data_LHA
#
_chem_comp.id LHA
_chem_comp.name "DOUBLY FUNCTIONALIZED PAROMOMYCIN PM-II-162"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C37 H65 N7 O16"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms
;(2S)-4-AMINO-N-[(1R,2S,3R,4R,5S)-5-AMINO-4-[(2-AMINO-2-DEOXY-ALPHA-D-GLUCOPYRANOSYL)OXY]-3-{[3-O-(2,6-DIAMINO-2,6-DIDEO
XY-BETA-L-IDOPYRANOSYL)-2-O-{2-[(2-PHENYLETHYL)AMINO]ETHYL}-BETA-D-RIBOFURANOSYL]OXY}-2-HYDROXYCYCLOHEXYL]-2-HYDROXYBUTA
NAMIDE
;
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2007-06-05
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag ?
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 863.949
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code LHA
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details "Corina V3.40"
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LHA C11 C11 C 0 1 N N S N N N 13.920 8.129 4.664 -3.724 -2.459 1.898 C11 LHA 1
LHA O11 O11 O 0 1 N N N N N N 14.751 7.206 4.257 -3.374 -1.957 0.606 O11 LHA 2
LHA C21 C21 C 0 1 N N R N N N 12.491 7.977 3.990 -3.036 -3.807 2.126 C21 LHA 3
LHA N21 N21 N 0 1 N N N N N N 11.986 6.669 4.192 -1.583 -3.646 1.989 N21 LHA 4
LHA C31 C31 C 0 1 N N R N N N 12.598 8.339 2.456 -3.540 -4.812 1.084 C31 LHA 5
LHA O31 O31 O 0 1 N N N N N N 11.306 8.212 1.914 -2.958 -6.093 1.335 O31 LHA 6
LHA C41 C41 C 0 1 N N S N N N 13.193 9.822 2.305 -5.065 -4.913 1.185 C41 LHA 7
LHA O41 O41 O 0 1 N N N N N N 13.296 10.162 0.853 -5.553 -5.792 0.169 O41 LHA 8
LHA C51 C51 C 0 1 N N R N N N 14.667 9.886 2.967 -5.675 -3.522 0.993 C51 LHA 9
LHA O51 O51 O 0 1 N N N N N N 14.445 9.509 4.405 -5.141 -2.630 1.974 O51 LHA 10
LHA C61 C61 C 0 1 N N N N N N 15.193 11.243 2.845 -7.194 -3.604 1.151 C61 LHA 11
LHA O61 O61 O 0 1 N N N N N N 16.400 11.225 3.375 -7.770 -2.319 0.905 O61 LHA 12
LHA C12 C12 C 0 1 N N R N N N 17.823 4.719 5.974 -3.215 1.922 -1.079 C12 LHA 13
LHA N12 N12 N 0 1 N N N N N N 19.045 4.322 6.766 -3.230 3.384 -1.175 N12 LHA 14
LHA C22 C22 C 0 1 N N N N N N 18.309 5.885 4.903 -4.546 1.434 -0.505 C22 LHA 15
LHA C32 C32 C 0 1 N N S N N N 17.040 6.327 4.003 -4.531 -0.092 -0.405 C32 LHA 16
LHA N32 N32 N 0 1 N N N N N N 17.396 7.377 3.012 -5.809 -0.560 0.147 N32 LHA 17
LHA C42 C42 C 0 1 N N R N N N 15.824 6.850 5.024 -3.388 -0.531 0.513 C42 LHA 18
LHA C52 C52 C 0 1 N N R N N N 15.437 5.694 6.053 -2.056 -0.044 -0.062 C52 LHA 19
LHA O52 O52 O 0 1 N N N N N N 14.377 6.236 6.905 -0.989 -0.455 0.796 O52 LHA 20
LHA C62 C62 C 0 1 N N S N N N 16.663 5.294 6.911 -2.072 1.482 -0.161 C62 LHA 21
