H13 H H13 N N N 0 10.759 0.745 -3.066
150 H14 H H14 N N N 0 12.822 0.841 -1.694
151 H15 H H15 N N N 0 12.481 -0.79 -1.067
152 H16 H H16 N N N 0 12.589 -1.699 -3.372
153 H17 H H17 N N N 0 12.93 -0.068 -3.999
154 H18 H H18 N N N 0 14.993 0.028 -2.626
155 H19 H H19 N N N 0 14.652 -1.602 -1.999
156 H20 H H20 N N N 0 14.76 -2.511 -4.304
157 H21 H H21 N N N 0 15.101 -0.881 -4.931
158 H22 H H22 N N N 0 -0.595 -1.823 2.05
159 H23 H H23 N N N 0 -2.229 -1.442 -0.501
160 H24 H H24 N N N 0 -2.344 -0.109 2.112
161 H25 H H25 N N N 0 -2.895 -2.904 2.097
162 H26 H H26 N N N 0 2.131 -4.122 -1.207
163 H27 H H27 N N N 0 3.174 -6.866 1.596
164 H28 H H28 N N N 0 3.835 -7.444 0.046
165 H29 H H29 N N N 0 3.504 -4.528 0.893
166 H30 H H30 N N N 0 4.593 -4.01 -1.256
167 H31 H H31 N N N 0 3.315 -5.43 -3.698
168 H32 H H32 N N N 0 0.809 -5.495 -3.53
169 H33 H H33 N N N 0 0.81 -3.724 -3.346
170 H34 H H34 N N N 0 5.018 7.263 3.366
171 H35 H H35 N N N 0 6.305 8.801 1.852
172 H36 H H36 N N N 0 4.759 9.466 1.271
173 H37 H H37 N N N 0 4.179 10.14 3.586
174 H38 H H38 N N N 0 5.724 9.475 4.167
175 H42 H H42 N N N 0 6.374 11.731 5.021
176 H39 H H39 N N N 0 6.954 11.057 2.707
177 H40 H H40 N N N 0 5.409 11.722 2.125
178 H41 H H41 N N N 0 4.828 12.396 4.44
179 H44 H H44 N N N 0 6.058 13.979 2.98
180 H43 H H43 N N N 0 7.604 13.314 3.561
181 H45 H H45 N N N 0 5.478 14.653 5.294
182 H46 H H46 N N N 0 7.023 13.987 5.876
183 H47 H H47 N N N 0 7.298 -6.963 1.632
184 H48 H H48 N N N 0 6.665 -8.426 3.513
185 H49 H H49 N N N 0 -4.476 1.406 2.328
186 H50 H H50 N N N 0 -3.362 2.338 1.299
187 H51 H H51 N N N 0 -6.111 1.369 0.403
188 H52 H H52 N N N 0 -6.213 3.054 2.263
189 H53 H H53 N N N 0 -5.231 4.159 1.271
190 H54 H H54 N N N 0 -6.964 4.104 -0.502
191 H55 H H55 N N N 0 -7.945 3.0 0.491
192 H56 H H56 N N N 0 -8.076 4.719 2.273
193 H57 H H57 N N N 0 -7.095 5.823 1.281
194 H58 H H58 N N N 0 -8.827 5.769 -0.492
195 H59 H H59 N N N 0 -9.809 4.665 0.5
196 H60 H H60 N N N 0 -9.939 6.383 2.283
197 H64 H H64 N N N 0 4.862 -7.544 2.08
198 H61 H H61 N N N 0 -8.958 7.488 1.29
199 H62 H H62 N N N 0 -10.691 7.433 -0.483
200 H63 H H63 N N N 0 -11.672 6.329 0.51
201 H65 H H65 N N N 0 -5.201 3.933 -3.161
202 H66 H H66 N N N 0 -4.515 2.344 -3.578
203 H67 H H67 N N N 0 -6.718 1.531 -4.275
204 H68 H H68 N N N 0 -7.478 3.053 -3.749
205 H69 H H69 N N N 0 -6.125 4.303 -5.409
206 H70 H H70 N N N 0 -5.365 2.781 -5.935
207 H71 H H71 N N N 0 -7.587 1.897 -6.589
208 H72 H H72 N N N 0 -8.347 3.418 -6.062
209 H73 H H73 N N N 0 -6.994 4.668 -7.722
210 H74 H H74 N N N 0 -6.234 3.147 -8.249
211 H75 H H75 N N N 0 -8.457 2.263 -8.902
212 H76 H H76 N N N 0 -9.217 3.784 -8.376
213 H77 H H77 N N N 0 -7.864 5.035 -10.036
214 H78 H H78 N N N 0 -7.104 3.513 -10.562
215 H79 H H79 N N N 0 -9.327 2.629 -11.215
216 H80 H H80 N N N 0 -10.087 4.15 -10.689
217 H81 H H81 N N N 0 4.134 -7.499 5.044
218 H83 H H83 N N N 0 -7.011 -2.158 0.94
219 H84 H H84 N N N 0 -6.841 -3.639 -0.033
220 H85 H H85 N N N 0 -7.231 -5.015 1.992
221 H86 H H86 N N N 0 -7.401 -3.535 2.966
222 H87 H H87 N N N 0 2.376 -6.61 3.485
223 H88 H H88 N N N 0 2.442 -8.147 2.589
224 H90 H H90 N N N 0 -11.636 -3.438 2.08
225 H91 H H91 N N N 0 -11.466 -4.918 1.106
226 H92 H H92 N N N 0 -11.728 -6.294 3.153
