Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : LMT

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 81


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1B C C1* R N N 0 -0.512 0.321 -5.643
2 C2B C C2* R N N 0 -0.46 -0.468 -6.953
3 C3B C C3* S N N 0 0.906 -1.148 -7.074
4 C4B C C4* S N N 0 1.998 -0.085 -6.91
5 C5B C C5* R N N 0 1.762 0.675 -5.604
6 C6B C C6* N N N 0 2.867 1.717 -5.416
7 O1B O O1* N N N 0 -0.291 -0.565 -4.545
8 O2B O O2* N N N 0 -1.489 -1.459 -6.955
9 O3B O O3* N N N 0 1.026 -1.766 -8.357
10 O4' O O4* N N N 0 3.28 -0.716 -6.871
11 O5B O O5* N N N 0 0.495 1.33 -5.648
12 O6B O O6* N N N 0 2.652 2.424 -4.193
13 C1' C C1' R N N 0 -1.705 -0.039 -0.712
14 C2' C C2' R N N 0 -2.591 0.562 -1.805
15 C3' C C3' R N N 0 -2.206 -0.054 -3.155
16 C4' C C4' S N N 0 -0.699 0.128 -3.364
17 C5' C C5' R N N 0 0.044 -0.438 -2.153
18 C6' C C6' N N N 0 1.551 -0.289 -2.369
19 O1' O O1' N N N 0 -2.079 0.505 0.554
20 O2' O O2' N N N 0 -3.962 0.274 -1.522
21 O3' O O3' N N N 0 -2.919 0.601 -4.206
22 O5' O O5' N N N 0 -0.338 0.269 -0.976
23 O6' O O6' N N N 0 2.25 -0.896 -1.28
24 C1 C C1 N N N 0 -1.223 -0.093 1.53
25 C2 C C2 N N N 0 -1.573 0.449 2.917
26 C3 C C3 N N N 0 -0.656 -0.191 3.961
27 C4 C C4 N N N 0 -1.006 0.351 5.348
28 C5 C C5 N N N 0 -0.09 -0.289 6.392
29 C6 C C6 N N N 0 -0.439 0.253 7.779
30 C7 C C7 N N N 0 0.476 -0.387 8.824
31 C8 C C8 N N N 0 0.126 0.154 10.211
32 C9 C C9 N N N 0 1.043 -0.486 11.255
33 C10 C C10 N N N 0 0.693 0.056 12.642
34 C11 C C11 N N N 0 1.609 -0.584 13.687
35 C12 C C12 N N N 0 1.26 -0.041 15.074
36 H1B H H1* N N N 0 -1.491 0.788 -5.54
37 H2B H H2* N N N 0 -0.605 0.21 -7.794
38 H3B H H3* N N N 0 1.01 -1.902 -6.294
39 H4B H H4* N N N 0 1.959 0.609 -7.749
40 H5B H H5* N N N 0 1.778 -0.024 -4.769
41 H6'2 H 2H6* N N N 0 3.835 1.217 -5.382
42 H6'1 H 1H6* N N N 0 2.849 2.419 -6.25
43 H2O1 H 1H2O N N N 0 -2.331 -0.989 -6.877
44 H3O1 H 1H3O N N N 0 0.322 -2.426 -8.416
45 H4O1 H 1H4O N N N 0 3.387 -1.182 -7.711
46 H6B H H6* N N N 0 3.368 3.069 -4.114
47 H1' H H1' N N N 0 -1.835 -1.121 -0.694
48 H2' H H2' N N N 0 -2.445 1.641 -1.843
49 H3' H H3' N N N 0 -2.45 -1.116 -3.156
50 H4' H H4' N N N 0 -0.471 1.189 -3.468
51 H5' H H5' N N N 0 -0.202 -1.493 -2.038
52 H6D H 2H6' N N N 0 1.835 -0.778 -3.301
53 H6E H 1H6' N N N 0 1.809 0.768 -2.421
54 H2O2 H 2H2O N N N 0 -4.161 0.679 -0.667
55 H3O2 H 2H3O N N N 0 -3.861 0.461 -4.035
56 H6' H H6' N N N 0 3.194 -0.781 -1.455
57 H12 H 2H1 N N N 0 -0.185 0.144 1.297
58 H11 H 1H1 N N N 0 -1.359 -1.174 1.518
59 H22 H 2H2 N N N 0 -2.611 0.211 3.149
60 H21 H 1H2 N N N 0 -1.437 1.53 2.929
61 H32 H 2H3 N N N 0 0.381 0.046 3.729
62 H31 H 1H3 N N N 0 -0.793 -1.272 3.949
63 H42 H 2H4 N N N 0 -2.044 0.113 5.58
64 H41 H 1H4 N N N 0 -0.87 1.432 5.36
65 H52 H 2H5 N N N 0 0.947 -0.051 6.16
66 H51 H 1H5 N N N 0 -0.226 -1.371 6.38
67 H62 H 2H6 N N N 0 -1.477 0.014 8.012
68 H61 H 1H6 N N N 0 -0.303 1.334 7.791
69 H72 H 2H7 N N N 0 1.514 -0.149 8.591
70 H71 H 1H7 N N N 0 0.34 -1.469 8.812
71 H82 H 2H8 N N N 0 -0.911 -0.083 10.443
72 H81 H 1H8 N N N 0 0.263 1.236 10.223
73 H92 H 2H9 N N N 0 2.081 -0.248 11.023
74 H91 H 1H9 N N N 0 0.907 -1.567 11.243
75 H102 H 2H10 N N N 0 -0.344 -0.181 12.875
76 H101 H 1H10 N N N 0 0.829 1.138 12.654
77 H112 H 2H11 N N N 0 2.647 -0.346 13.454
78 H111 H 1H11 N N N 0 1.473 -1.665 13.675
79 H123 H 3H12 N N N 0 1.913 -0.498 15.818
80 H122 H 2H12 N N N 0 1.396 1.039 15.086
81 H121 H 1H12 N N N 0 0.222 -0.279 15.306