data_LSB
#
_chem_comp.id LSB
_chem_comp.name
(4R,5S)-3-((2R,3S,4S)-2-ethyl-5-((2R,3R)-2-ethyl-3-(2-((2R,3R)-2-ethyl-3-methyloxiran-2-yl)ethyl)oxiran-2-yl)-3-hydroxy-4-methylpentanoyl)-4-methyl-5-phenyloxazolidin-2-one
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C29 H43 N O6"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms
(4R,5S)-3-[(2R,3S,4S)-2-ethyl-5-[(3R)-2-ethyl-3-[2-[(2R,3R)-2-ethyl-3-methyl-oxiran-2-yl]ethyl]oxiran-2-yl]-3-hydroxy-4-methyl-pentanoyl]-4-methyl-5-phenyl-1,3-oxazolidin-2-one
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2011-04-13
_chem_comp.pdbx_modified_date 2024-02-19
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 501.655
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code LSB
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3RGA
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LSB C1 C1 C 0 1 Y N N N N N 60.120 54.674 10.302 -6.498 -0.181 -0.811 C1 LSB 1
LSB C2 C2 C 0 1 Y N N N N N 60.079 56.048 10.582 -7.853 0.011 -0.611 C2 LSB 2
LSB C3 C3 C 0 1 Y N N N N N 60.606 56.584 11.762 -8.752 -0.974 -0.975 C3 LSB 3
LSB C4 C4 C 0 1 Y N N N N N 61.213 55.735 12.663 -8.296 -2.150 -1.540 C4 LSB 4
LSB C5 C5 C 0 1 Y N N N N N 61.275 54.370 12.398 -6.942 -2.342 -1.741 C5 LSB 5
LSB C6 C6 C 0 1 Y N N N N N 60.739 53.834 11.225 -6.043 -1.358 -1.375 C6 LSB 6
LSB C7 C7 C 0 1 N N N N N N 58.164 51.850 9.477 -5.407 -0.757 1.485 C7 LSB 7
LSB C8 C8 C 0 1 N N R N N N 58.233 53.292 8.915 -4.868 0.566 0.937 C8 LSB 8
LSB C9 C9 C 0 1 N N S N N N 59.555 54.141 9.012 -5.519 0.896 -0.420 C9 LSB 9
LSB O10 O10 O 0 1 N N N N N N 59.163 55.346 8.359 -4.398 0.928 -1.350 O10 LSB 10
LSB C11 C11 C 0 1 N N N N N N 57.713 55.408 8.659 -3.264 0.668 -0.691 C11 LSB 11
LSB N12 N12 N 0 1 N N N N N N 57.307 54.352 9.387 -3.436 0.448 0.620 N12 LSB 12
LSB C13 C13 C 0 1 N N N N N N 56.072 54.306 9.948 -2.458 0.166 1.503 C13 LSB 13
LSB C14 C14 C 0 1 N N R N N N 55.442 52.939 10.143 -1.050 -0.068 1.018 C14 LSB 14
LSB C15 C15 C 0 1 N N S N N N 55.055 52.571 11.562 -0.284 1.256 1.018 C15 LSB 15
LSB C16 C16 C 0 1 N N S N N N 56.019 52.566 12.756 1.104 1.043 0.410 C16 LSB 16
LSB C17 C17 C 0 1 N N N N N N 55.173 52.206 13.997 1.870 2.367 0.410 C17 LSB 17
LSB C18 C18 C 0 1 N N R N N N 54.399 50.870 13.935 3.292 2.133 -0.104 C18 LSB 18
LSB C19 C19 C 0 1 N N R N N N 52.878 50.947 13.764 4.135 1.064 0.594 C19 LSB 19
