Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : LSB

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 79


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N Y N 0 -6.498 -0.181 -0.811
2 C2 C C2 N Y N 0 -7.853 0.011 -0.611
3 C3 C C3 N Y N 0 -8.752 -0.974 -0.975
4 C4 C C4 N Y N 0 -8.296 -2.15 -1.54
5 C5 C C5 N Y N 0 -6.942 -2.342 -1.741
6 C6 C C6 N Y N 0 -6.043 -1.358 -1.375
7 C7 C C7 N N N 0 -5.407 -0.757 1.485
8 C8 C C8 R N N 0 -4.868 0.566 0.937
9 C9 C C9 S N N 0 -5.519 0.896 -0.42
10 O10 O O10 N N N 0 -4.398 0.928 -1.35
11 C11 C C11 N N N 0 -3.264 0.668 -0.691
12 N12 N N12 N N N 0 -3.436 0.448 0.62
13 C13 C C13 N N N 0 -2.458 0.166 1.503
14 C14 C C14 R N N 0 -1.05 -0.068 1.018
15 C15 C C15 S N N 0 -0.284 1.256 1.018
16 C16 C C16 S N N 0 1.104 1.043 0.41
17 C17 C C17 N N N 0 1.87 2.367 0.41
18 C18 C C18 R N N 0 3.292 2.133 -0.104
19 C19 C C19 R N N 0 4.135 1.064 0.594
20 C20 C C20 N N N 0 5.127 0.27 -0.259
21 C21 C C21 N N N 0 5.773 -0.822 0.596
22 C22 C C22 R N N 0 6.849 -1.54 -0.222
23 C23 C C23 R N N 0 8.006 -0.702 -0.768
24 C24 C C24 N N N 0 9.383 -1.363 -0.864
25 O25 O O25 N N N 0 -2.176 0.633 -1.231
26 O26 O O26 N N N 0 -2.711 0.101 2.687
27 C27 C C27 N N N 0 -0.35 -1.062 1.947
28 C28 C C28 N N N 0 -1.053 -2.419 1.864
29 O29 O O29 N N N 0 -0.149 1.728 2.36
30 C30 C C30 N N N 0 0.958 0.537 -1.027
31 C31 C C31 N N N 0 3.496 2.334 -1.607
32 C32 C C32 N N N 0 3.096 3.76 -1.99
33 O33 O O33 N N N 0 4.377 2.462 0.766
34 C34 C C34 N N N 0 7.147 -2.982 0.193
35 C35 C C35 N N N 0 5.871 -3.819 0.081
36 O36 O O36 N N N 0 6.965 -1.207 -1.607
37 H2 H H2 N N N 0 -8.208 0.931 -0.17
38 H3 H H3 N N N 0 -9.81 -0.824 -0.818
39 H4 H H4 N N N 0 -8.999 -2.92 -1.824
40 H5 H H5 N N N 0 -6.587 -3.262 -2.181
41 H6 H H6 N N N 0 -4.985 -1.508 -1.531
42 H7 H H7 N N N 0 -5.184 -1.559 0.782
43 H7A H H7A N N N 0 -4.936 -0.972 2.444
44 H7B H H7B N N N 0 -6.486 -0.681 1.62
45 H8 H H8 N N N 0 -5.039 1.373 1.65
46 H9 H H9 N N N 0 -6.014 1.866 -0.381
47 H14 H H14 N N N 0 -1.077 -0.473 0.007
48 H15 H H15 N N N 0 -0.83 1.992 0.428
49 H16 H H16 N N N 0 1.65 0.307 1.001
50 H17 H H17 N N N 0 1.362 3.08 -0.239
51 H17A H H17A N N N 0 1.911 2.763 1.424
52 H19 H H19 N N N 0 3.682 0.521 1.422
53 H20 H H20 N N N 0 4.6 -0.188 -1.096
54 H20A H H20A N N N 0 5.899 0.939 -0.637
55 H21 H H21 N N N 0 6.227 -0.372 1.478
56 H21A H H21A N N N 0 5.013 -1.54 0.905
57 H23 H H23 N N N 0 8.009 0.366 -0.548
58 H24 H H24 N N N 0 9.324 -2.231 -1.521
59 H24A H H24A N N N 0 10.101 -0.65 -1.268
60 H24B H H24B N N N 0 9.703 -1.68 0.129
61 H27 H H27 N N N 0 0.691 -1.173 1.643
62 H27A H H27A N N N 0 -0.392 -0.693 2.972
63 H28 H H28 N N N 0 -2.112 -2.294 2.087
64 H28A H H28A N N N 0 -0.938 -2.827 0.86
65 H28B H H28B N N N 0 -0.608 -3.103 2.588
66 HO29 H HO29 N N N 0 0.329 1.123 2.944
67 H30 H H30 N N N 0 1.943 0.299 -1.429
68 H30A H H30A N N N 0 0.336 -0.358 -1.036
69 H30B H H30B N N N 0 0.493 1.31 -1.639
70 H31 H H31 N N N 0 4.544 2.171 -1.856
71 H31A H H31A N N N 0 2.878 1.623 -2.156
72 H32 H H32 N N N 0 3.342 3.937 -3.037
73 H32A H H32A N N N 0 2.024 3.889 -1.841
74 H35 H H35 N N N 0 6.074 -4.837 0.413
75 H32B H H32B N N N 0 3.638 4.47 -1.365
76 H34 H H34 N N N 0 7.913 -3.398 -0.461
77 H34A H H34A N N N 0 7.502 -2.998 1.224
78 H35A H H35A N N N 0 5.093 -3.381 0.706
79 H35B H H35B N N N 0 5.537 -3.835 -0.957