LHA O62 O62 O 0 1 N N N N N N 16.261 4.256 7.809 -0.828 1.937 -0.698 O62 LHA 22
LHA C13 C13 C 0 1 N N S N N N 13.350 5.304 7.263 0.248 -0.681 0.117 C13 LHA 23
LHA O13 O13 O 0 1 N N N N N N 12.068 5.911 6.917 0.135 -1.816 -0.769 O13 LHA 24
LHA C23 C23 C 0 1 N N R N N N 13.079 4.968 8.703 1.350 -1.075 1.124 C23 LHA 25
LHA O23 O23 O 0 1 N N N N N N 12.324 3.753 8.816 2.155 0.059 1.454 O23 LHA 26
LHA C33 C33 C 0 1 N N R N N N 12.419 6.232 9.169 2.188 -2.132 0.370 C33 LHA 27
LHA O33 O33 O 0 1 N N N N N N 11.971 6.279 10.459 3.535 -1.684 0.212 O33 LHA 28
LHA C43 C43 C 0 1 N N R N N N 11.346 6.532 8.092 1.492 -2.252 -1.003 C43 LHA 29
LHA C53 C53 C 0 1 N N N N N N 11.015 8.106 7.805 1.509 -3.705 -1.484 C53 LHA 30
LHA O53 O53 O 0 1 N N N N N N 12.168 8.817 7.517 0.840 -3.797 -2.743 O53 LHA 31
LHA C14 C14 C 0 1 N N R N N N 12.324 7.360 11.278 4.486 -2.741 0.067 C14 LHA 32
LHA C24 C24 C 0 1 N N R N N N 12.062 6.854 12.767 5.892 -2.204 0.347 C24 LHA 33
LHA N24 N24 N 0 1 N N N N N N 10.632 6.395 12.846 6.185 -1.093 -0.567 N24 LHA 34
LHA C34 C34 C 0 1 N N R N N N 12.429 8.100 13.735 6.911 -3.328 0.131 C34 LHA 35
LHA O34 O34 O 0 1 N N N N N N 13.852 8.402 13.552 6.666 -4.381 1.065 O34 LHA 36
LHA C44 C44 C 0 1 N N S N N N 11.480 9.426 13.347 6.767 -3.864 -1.297 C44 LHA 37
LHA O44 O44 O 0 1 N N N N N N 10.049 9.124 13.540 7.076 -2.827 -2.230 O44 LHA 38
LHA C54 C54 C 0 1 N N S N N N 11.770 9.836 11.765 5.327 -4.336 -1.514 C54 LHA 39
LHA O54 O54 O 0 1 N N N N N N 11.444 8.603 10.945 4.430 -3.252 -1.266 O54 LHA 40
LHA C64 C64 C 0 1 N N N N N N 10.863 11.066 11.358 5.161 -4.818 -2.956 C64 LHA 41
LHA N64 N64 N 0 1 N N N N N N 9.511 10.643 11.085 3.822 -5.398 -3.127 N64 LHA 42
LHA C15 C15 C 0 1 N N N N N N 12.920 2.490 9.051 1.698 0.784 2.598 C15 LHA 43
LHA C25 C25 C 0 1 N N N N N N 11.709 1.550 9.083 2.630 1.969 2.856 C25 LHA 44
LHA N25 N25 N 0 1 N N N N N N 11.192 1.250 7.714 2.541 2.915 1.736 N25 LHA 45
LHA C35 C35 C 0 1 N N N N N N 9.857 0.565 7.829 3.425 4.069 1.950 C35 LHA 46
LHA C45 C45 C 0 1 N N N N N N 9.932 -0.930 7.387 3.305 5.030 0.765 C45 LHA 47
LHA C16 C16 C 0 1 Y N N N N N 9.029 -1.348 6.188 4.212 6.214 0.985 C16 LHA 48
LHA C26 C26 C 0 1 Y N N N N N 7.632 -1.837 6.441 3.740 7.331 1.648 C26 LHA 49
LHA C36 C36 C 0 1 Y N N N N N 6.765 -2.239 5.312 4.571 8.417 1.849 C36 LHA 50
LHA C46 C46 C 0 1 Y N N N N N 7.272 -2.169 3.911 5.874 8.385 1.388 C46 LHA 51
LHA C56 C56 C 0 1 Y N N N N N 8.655 -1.686 3.646 6.346 7.267 0.726 C56 LHA 52
