Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : LHA

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 125


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C11 C C11 S N N 0 -3.724 -2.459 1.898
2 O11 O O11 N N N 0 -3.374 -1.957 0.606
3 C21 C C21 R N N 0 -3.036 -3.807 2.126
4 N21 N N21 N N N 0 -1.583 -3.646 1.989
5 C31 C C31 R N N 0 -3.54 -4.812 1.084
6 O31 O O31 N N N 0 -2.958 -6.093 1.335
7 C41 C C41 S N N 0 -5.065 -4.913 1.185
8 O41 O O41 N N N 0 -5.553 -5.792 0.169
9 C51 C C51 R N N 0 -5.675 -3.522 0.993
10 O51 O O51 N N N 0 -5.141 -2.63 1.974
11 C61 C C61 N N N 0 -7.194 -3.604 1.151
12 O61 O O61 N N N 0 -7.77 -2.319 0.905
13 C12 C C12 R N N 0 -3.215 1.922 -1.079
14 N12 N N12 N N N 0 -3.23 3.384 -1.175
15 C22 C C22 N N N 0 -4.546 1.434 -0.505
16 C32 C C32 S N N 0 -4.531 -0.092 -0.405
17 N32 N N32 N N N 0 -5.809 -0.56 0.147
18 C42 C C42 R N N 0 -3.388 -0.531 0.513
19 C52 C C52 R N N 0 -2.056 -0.044 -0.062
20 O52 O O52 N N N 0 -0.989 -0.455 0.796
21 C62 C C62 S N N 0 -2.072 1.482 -0.161
22 O62 O O62 N N N 0 -0.828 1.937 -0.698
23 C13 C C13 S N N 0 0.248 -0.681 0.117
24 O13 O O13 N N N 0 0.135 -1.816 -0.769
25 C23 C C23 R N N 0 1.35 -1.075 1.124
26 O23 O O23 N N N 0 2.155 0.059 1.454
27 C33 C C33 R N N 0 2.188 -2.132 0.37
28 O33 O O33 N N N 0 3.535 -1.684 0.212
29 C43 C C43 R N N 0 1.492 -2.252 -1.003
30 C53 C C53 N N N 0 1.509 -3.705 -1.484
31 O53 O O53 N N N 0 0.84 -3.797 -2.743
32 C14 C C14 R N N 0 4.486 -2.741 0.067
33 C24 C C24 R N N 0 5.892 -2.204 0.347
34 N24 N N24 N N N 0 6.185 -1.093 -0.567
35 C34 C C34 R N N 0 6.911 -3.328 0.131
36 O34 O O34 N N N 0 6.666 -4.381 1.065
37 C44 C C44 S N N 0 6.767 -3.864 -1.297
38 O44 O O44 N N N 0 7.076 -2.827 -2.23
39 C54 C C54 S N N 0 5.327 -4.336 -1.514
40 O54 O O54 N N N 0 4.43 -3.252 -1.266
41 C64 C C64 N N N 0 5.161 -4.818 -2.956
42 N64 N N64 N N N 0 3.822 -5.398 -3.127
43 C15 C C15 N N N 0 1.698 0.784 2.598
44 C25 C C25 N N N 0 2.63 1.969 2.856
45 N25 N N25 N N N 0 2.541 2.915 1.736
46 C35 C C35 N N N 0 3.425 4.069 1.95
47 C45 C C45 N N N 0 3.305 5.03 0.765
48 C16 C C16 N Y N 0 4.212 6.214 0.985
49 C26 C C26 N Y N 0 3.74 7.331 1.648
50 C36 C C36 N Y N 0 4.571 8.417 1.849
51 C46 C C46 N Y N 0 5.874 8.385 1.388
52 C56 C C56 N Y N 0 6.346 7.267 0.726
53 C66 C C66 N Y N 0 5.516 6.18 0.528
54 C17 C C17 N N N 0 -3.767 3.983 -2.256
55 O17 O O17 N N N 0 -4.239 3.312 -3.149
56 C27 C C27 S N N 0 -3.783 5.486 -2.354
57 O27 O O27 N N N 0 -4.293 5.875 -3.631
58 C37 C C37 N N N 0 -4.675 6.061 -1.252
59 C47 C C47 N N N 0 -4.592 7.588 -1.273
60 N47 N N47 N N N 0 -5.449 8.139 -0.214
61 H11 H H11 N N N 0 -3.402 -1.752 2.662
62 H21 H H21 N N N 0 -3.271 -4.172 3.126