LSB C20 C20 C 0 1 N N N N N N 51.968 49.775 13.380 5.127 0.270 -0.259 C20 LSB 20
LSB C21 C21 C 0 1 N N N N N N 50.507 50.239 13.595 5.773 -0.822 0.596 C21 LSB 21
LSB C22 C22 C 0 1 N N R N N N 49.428 49.160 13.585 6.849 -1.540 -0.222 C22 LSB 22
LSB C23 C23 C 0 1 N N R N N N 49.727 47.731 14.022 8.006 -0.702 -0.768 C23 LSB 23
LSB C24 C24 C 0 1 N N N N N N 48.583 46.885 14.497 9.383 -1.363 -0.864 C24 LSB 24
LSB O25 O25 O 0 1 N N N N N N 57.093 56.466 8.579 -2.176 0.633 -1.231 O25 LSB 25
LSB O26 O26 O 0 1 N N N N N N 55.511 55.323 10.365 -2.711 0.101 2.687 O26 LSB 26
LSB C27 C27 C 0 1 N N N N N N 54.223 52.590 9.251 -0.350 -1.062 1.947 C27 LSB 27
LSB C28 C28 C 0 1 N N N N N N 53.630 53.695 8.428 -1.053 -2.419 1.864 C28 LSB 28
LSB O29 O29 O 0 1 N N N N N N 54.784 51.187 11.343 -0.149 1.728 2.360 O29 LSB 29
LSB C30 C30 C 0 1 N N N N N N 56.789 53.879 12.917 0.958 0.537 -1.027 C30 LSB 30
LSB C31 C31 C 0 1 N N N N N N 55.123 49.532 13.789 3.496 2.334 -1.607 C31 LSB 31
LSB C32 C32 C 0 1 N N N N N N 56.358 49.494 14.671 3.096 3.760 -1.990 C32 LSB 32
LSB O33 O33 O 0 1 N N N N N N 53.489 50.809 15.072 4.377 2.462 0.766 O33 LSB 33
LSB C34 C34 C 0 1 N N N N N N 47.953 49.592 13.599 7.147 -2.982 0.193 C34 LSB 34
LSB C35 C35 C 0 1 N N N N N N 47.566 50.166 14.958 5.871 -3.819 0.081 C35 LSB 35
LSB O36 O36 O 0 1 N N N N N N 49.696 48.109 12.635 6.965 -1.207 -1.607 O36 LSB 36
LSB H2 H2 H 0 1 N N N N N N 59.626 56.714 9.863 -8.208 0.931 -0.170 H2 LSB 37
LSB H3 H3 H 0 1 N N N N N N 60.539 57.643 11.963 -9.810 -0.824 -0.818 H3 LSB 38
LSB H4 H4 H 0 1 N N N N N N 61.640 56.129 13.574 -8.999 -2.920 -1.824 H4 LSB 39
LSB H5 H5 H 0 1 N N N N N N 61.747 53.713 13.113 -6.587 -3.262 -2.181 H5 LSB 40
LSB H6 H6 H 0 1 N N N N N N 60.804 52.773 11.034 -4.985 -1.508 -1.531 H6 LSB 41
LSB H7 H7 H 0 1 N N N N N N 57.158 51.438 9.308 -5.184 -1.559 0.782 H7 LSB 42
LSB H7A H7A H 0 1 N N N N N N 58.908 51.221 8.966 -4.936 -0.972 2.444 H7A LSB 43
LSB H7B H7B H 0 1 N N N N N N 58.377 51.867 10.556 -6.486 -0.681 1.620 H7B LSB 44
LSB H8 H8 H 0 1 N N N N N N 58.005 52.863 7.928 -5.039 1.373 1.650 H8 LSB 45
LSB H9 H9 H 0 1 N N N N N N 60.332 53.448 8.658 -6.014 1.866 -0.381 H9 LSB 46
LSB H14 H14 H 0 1 N N N N N N 56.308 52.341 9.822 -1.077 -0.473 0.007 H14 LSB 47
LSB H15 H15 H 0 1 N N N N N N 54.331 53.333 11.887 -0.830 1.992 0.428 H15 LSB 48
LSB H16 H16 H 0 1 N N N N N N 56.815 51.823 12.601 1.650 0.307 1.001 H16 LSB 49