LHA C66 C66 C 0 1 Y N N N N N 9.536 -1.278 4.787 5.516 6.180 0.528 C66 LHA 53
LHA C17 C17 C 0 1 N N N N N N 19.624 3.132 6.487 -3.767 3.983 -2.256 C17 LHA 54
LHA O17 O17 O 0 1 N N N N N N 19.167 2.269 5.675 -4.239 3.312 -3.149 O17 LHA 55
LHA C27 C27 C 0 1 N N S N N N 20.929 2.916 7.296 -3.783 5.486 -2.354 C27 LHA 56
LHA O27 O27 O 0 1 N N N N N N 21.322 3.962 7.880 -4.293 5.875 -3.631 O27 LHA 57
LHA C37 C37 C 0 1 N N N N N N 20.739 1.819 8.385 -4.675 6.061 -1.252 C37 LHA 58
LHA C47 C47 C 0 1 N N N N N N 22.035 1.085 8.757 -4.592 7.588 -1.273 C47 LHA 59
LHA N47 N47 N 0 1 N N N N N N 21.864 0.346 10.034 -5.449 8.139 -0.214 N47 LHA 60
LHA H11 H11 H 0 1 N N N N N N 13.818 7.987 5.750 -3.402 -1.752 2.662 H11 LHA 61
LHA H21 H21 H 0 1 N N N N N N 11.780 8.673 4.459 -3.271 -4.172 3.126 H21 LHA 62
LHA H211 1H21 H 0 0 N N N N N N 11.867 6.217 3.308 -1.227 -2.984 2.663 H211 LHA 63
LHA H212 2H21 H 0 0 N N N N N N 12.630 6.146 4.750 -1.111 -4.534 2.072 H212 LHA 64
LHA H31 H31 H 0 1 N N N N N N 13.280 7.669 1.911 -3.261 -4.473 0.087 H31 LHA 65
LHA HO31 HO31 H 0 0 N N N N N N 10.668 8.183 2.618 -3.234 -6.779 0.712 HO31 LHA 66
LHA H41 H41 H 0 1 N N N N N N 12.530 10.537 2.814 -5.341 -5.300 2.165 H41 LHA 67
LHA HO41 HO41 H 0 0 N N N N N N 13.318 11.106 0.749 -6.514 -5.903 0.174 HO41 LHA 68
LHA H51 H51 H 0 1 N N N N N N 15.396 9.220 2.483 -5.433 -3.153 -0.004 H51 LHA 69
LHA H611 1H61 H 0 0 N N N N N N 15.241 11.544 1.788 -7.595 -4.325 0.438 H611 LHA 70
LHA H612 2H61 H 0 0 N N N N N N 14.545 11.968 3.359 -7.437 -3.922 2.165 H612 LHA 71
LHA HO61 HO61 H 0 0 N N N N N N 17.050 11.221 2.683 -8.733 -2.297 0.988 HO61 LHA 72
LHA H12 H12 H 0 1 N N N N N N 17.408 3.838 5.463 -3.069 1.494 -2.071 H12 LHA 73
LHA HN12 HN12 H 0 0 N N N N N N 19.415 4.921 7.476 -2.852 3.920 -0.460 HN12 LHA 74
LHA H221 1H22 H 0 0 N N N N N N 18.695 6.756 5.453 -4.692 1.862 0.487 H221 LHA 75
LHA H222 2H22 H 0 0 N N N N N N 19.106 5.489 4.256 -5.360 1.748 -1.158 H222 LHA 76
LHA H32 H32 H 0 1 N N N N N N 16.695 5.460 3.421 -4.385 -0.520 -1.397 H32 LHA 77
LHA H321 1H32 H 0 0 N N N N N N 17.476 8.260 3.475 -6.581 -0.271 -0.435 H321 LHA 78
LHA H322 2H32 H 0 0 N N N N N N 18.269 7.147 2.581 -5.805 -1.561 0.271 H322 LHA 79
LHA H42 H42 H 0 1 N N N N N N 16.159 7.717 5.612 -3.534 -0.104 1.505 H42 LHA 80
LHA H52 H52 H 0 1 N N N N N N 15.102 4.790 5.523 -1.911 -0.472 -1.054 H52 LHA 81
LHA H62 H62 H 0 1 N N N N N N 17.032 6.175 7.457 -2.218 1.910 0.831 H62 LHA 82