227 H93 H H93 N N N 0 -11.898 -4.813 4.126
228 H94 H H94 N N N 0 -13.905 -4.181 2.815
229 H95 H H95 N N N 0 -13.735 -5.662 1.841
230 H96 H H96 N N N 0 -13.997 -7.037 3.888
231 H97 H H97 N N N 0 -14.167 -5.557 4.861
232 H98 H H98 N N N 0 -16.174 -4.925 3.55
233 H99 H H99 N N N 0 -16.004 -6.405 2.576
234 H105 H H105 N N N 0 -18.535 -8.524 5.358
235 H100 H H100 N N N 0 -16.266 -7.781 4.623
236 H101 H H101 N N N 0 -16.436 -6.3 5.596
237 H102 H H102 N N N 0 -18.443 -5.668 4.285
238 H103 H H103 N N N 0 -18.274 -7.149 3.311
239 H104 H H104 N N N 0 -19.941 -7.459 5.12
240 H106 H H106 N N N 0 -18.705 -7.044 6.331
241 H107 H H107 N N N 0 1.616 3.793 1.549
242 H108 H H108 N N N 0 3.783 2.863 2.274
243 H109 H H109 N N N 0 4.14 2.132 -0.669
244 H110 H H110 N N N 0 3.799 0.363 1.797
245 H111 H H111 N N N 0 1.94 0.863 -0.573
246 H112 H H112 N N N 0 1.946 -1.467 0.388
247 H113 H H113 N N N 0 1.529 -0.768 1.971
248 H114 H H114 N N N 0 -2.388 -3.973 -0.719
249 H115 H H115 N N N 0 -0.747 -4.239 1.842
250 H116 H H116 N N N 0 -0.766 -6.222 0.271
251 H117 H H117 N N N 0 -0.139 -5.15 -1.004
252 H118 H H118 N N N 0 4.563 4.454 -0.049
253 H119 H H119 N N N 0 1.18 -9.755 -0.466
254 H121 H H121 N N N 0 4.94 -5.833 -2.764
255 H122 H H122 N N N 0 2.971 -2.63 -3.011
256 H123 H H123 N N N 0 0.541 -4.382 -5.627
257 H124 H H124 N N N 0 8.917 2.723 -2.114
258 H125 H H125 N N N 0 9.358 -6.229 2.597
259 H126 H H126 N N N 0 7.448 -7.003 5.266
260 H127 H H127 N N N 0 4.244 -9.701 3.155
261 H82 H H82 N N N 0 3.85 -1.329 0.133
262 H89 H H89 N N N 0 0.747 -8.17 4.272
263 H161 H H161 N N N 0 -8.734 5.4 -12.349
264 H160 H H160 N N N 0 -7.974 3.879 -12.875
265 H163 H H163 N N N 0 -10.196 2.995 -13.529
266 H162 H H162 N N N 0 -10.956 4.516 -13.003
267 H164 H H164 N N N 0 -10.584 4.509 -15.454
268 H166 H H166 N N N 0 -9.604 5.766 -14.663
269 H165 H H165 N N N 0 -8.844 4.245 -15.189
270 H149 H H149 N N N 0 -11.802 8.047 2.293
271 H152 H H152 N N N 0 -12.554 9.098 -0.473
272 H151 H H151 N N N 0 -13.535 7.993 0.52
273 H150 H H150 N N N 0 -10.821 9.152 1.3
274 H154 H H154 N N N 0 -13.666 9.712 2.303
275 H153 H H153 N N N 0 -12.685 10.816 1.31
276 H155 H H155 N N N 0 -14.417 10.762 -0.463
277 H156 H H156 N N N 0 -15.399 9.658 0.53
278 H157 H H157 N N N 0 -15.529 11.376 2.313
279 H158 H H158 N N N 0 -14.548 12.481 1.32
280 H159 H H159 N N N 0 -16.173 12.001 0.775
281 H140 H H140 N N N 0 8.253 15.57 4.415
282 H141 H H141 N N N 0 6.708 16.235 3.834
283 H142 H H142 N N N 0 6.128 16.909 6.149
284 H143 H H143 N N N 0 7.673 16.244 6.73
285 H144 H H144 N N N 0 8.903 17.826 5.27
286 H145 H H145 N N N 0 7.358 18.491 4.689
287 H146 H H146 N N N 0 8.323 18.5 7.584
288 H147 H H147 N N N 0 8.313 19.903 6.489
289 H148 H H148 N N N 0 6.777 19.165 7.003
290 H130 H H130 N N N 0 17.164 -0.785 -3.559
291 H129 H H129 N N N 0 16.823 -2.415 -2.931
292 H131 H H131 N N N 0 16.931 -3.324 -5.236
293 H132 H H132 N N N 0 17.272 -1.693 -5.863
294 H134 H H134 N N N 0 19.335 -1.597 -4.491
295 H133 H H133 N N N 0 18.994 -3.228 -3.864
296 H136 H H136 N N N 0 19.101 -4.136 -6.168
297 H135 H H135 N N N 0 19.443 -2.506 -6.795
298 H138 H H138 N N N 0 21.506 -2.41 -5.423
299 H139 H H139 N N N 0 21.164 -4.04 -4.796
300 H137 H H137 N N N 0 21.534 -3.81 -6.522