LSB H17 H17 H 0 1 N N N N N N 55.860 52.145 14.854 1.362 3.080 -0.239 H17 LSB 50
LSB H17A H17A H 0 0 N N N N N N 54.431 53.007 14.129 1.911 2.763 1.424 H17A LSB 51
LSB H19 H19 H 0 1 N N N N N N 52.253 51.641 13.182 3.682 0.521 1.422 H19 LSB 52
LSB H20 H20 H 0 1 N N N N N N 52.128 49.498 12.327 4.600 -0.188 -1.096 H20 LSB 53
LSB H20A H20A H 0 0 N N N N N N 52.186 48.901 14.012 5.899 0.939 -0.637 H20A LSB 54
LSB H21 H21 H 0 1 N N N N N N 50.466 50.727 14.580 6.227 -0.372 1.478 H21 LSB 55
LSB H21A H21A H 0 0 N N N N N N 50.269 50.940 12.782 5.013 -1.540 0.905 H21A LSB 56
LSB H23 H23 H 0 1 N N N N N N 50.448 47.263 14.709 8.009 0.366 -0.548 H23 LSB 57
LSB H24 H24 H 0 1 N N N N N N 48.955 45.888 14.775 9.324 -2.231 -1.521 H24 LSB 58
LSB H24A H24A H 0 0 N N N N N N 48.115 47.359 15.372 10.101 -0.650 -1.268 H24A LSB 59
LSB H24B H24B H 0 0 N N N N N N 47.840 46.788 13.692 9.703 -1.680 0.129 H24B LSB 60
LSB H27 H27 H 0 1 N N N N N N 54.553 51.810 8.549 0.691 -1.173 1.643 H27 LSB 61
LSB H27A H27A H 0 0 N N N N N N 53.429 52.229 9.921 -0.392 -0.693 2.972 H27A LSB 62
LSB H28 H28 H 0 1 N N N N N N 52.779 53.306 7.850 -2.112 -2.294 2.087 H28 LSB 63
LSB H28A H28A H 0 0 N N N N N N 53.284 54.501 9.092 -0.938 -2.827 0.860 H28A LSB 64
LSB H28B H28B H 0 0 N N N N N N 54.392 54.088 7.739 -0.608 -3.103 2.588 H28B LSB 65
LSB HO29 HO29 H 0 0 N N N N N N 54.517 50.783 12.160 0.329 1.123 2.944 HO29 LSB 66
LSB H30 H30 H 0 1 N N N N N N 57.458 53.808 13.787 1.943 0.299 -1.429 H30 LSB 67
LSB H30A H30A H 0 0 N N N N N N 57.384 54.068 12.011 0.336 -0.358 -1.036 H30A LSB 68
LSB H30B H30B H 0 0 N N N N N N 56.078 54.705 13.068 0.493 1.310 -1.639 H30B LSB 69
LSB H31 H31 H 0 1 N N N N N N 54.443 48.720 14.087 4.544 2.171 -1.856 H31 LSB 70
LSB H31A H31A H 0 0 N N N N N N 55.426 49.399 12.740 2.878 1.623 -2.156 H31A LSB 71
LSB H32 H32 H 0 1 N N N N N N 56.864 48.525 14.552 3.342 3.937 -3.037 H32 LSB 72
LSB H32A H32A H 0 0 N N N N N N 57.043 50.304 14.378 2.024 3.889 -1.841 H32A LSB 73
LSB H32B H32B H 0 0 N N N N N N 56.062 49.626 15.722 3.638 4.470 -1.365 H32B LSB 74
LSB H34 H34 H 0 1 N N N N N N 47.798 50.361 12.828 7.913 -3.398 -0.461 H34 LSB 75
LSB H34A H34A H 0 0 N N N N N N 47.322 48.716 13.387 7.502 -2.998 1.224 H34A LSB 76
LSB H35 H35 H 0 1 N N N N N N 46.508 50.467 14.942 6.074 -4.837 0.413 H35 LSB 77
LSB H35A H35A H 0 0 N N N N N N 47.718 49.402 15.735 5.093 -3.381 0.706 H35A LSB 78