LHA HO62 HO62 H 0 0 N N N N N N 16.172 3.440 7.331 -0.767 2.898 -0.789 HO62 LHA 83
LHA H13 H13 H 0 1 N N N N N N 13.717 4.399 6.757 0.541 0.208 -0.442 H13 LHA 84
LHA H23 H23 H 0 1 N N N N N N 13.948 4.725 9.332 0.910 -1.504 2.024 H23 LHA 85
LHA H33 H33 H 0 1 N N N N N N 13.172 7.030 9.249 2.161 -3.086 0.897 H33 LHA 86
LHA H43 H43 H 0 1 N N N N N N 10.346 6.160 8.358 1.978 -1.604 -1.733 H43 LHA 87
LHA H531 1H53 H 0 0 N N N N N N 10.330 8.175 6.947 2.540 -4.038 -1.595 H531 LHA 88
LHA H532 2H53 H 0 0 N N N N N N 10.556 8.536 8.708 0.999 -4.335 -0.755 H532 LHA 89
LHA HO53 HO53 H 0 0 N N N N N N 12.215 8.980 6.582 0.812 -4.692 -3.109 HO53 LHA 90
LHA H14 H14 H 0 1 N N N N N N 13.369 7.671 11.133 4.253 -3.538 0.772 H14 LHA 91
LHA H24 H24 H 0 1 N N N N N N 12.677 5.997 13.079 5.949 -1.853 1.377 H24 LHA 92
LHA H241 1H24 H 0 0 N N N N N N 10.367 6.293 13.805 5.523 -0.341 -0.447 H241 LHA 93
LHA H242 2H24 H 0 0 N N N N N N 10.040 7.071 12.407 7.131 -0.764 -0.445 H242 LHA 94
LHA H34 H34 H 0 1 N N N N N N 12.233 7.848 14.788 7.919 -2.938 0.275 H34 LHA 95
LHA HO34 HO34 H 0 0 N N N N N N 14.046 8.467 12.624 7.276 -5.127 0.984 HO34 LHA 96
LHA H44 H44 H 0 1 N N N N N N 11.737 10.266 14.010 7.451 -4.701 -1.441 H44 LHA 97
LHA HO44 HO44 H 0 0 N N N N N N 9.861 9.059 14.469 7.973 -2.476 -2.146 HO44 LHA 98
LHA H54 H54 H 0 1 N N N N N N 12.813 10.142 11.597 5.106 -5.155 -0.829 H54 LHA 99
LHA H641 1H64 H 0 0 N N N N N N 10.851 11.791 12.186 5.281 -3.976 -3.637 H641 LHA 100
LHA H642 2H64 H 0 0 N N N N N N 11.279 11.523 10.448 5.914 -5.574 -3.176 H642 LHA 101
LHA HN41 1HN4 H 0 0 N N N N N N 9.012 10.545 11.946 3.110 -4.683 -3.085 HN41 LHA 102
LHA HN42 2HN4 H 0 0 N N N N N N 9.057 11.326 10.512 3.760 -5.918 -3.989 HN42 LHA 103
LHA H151 1H15 H 0 0 N N N N N N 13.629 2.217 8.255 0.687 1.149 2.416 H151 LHA 104
LHA H152 2H15 H 0 0 N N N N N N 13.521 2.457 9.972 1.696 0.127 3.467 H152 LHA 105
LHA H251 1H25 H 0 0 N N N N N N 12.011 0.605 9.558 2.334 2.470 3.778 H251 LHA 106
LHA H252 2H25 H 0 0 N N N N N N 10.907 2.049 9.647 3.655 1.612 2.950 H252 LHA 107
LHA HN25 HN25 H 0 0 N N N N N N 11.088 2.102 7.201 1.588 3.212 1.587 HN25 LHA 108
LHA H351 1H35 H 0 0 N N N N N N 9.529 0.606 8.878 3.134 4.584 2.866 H351 LHA 109
LHA H352 2H35 H 0 0 N N N N N N 9.148 1.083 7.167 4.456 3.726 2.037 H352 LHA 110
LHA H451 1H45 H 0 0 N N N N N N 10.973 -1.130 7.095 3.596 4.515 -0.151 H451 LHA 111
LHA H452 2H45 H 0 0 N N N N N N 9.567 -1.510 8.247 2.274 5.373 0.678 H452 LHA 112
LHA H26 H26 H 0 1 N N N N N N 7.258 -1.895 7.453 2.722 7.356 2.008 H26 LHA 113