63 H211 H 1H21 N N N 0 -1.227 -2.984 2.663
64 H212 H 2H21 N N N 0 -1.111 -4.534 2.072
65 H31 H H31 N N N 0 -3.261 -4.473 0.087
66 HO31 H HO31 N N N 0 -3.234 -6.779 0.712
67 H41 H H41 N N N 0 -5.341 -5.3 2.165
68 HO41 H HO41 N N N 0 -6.514 -5.903 0.174
69 H51 H H51 N N N 0 -5.433 -3.153 -0.004
70 H611 H 1H61 N N N 0 -7.595 -4.325 0.438
71 H612 H 2H61 N N N 0 -7.437 -3.922 2.165
72 HO61 H HO61 N N N 0 -8.733 -2.297 0.988
73 H12 H H12 N N N 0 -3.069 1.494 -2.071
74 HN12 H HN12 N N N 0 -2.852 3.92 -0.46
75 H221 H 1H22 N N N 0 -4.692 1.862 0.487
76 H222 H 2H22 N N N 0 -5.36 1.748 -1.158
77 H32 H H32 N N N 0 -4.385 -0.52 -1.397
78 H321 H 1H32 N N N 0 -6.581 -0.271 -0.435
79 H322 H 2H32 N N N 0 -5.805 -1.561 0.271
80 H42 H H42 N N N 0 -3.534 -0.104 1.505
81 H52 H H52 N N N 0 -1.911 -0.472 -1.054
82 H62 H H62 N N N 0 -2.218 1.91 0.831
83 HO62 H HO62 N N N 0 -0.767 2.898 -0.789
84 H13 H H13 N N N 0 0.541 0.208 -0.442
85 H23 H H23 N N N 0 0.91 -1.504 2.024
86 H33 H H33 N N N 0 2.161 -3.086 0.897
87 H43 H H43 N N N 0 1.978 -1.604 -1.733
88 H531 H 1H53 N N N 0 2.54 -4.038 -1.595
89 H532 H 2H53 N N N 0 0.999 -4.335 -0.755
90 HO53 H HO53 N N N 0 0.812 -4.692 -3.109
91 H14 H H14 N N N 0 4.253 -3.538 0.772
92 H24 H H24 N N N 0 5.949 -1.853 1.377
93 H241 H 1H24 N N N 0 5.523 -0.341 -0.447
94 H242 H 2H24 N N N 0 7.131 -0.764 -0.445
95 H34 H H34 N N N 0 7.919 -2.938 0.275
96 HO34 H HO34 N N N 0 7.276 -5.127 0.984
97 H44 H H44 N N N 0 7.451 -4.701 -1.441
98 HO44 H HO44 N N N 0 7.973 -2.476 -2.146
99 H54 H H54 N N N 0 5.106 -5.155 -0.829
100 H641 H 1H64 N N N 0 5.281 -3.976 -3.637
101 H642 H 2H64 N N N 0 5.914 -5.574 -3.176
102 HN41 H 1HN4 N N N 0 3.11 -4.683 -3.085
103 HN42 H 2HN4 N N N 0 3.76 -5.918 -3.989
104 H151 H 1H15 N N N 0 0.687 1.149 2.416
105 H152 H 2H15 N N N 0 1.696 0.127 3.467
106 H251 H 1H25 N N N 0 2.334 2.47 3.778
107 H252 H 2H25 N N N 0 3.655 1.612 2.95
108 HN25 H HN25 N N N 0 1.588 3.212 1.587
109 H351 H 1H35 N N N 0 3.134 4.584 2.866
110 H352 H 2H35 N N N 0 4.456 3.726 2.037
111 H451 H 1H45 N N N 0 3.596 4.515 -0.151
112 H452 H 2H45 N N N 0 2.274 5.373 0.678
113 H26 H H26 N N N 0 2.722 7.356 2.008
114 H36 H H36 N N N 0 4.203 9.291 2.366
115 H46 H H46 N N N 0 6.523 9.234 1.545
116 H56 H H56 N N N 0 7.364 7.242 0.366
117 H66 H H66 N N N 0 5.885 5.305 0.014
118 H27 H H27 N N N 0 -2.768 5.869 -2.237
119 HO27 H HO27 N N N 0 -5.194 5.569 -3.804
120 H371 H 1H37 N N N 0 -5.706 5.75 -1.42
121 H372 H 2H37 N N N 0 -4.338 5.692 -0.283
122 H471 H 1H47 N N N 0 -3.561 7.899 -1.104
123 H472 H 2H47 N N N 0 -4.929 7.957 -2.242
124 HN71 H 1HN7 N N N 0 -5.412 9.148 -0.207
125 HN72 H 2HN7 N N N 0 -6.399 7.813 -0.311