LSB H35B H35B H 0 0 N N N N N N 48.193 51.043 15.178 5.537 -3.835 -0.957 H35B LSB 79
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LSB C1 C2 DOUB Y N 1
LSB C1 C6 SING Y N 2
LSB C1 C9 SING N N 3
LSB C2 C3 SING Y N 4
LSB C3 C4 DOUB Y N 5
LSB C4 C5 SING Y N 6
LSB C5 C6 DOUB Y N 7
LSB C7 C8 SING N N 8
LSB C8 C9 SING N N 9
LSB C8 N12 SING N N 10
LSB C9 O10 SING N N 11
LSB O10 C11 SING N N 12
LSB C11 N12 SING N N 13
LSB C11 O25 DOUB N N 14
LSB N12 C13 SING N N 15
LSB C13 C14 SING N N 16
LSB C13 O26 DOUB N N 17
LSB C14 C15 SING N N 18
LSB C14 C27 SING N N 19
LSB C15 C16 SING N N 20
LSB C15 O29 SING N N 21
LSB C16 C17 SING N N 22
LSB C16 C30 SING N N 23
LSB C17 C18 SING N N 24
LSB C18 C19 SING N N 25
LSB C18 C31 SING N N 26
LSB C18 O33 SING N N 27
LSB C19 C20 SING N N 28
LSB C19 O33 SING N N 29
LSB C20 C21 SING N N 30
LSB C21 C22 SING N N 31
LSB C22 C23 SING N N 32
LSB C22 C34 SING N N 33
LSB C22 O36 SING N N 34
LSB C23 C24 SING N N 35
LSB C23 O36 SING N N 36
LSB C27 C28 SING N N 37
LSB C31 C32 SING N N 38
LSB C34 C35 SING N N 39
LSB C2 H2 SING N N 40
LSB C3 H3 SING N N 41
LSB C4 H4 SING N N 42
LSB C5 H5 SING N N 43
LSB C6 H6 SING N N 44
LSB C7 H7 SING N N 45
LSB C7 H7A SING N N 46
LSB C7 H7B SING N N 47
LSB C8 H8 SING N N 48
LSB C9 H9 SING N N 49
LSB C14 H14 SING N N 50
LSB C15 H15 SING N N 51
LSB C16 H16 SING N N 52
LSB C17 H17 SING N N 53
LSB C17 H17A SING N N 54
LSB C19 H19 SING N N 55
LSB C20 H20 SING N N 56
LSB C20 H20A SING N N 57
LSB C21 H21 SING N N 58
LSB C21 H21A SING N N 59
LSB C23 H23 SING N N 60
LSB C24 H24 SING N N 61
LSB C24 H24A SING N N 62
LSB C24 H24B SING N N 63
LSB C27 H27 SING N N 64
LSB C27 H27A SING N N 65
LSB C28 H28 SING N N 66
LSB C28 H28A SING N N 67
LSB C28 H28B SING N N 68
LSB O29 HO29 SING N N 69
LSB C30 H30 SING N N 70
LSB C30 H30A SING N N 71
LSB C30 H30B SING N N 72
LSB C31 H31 SING N N 73
LSB C31 H31A SING N N 74
LSB C32 H32 SING N N 75
LSB C32 H32A SING N N 76
LSB C32 H32B SING N N 77
LSB C34 H34 SING N N 78
LSB C34 H34A SING N N 79
LSB C35 H35 SING N N 80
LSB C35 H35A SING N N 81
LSB C35 H35B SING N N 82
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LSB SMILES ACDLabs 12.01 O=C2OC(c1ccccc1)C(N2C(=O)C(CC)C(O)C(C)CC4(OC4CCC3(OC3C)CC)CC)C
LSB SMILES_CANONICAL CACTVS 3.370 CC[C@H]([C@@H](O)[C@@H](C)C[C@@]1(CC)O[C@@H]1CC[C@@]2(CC)O[C@@H]2C)C(=O)N3[C@H](C)[C@@H](OC3=O)c4ccccc4