LHA H36 H36 H 0 1 N N N N N N 5.760 -2.585 5.503 4.203 9.291 2.366 H36 LHA 114
LHA H46 H46 H 0 1 N N N N N N 6.637 -2.468 3.090 6.523 9.234 1.545 H46 LHA 115
LHA H56 H56 H 0 1 N N N N N N 9.023 -1.630 2.632 7.364 7.242 0.366 H56 LHA 116
LHA H66 H66 H 0 1 N N N N N N 10.541 -0.932 4.595 5.885 5.305 0.014 H66 LHA 117
LHA H27 H27 H 0 1 N N N N N N 21.683 2.610 6.555 -2.768 5.869 -2.237 H27 LHA 118
LHA HO27 HO27 H 0 0 N N N N N N 21.421 3.789 8.809 -5.194 5.569 -3.804 HO27 LHA 119
LHA H371 1H37 H 0 0 N N N N N N 20.349 2.303 9.292 -5.706 5.750 -1.420 H371 LHA 120
LHA H372 2H37 H 0 0 N N N N N N 20.050 1.068 7.971 -4.338 5.692 -0.283 H372 LHA 121
LHA H471 1H47 H 0 0 N N N N N N 22.288 0.372 7.958 -3.561 7.899 -1.104 H471 LHA 122
LHA H472 2H47 H 0 0 N N N N N N 22.842 1.823 8.877 -4.929 7.957 -2.242 H472 LHA 123
LHA HN71 1HN7 H 0 0 N N N N N N 21.826 -0.636 9.849 -5.412 9.148 -0.207 HN71 LHA 124
LHA HN72 2HN7 H 0 0 N N N N N N 22.637 0.541 10.638 -6.399 7.813 -0.311 HN72 LHA 125
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LHA C11 C21 SING N N 1
LHA C11 O11 SING N N 2
LHA C11 O51 SING N N 3
LHA C11 H11 SING N N 4
LHA O11 C42 SING N N 5
LHA C21 C31 SING N N 6
LHA C21 N21 SING N N 7
LHA C21 H21 SING N N 8
LHA N21 H211 SING N N 9
LHA N21 H212 SING N N 10
LHA C31 O31 SING N N 11
LHA C31 C41 SING N N 12
LHA C31 H31 SING N N 13
LHA O31 HO31 SING N N 14
LHA C41 O41 SING N N 15
LHA C41 C51 SING N N 16
LHA C41 H41 SING N N 17
LHA O41 HO41 SING N N 18
LHA C51 C61 SING N N 19
LHA C51 O51 SING N N 20
LHA C51 H51 SING N N 21
LHA C61 O61 SING N N 22
LHA C61 H611 SING N N 23
LHA C61 H612 SING N N 24
LHA O61 HO61 SING N N 25
LHA C12 C22 SING N N 26
LHA C12 N12 SING N N 27
LHA C12 C62 SING N N 28
LHA C12 H12 SING N N 29
LHA N12 C17 SING N N 30
LHA N12 HN12 SING N N 31
LHA C22 C32 SING N N 32
LHA C22 H221 SING N N 33
LHA C22 H222 SING N N 34
LHA C32 N32 SING N N 35
LHA C32 C42 SING N N 36
LHA C32 H32 SING N N 37
LHA N32 H321 SING N N 38
LHA N32 H322 SING N N 39
LHA C42 C52 SING N N 40
LHA C42 H42 SING N N 41
LHA C52 O52 SING N N 42
LHA C52 C62 SING N N 43
LHA C52 H52 SING N N 44
LHA O52 C13 SING N N 45
LHA C62 O62 SING N N 46
LHA C62 H62 SING N N 47
LHA O62 HO62 SING N N 48
LHA C13 O13 SING N N 49
LHA C13 C23 SING N N 50
LHA C13 H13 SING N N 51
LHA O13 C43 SING N N 52
LHA C23 O23 SING N N 53
LHA C23 C33 SING N N 54
LHA C23 H23 SING N N 55
LHA O23 C15 SING N N 56
LHA C33 C43 SING N N 57
LHA C33 O33 SING N N 58
LHA C33 H33 SING N N 59