LSB SMILES CACTVS 3.370 CC[CH]([CH](O)[CH](C)C[C]1(CC)O[CH]1CC[C]2(CC)O[CH]2C)C(=O)N3[CH](C)[CH](OC3=O)c4ccccc4
LSB SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 CC[C@H]([C@H]([C@@H](C)CC1([C@H](O1)CC[C@@]2([C@H](O2)C)CC)CC)O)C(=O)N3[C@@H]([C@@H](OC3=O)c4ccccc4)C
LSB SMILES "OpenEye OEToolkits" 1.7.0 CCC(C(C(C)CC1(C(O1)CCC2(C(O2)C)CC)CC)O)C(=O)N3C(C(OC3=O)c4ccccc4)C
LSB InChI InChI 1.03 InChI=1S/C29H43NO6/c1-7-22(26(32)30-19(5)25(34-27(30)33)21-13-11-10-12-14-21)24(31)18(4)17-29(9-3)23(36-29)15-16-28(8-2)20(6)35-28/h10-14,18-20,22-25,31H,7-9,15-17H2,1-6H3/t18-,19+,20+,22+,23+,24-,25+,28+,29+/m0/s1
LSB InChIKey InChI 1.03 PLMSSXURLNIBST-CWZDORBJSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
LSB "SYSTEMATIC NAME" ACDLabs 12.01 "(4R,5S)-3-{(2R,3S,4S)-2-ethyl-5-[(2R,3R)-2-ethyl-3-{2-[(2R,3R)-2-ethyl-3-methyloxiran-2-yl]ethyl}oxiran-2-yl]-3-hydroxy-4-methylpentanoyl}-4-methyl-5-phenyl-1,3-oxazolidin-2-one (non-preferred name)"
LSB "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 (4R,5S)-3-[(2R,3S,4S)-2-ethyl-5-[(3R)-2-ethyl-3-[2-[(2R,3R)-2-ethyl-3-methyl-oxiran-2-yl]ethyl]oxiran-2-yl]-3-hydroxy-4-methyl-pentanoyl]-4-methyl-5-phenyl-1,3-oxazolidin-2-one
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LSB 'Create component' 2011-04-13 PDBJ
LSB 'Modify aromatic_flag' 2011-06-04 RCSB
LSB 'Modify descriptor' 2011-06-04 RCSB
LSB 'Modify name' 2024-01-18 PDBJ
LSB 'Modify name' 2024-02-19 PDBJ
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id LSB
_pdbx_chem_comp_synonyms.name
(4R,5S)-3-[(2R,3S,4S)-2-ethyl-5-[(3R)-2-ethyl-3-[2-[(2R,3R)-2-ethyl-3-methyl-oxiran-2-yl]ethyl]oxiran-2-yl]-3-hydroxy-4-methyl-pentanoyl]-4-methyl-5-phenyl-1,3-oxazolidin-2-one
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id LSB
_pdbe_chem_comp_synonyms.name
'(4R,5S)-3-[(2R,3S,4S)-2-ethyl-5-[(3R)-2-ethyl-3-[2-[(2R,3R)-2-ethyl-3-methyl-oxiran-2-yl]ethyl]oxiran-2-yl]-3-hydroxy-4-methyl-pentanoyl]-4-methyl-5-phenyl-1,3-oxazolidin-2-one'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
LSB C1 C 6.942 -6.933 1
LSB C2 C 8.241 -7.683 2
LSB C3 C 8.241 -9.183 3
LSB C4 C 6.942 -9.933 4
LSB C5 C 5.643 -9.183 5
LSB C6 C 5.643 -7.683 6
LSB C7 C 4.302 -5.015 7
LSB C8 C 5.728 -4.551 8
LSB C9 C 6.942 -5.433 9
LSB O10 O 8.155 -4.551 10
LSB C11 C 7.692 -3.125 11
LSB N12 N 6.192 -3.125 12
LSB C13 C 5.310 -1.911 13
LSB C14 C 5.920 -0.541 14
LSB C15 C 5.038 0.673 15
LSB C16 C 5.649 2.043 16
LSB C17 C 4.767 3.256 17
LSB C18 C 5.377 4.627 18
LSB C19 C 6.591 5.508 19
LSB C20 C 7.201 6.879 20
LSB C21 C 8.692 7.036 21
LSB C22 C 9.303 8.406 22
LSB C23 C 7.932 9.016 23
LSB C24 C 6.440 8.859 24
LSB O25 O 8.573 -1.911 25
LSB O26 O 3.818 -2.068 26
LSB C27 C 7.412 -0.384 27
LSB C28 C 8.022 0.986 28
LSB O29 O 3.547 0.516 29
LSB C30 C 7.140 2.200 30
LSB C31 C 4.495 5.840 31
LSB C32 C 3.003 5.684 32
LSB O33 O 6.747 4.017 33
LSB C34 C 10.794 8.563 34
LSB C35 C 11.404 9.933 35
LSB O36 O 9.146 9.898 36
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
LSB C1 C2 DOUBLE NONE 1
LSB C1 C6 SINGLE NONE 2
LSB C9 C1 SINGLE BEGINWEDGE 3
LSB C2 C3 SINGLE NONE 4
LSB C3 C4 DOUBLE NONE 5
LSB C4 C5 SINGLE NONE 6
LSB C5 C6 DOUBLE NONE 7
LSB C8 C7 SINGLE BEGINWEDGE 8
LSB C8 C9 SINGLE NONE 9
LSB C8 N12 SINGLE NONE 10
LSB C9 O10 SINGLE NONE 11
LSB O10 C11 SINGLE NONE 12
LSB C11 N12 SINGLE NONE 13
LSB C11 O25 DOUBLE NONE 14
LSB N12 C13 SINGLE NONE 15
LSB C13 C14 SINGLE NONE 16
LSB C13 O26 DOUBLE NONE 17
LSB C14 C15 SINGLE NONE 18
LSB C14 C27 SINGLE BEGINWEDGE 19
LSB C15 C16 SINGLE NONE 20
LSB C15 O29 SINGLE BEGINWEDGE 21
LSB C16 C17 SINGLE NONE 22
LSB C16 C30 SINGLE BEGINDASH 23
LSB C18 C17 SINGLE BEGINDASH 24
LSB C18 C19 SINGLE NONE 25
LSB C18 C31 SINGLE NONE 26
LSB C18 O33 SINGLE NONE 27
LSB C19 C20 SINGLE BEGINWEDGE 28
LSB C19 O33 SINGLE NONE 29
LSB C20 C21 SINGLE NONE 30
LSB C22 C21 SINGLE BEGINDASH 31
LSB C22 C23 SINGLE NONE 32
LSB C22 C34 SINGLE NONE 33
LSB C22 O36 SINGLE NONE 34
LSB C23 C24 SINGLE BEGINWEDGE 35
LSB C23 O36 SINGLE NONE 36
LSB C27 C28 SINGLE NONE 37
LSB C31 C32 SINGLE NONE 38
LSB C34 C35 SINGLE NONE 39
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
LSB MurckoScaffold S1 scaffold 'O=C(CCCCC1O[C@@H]1CCC1CO1)N1C[C@H](c2ccccc2)OC1=O' InChI=1S/C20H25NO5/c22-19(9-5-4-8-16-17(25-16)11-10-15-13-24-15)21-12-18(26-20(21)23)14-6-2-1-3-7-14/h1-3,6-7,15-18H,4-5,8-13H2/t15-,16-,17-,18-/m1/s1 QJOZKFZTODNNPW-BRSBDYLESA-N
LSB amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
LSB phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
LSB C1 S1 1
LSB C2 S1 1
LSB C3 S1 1
LSB C4 S1 1
LSB C5 S1 1
LSB C6 S1 1
LSB C8 S1 1
LSB C9 S1 1
LSB O10 S1 1
LSB C11 S1 1
LSB N12 S1 1
LSB C13 S1 1
LSB C14 S1 1
LSB C15 S1 1
LSB C16 S1 1
LSB C17 S1 1
LSB C18 S1 1
LSB C19 S1 1
LSB C20 S1 1
LSB C21 S1 1
LSB C22 S1 1
LSB C23 S1 1
LSB O25 S1 1
LSB O26 S1 1
LSB O33 S1 1