LHA O33 C14 SING N N 60
LHA C43 C53 SING N N 61
LHA C43 H43 SING N N 62
LHA C53 O53 SING N N 63
LHA C53 H531 SING N N 64
LHA C53 H532 SING N N 65
LHA O53 HO53 SING N N 66
LHA C14 O54 SING N N 67
LHA C14 C24 SING N N 68
LHA C14 H14 SING N N 69
LHA C24 N24 SING N N 70
LHA C24 C34 SING N N 71
LHA C24 H24 SING N N 72
LHA N24 H241 SING N N 73
LHA N24 H242 SING N N 74
LHA C34 C44 SING N N 75
LHA C34 O34 SING N N 76
LHA C34 H34 SING N N 77
LHA O34 HO34 SING N N 78
LHA C44 C54 SING N N 79
LHA C44 O44 SING N N 80
LHA C44 H44 SING N N 81
LHA O44 HO44 SING N N 82
LHA C54 O54 SING N N 83
LHA C54 C64 SING N N 84
LHA C54 H54 SING N N 85
LHA C64 N64 SING N N 86
LHA C64 H641 SING N N 87
LHA C64 H642 SING N N 88
LHA N64 HN41 SING N N 89
LHA N64 HN42 SING N N 90
LHA C15 C25 SING N N 91
LHA C15 H151 SING N N 92
LHA C15 H152 SING N N 93
LHA C25 N25 SING N N 94
LHA C25 H251 SING N N 95
LHA C25 H252 SING N N 96
LHA N25 C35 SING N N 97
LHA N25 HN25 SING N N 98
LHA C35 C45 SING N N 99
LHA C35 H351 SING N N 100
LHA C35 H352 SING N N 101
LHA C45 C16 SING N N 102
LHA C45 H451 SING N N 103
LHA C45 H452 SING N N 104
LHA C16 C66 DOUB Y N 105
LHA C16 C26 SING Y N 106
LHA C26 C36 DOUB Y N 107
LHA C26 H26 SING N N 108
LHA C36 C46 SING Y N 109
LHA C36 H36 SING N N 110
LHA C46 C56 DOUB Y N 111
LHA C46 H46 SING N N 112
LHA C56 C66 SING Y N 113
LHA C56 H56 SING N N 114
LHA C66 H66 SING N N 115
LHA C17 O17 DOUB N N 116
LHA C17 C27 SING N N 117
LHA C27 O27 SING N N 118
LHA C27 C37 SING N N 119
LHA C27 H27 SING N N 120
LHA O27 HO27 SING N N 121
LHA C37 C47 SING N N 122
LHA C37 H371 SING N N 123
LHA C37 H372 SING N N 124
LHA C47 N47 SING N N 125
LHA C47 H471 SING N N 126
LHA C47 H472 SING N N 127
LHA N47 HN71 SING N N 128
LHA N47 HN72 SING N N 129
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LHA SMILES ACDLabs 10.04 O=C(NC5C(O)C(OC3OC(C(OC1OC(CN)C(O)C(O)C1N)C3OCCNCCc2ccccc2)CO)C(OC4OC(CO)C(O)C(O)C4N)C(N)C5)C(O)CCN
LHA SMILES_CANONICAL CACTVS 3.341 NCC[C@H](O)C(=O)N[C@@H]1C[C@H](N)[C@@H](O[C@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2N)[C@H](O[C@@H]3O[C@H](CO)[C@@H](O[C@H]4O[C@@H](CN)[C@@H](O)[C@H](O)[C@H]4N)[C@H]3OCCNCCc5ccccc5)[C@H]1O
LHA SMILES CACTVS 3.341 NCC[CH](O)C(=O)N[CH]1C[CH](N)[CH](O[CH]2O[CH](CO)[CH](O)[CH](O)[CH]2N)[CH](O[CH]3O[CH](CO)[CH](O[CH]4O[CH](CN)[CH](O)[CH](O)[CH]4N)[CH]3OCCNCCc5ccccc5)[CH]1O
LHA SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1ccc(cc1)CCNCCO[C@@H]2[C@@H]([C@H](O[C@H]2O[C@@H]3[C@H]([C@@H](C[C@@H]([C@H]3O[C@@H]4[C@@H]([C@H]([C@@H]([C@H](O4)CO)O)O)N)N)NC(=O)[C@H](CCN)O)O)CO)O[C@@H]5[C@@H]([C@H]([C@@H]([C@@H](O5)CN)O)O)N