LSB O36 S1 1
LSB N12 F1 1
LSB C13 F1 1
LSB O26 F1 1
LSB C14 F1 1
LSB C1 F2 1
LSB C2 F2 1
LSB C3 F2 1
LSB C4 F2 1
LSB C5 F2 1
LSB C6 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id LSB
_pdbe_chem_comp_rdkit_properties.exactmw 501.309
_pdbe_chem_comp_rdkit_properties.amw 501.664
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 19
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 36
_pdbe_chem_comp_rdkit_properties.NumAtoms 79
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.724
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 3
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 9
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 275.526
_pdbe_chem_comp_rdkit_properties.tpsa 91.900
_pdbe_chem_comp_rdkit_properties.CrippenClogP 5.349
_pdbe_chem_comp_rdkit_properties.CrippenMR 135.973
_pdbe_chem_comp_rdkit_properties.chi0v 17.397
_pdbe_chem_comp_rdkit_properties.chi1v 9.258
_pdbe_chem_comp_rdkit_properties.chi2v 4.605
_pdbe_chem_comp_rdkit_properties.chi3v 4.605
_pdbe_chem_comp_rdkit_properties.chi4v 2.674
_pdbe_chem_comp_rdkit_properties.chi0n 60.397
_pdbe_chem_comp_rdkit_properties.chi1n 30.666
_pdbe_chem_comp_rdkit_properties.chi2n 4.605
_pdbe_chem_comp_rdkit_properties.chi3n 4.605
_pdbe_chem_comp_rdkit_properties.chi4n 2.674
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.960
_pdbe_chem_comp_rdkit_properties.kappa1 5.800
_pdbe_chem_comp_rdkit_properties.kappa2 10.425
_pdbe_chem_comp_rdkit_properties.kappa3 4.941
_pdbe_chem_comp_rdkit_properties.Phi 1.680
#
_pdbe_chem_comp_external_mappings.comp_id LSB
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource ZINC
_pdbe_chem_comp_external_mappings.resource_id ZINC000098209127
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
LSB C1 7.544 0.158 1.374 ETKDGv3 1
LSB C2 8.339 0.732 2.295 ETKDGv3 2
LSB C3 9.537 1.492 1.880 ETKDGv3 3
LSB C4 9.830 1.625 0.581 ETKDGv3 4
LSB C5 8.956 1.014 -0.440 ETKDGv3 5
LSB C6 7.873 0.321 -0.068 ETKDGv3 6
LSB C7 5.122 1.718 1.350 ETKDGv3 7
LSB C8 4.962 0.238 1.731 ETKDGv3 8
LSB C9 6.296 -0.590 1.798 ETKDGv3 9
LSB O10 6.085 -1.703 0.937 ETKDGv3 10
LSB C11 4.847 -1.614 0.346 ETKDGv3 11
LSB N12 4.132 -0.458 0.747 ETKDGv3 12
LSB C13 2.752 -0.148 0.472 ETKDGv3 13
LSB C14 2.120 -0.483 -0.872 ETKDGv3 14
LSB C15 0.584 -0.179 -0.913 ETKDGv3 15
LSB C16 -0.125 -0.637 -2.222 ETKDGv3 16
LSB C17 -1.642 -0.287 -2.248 ETKDGv3 17
LSB C18 -2.488 -0.651 -0.998 ETKDGv3 18
LSB C19 -3.594 0.311 -0.682 ETKDGv3 19
LSB C20 -4.773 -0.119 0.206 ETKDGv3 20
LSB C21 -5.765 1.036 0.378 ETKDGv3 21
LSB C22 -6.897 0.691 1.368 ETKDGv3 22
LSB C23 -7.369 1.803 2.248 ETKDGv3 23
LSB C24 -8.730 1.702 2.939 ETKDGv3 24
LSB O25 4.399 -2.492 -0.436 ETKDGv3 25
LSB O26 2.080 0.450 1.355 ETKDGv3 26
LSB C27 2.938 0.145 -2.034 ETKDGv3 27
LSB C28 2.930 1.675 -2.071 ETKDGv3 28
LSB O29 0.361 1.201 -0.736 ETKDGv3 29
LSB C30 0.137 -2.115 -2.576 ETKDGv3 30
LSB C31 -2.580 -2.102 -0.479 ETKDGv3 31
LSB C32 -3.263 -3.018 -1.491 ETKDGv3 32
LSB O33 -2.379 0.297 0.040 ETKDGv3 33
LSB C34 -7.773 -0.560 1.137 ETKDGv3 34
LSB C35 -8.619 -0.419 -0.124 ETKDGv3 35
LSB O36 -6.479 0.806 2.709 ETKDGv3 36
LSB H2 8.111 0.652 3.351 ETKDGv3 37
LSB H3 10.174 1.943 2.630 ETKDGv3 38
LSB H4 10.706 2.183 0.276 ETKDGv3 39
LSB H5 9.191 1.133 -1.489 ETKDGv3 40
LSB H6 7.233 -0.112 -0.826 ETKDGv3 41
LSB H7 5.807 2.227 2.061 ETKDGv3 42
LSB H7A 4.140 2.232 1.402 ETKDGv3 43
LSB H7B 5.514 1.819 0.317 ETKDGv3 44
LSB H8 4.463 0.185 2.725 ETKDGv3 45
LSB H9 6.428 -0.982 2.831 ETKDGv3 46
LSB H14 2.211 -1.582 -0.973 ETKDGv3 47
LSB H15 0.125 -0.755 -0.074 ETKDGv3 48
LSB H16 0.312 -0.049 -3.058 ETKDGv3 49
LSB H17 -2.119 -0.752 -3.137 ETKDGv3 50
LSB H17A -1.713 0.809 -2.429 ETKDGv3 51
LSB H19 -3.685 1.230 -1.301 ETKDGv3 52
LSB H20 -4.419 -0.436 1.212 ETKDGv3 53
LSB H20A -5.286 -0.971 -0.285 ETKDGv3 54
LSB H21 -5.207 1.932 0.730 ETKDGv3 55
LSB H21A -6.213 1.291 -0.606 ETKDGv3 56
LSB H23 -6.870 2.793 2.177 ETKDGv3 57
LSB H24 -9.534 1.606 2.180 ETKDGv3 58
LSB H24A -8.775 0.846 3.645 ETKDGv3 59
LSB H24B -8.911 2.631 3.519 ETKDGv3 60
LSB H27 2.583 -0.240 -3.012 ETKDGv3 61
LSB H27A 3.995 -0.187 -1.953 ETKDGv3 62
LSB H28 1.956 2.051 -2.445 ETKDGv3 63
LSB H28A 3.138 2.101 -1.068 ETKDGv3 64
LSB H28B 3.716 2.029 -2.770 ETKDGv3 65
LSB HO29 0.006 1.340 0.180 ETKDGv3 66
LSB H30 -0.541 -2.457 -3.386 ETKDGv3 67
LSB H30A 0.025 -2.780 -1.700 ETKDGv3 68
LSB H30B 1.170 -2.239 -2.961 ETKDGv3 69
LSB H31 -1.571 -2.487 -0.247 ETKDGv3 70
LSB H31A -3.133 -2.163 0.480 ETKDGv3 71
LSB H32 -4.280 -2.643 -1.730 ETKDGv3 72
LSB H32A -2.672 -3.080 -2.426 ETKDGv3 73
LSB H32B -3.352 -4.040 -1.065 ETKDGv3 74
LSB H34 -7.126 -1.456 1.043 ETKDGv3 75
LSB H34A -8.444 -0.758 1.998 ETKDGv3 76
LSB H35 -7.969 -0.366 -1.023 ETKDGv3 77
LSB H35A -9.284 -1.302 -0.225 ETKDGv3 78
LSB H35B -9.247 0.495 -0.070 ETKDGv3 79
#