LHA SMILES "OpenEye OEToolkits" 1.5.0 c1ccc(cc1)CCNCCOC2C(C(OC2OC3C(C(CC(C3OC4C(C(C(C(O4)CO)O)O)N)N)NC(=O)C(CCN)O)O)CO)OC5C(C(C(C(O5)CN)O)O)N
LHA InChI InChI 1.03 InChI=1S/C37H65N7O16/c38-8-6-19(47)34(53)44-18-12-17(40)30(58-36-24(42)29(52)27(50)21(14-45)56-36)32(25(18)48)60-37-33(54-11-10-43-9-7-16-4-2-1-3-5-16)31(22(15-46)57-37)59-35-23(41)28(51)26(49)20(13-39)55-35/h1-5,17-33,35-37,43,45-52H,6-15,38-42H2,(H,44,53)/t17-,18+,19-,20-,21+,22+,23+,24+,25-,26+,27+,28+,29+,30+,31+,32+,33+,35+,36+,37-/m0/s1
LHA InChIKey InChI 1.03 KITFYJSEQIOMTC-AFTVZRPJSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
LHA "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-4-amino-N-[(1R,2S,3R,4R,5S)-5-amino-4-[(2-amino-2-deoxy-alpha-D-glucopyranosyl)oxy]-3-{[3-O-(2,6-diamino-2,6-dideoxy-beta-L-idopyranosyl)-2-O-{2-[(2-phenylethyl)amino]ethyl}-beta-D-ribofuranosyl]oxy}-2-hydroxycyclohexyl]-2-hydroxybutanamide
LHA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-4-amino-N-[(1R,2S,3R,4R,5S)-5-amino-3-[(2S,3R,4R,5R)-4-[(2R,3R,4R,5S,6S)-3-amino-6-(aminomethyl)-4,5-dihydroxy-oxan-2-yl]oxy-5-(hydroxymethyl)-3-[2-(phenethylamino)ethoxy]oxolan-2-yl]oxy-4-[(2S,3R,4R,5S,6R)-3-amino-4,5-dihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-2-hydroxy-cyclohexyl]-2-hydroxy-butanamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LHA 'Create component' 2007-06-05 RCSB
LHA 'Modify descriptor' 2011-06-04 RCSB
LHA 'Modify synonyms' 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id LHA
_pdbx_chem_comp_synonyms.name
(2S)-4-AMINO-N-[(1R,2S,3R,4R,5S)-5-AMINO-4-[(2-AMINO-2-DEOXY-ALPHA-D-GLUCOPYRANOSYL)OXY]-3-{[3-O-(2,6-DIAMINO-2,6-DIDEOXY-BETA-L-IDOPYRANOSYL)-2-O-{2-[(2-PHENYLETHYL)AMINO]ETHYL}-BETA-D-RIBOFURANOSYL]OXY}-2-HYDROXYCYCLOHEXYL]-2-HYDROXYBUTANAMIDE
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id LHA
_pdbe_chem_comp_synonyms.name
'(2S)-4-AMINO-N-[(1R,2S,3R,4R,5S)-5-AMINO-4-[(2-AMINO-2-DEOXY-ALPHA-D-GLUCOPYRANOSYL)OXY]-3-{[3-O-(2,6-DIAMINO-2,6-DIDEOXY-BETA-L-IDOPYRANOSYL)-2-O-{2-[(2-PHENYLETHYL)AMINO]ETHYL}-BETA-D-RIBOFURANOSYL]OXY}-2-HYDROXYCYCLOHEXYL]-2-HYDROXYBUTANAMIDE'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
LHA C11 C 9.002 -3.047 1
LHA O11 O 10.301 -2.297 2
LHA C21 C 9.002 -4.547 3
LHA N21 N 10.301 -5.297 4
LHA C31 C 7.702 -5.297 5
LHA O31 O 7.702 -6.797 6
LHA C41 C 6.404 -4.547 7
LHA O41 O 5.104 -5.297 8
LHA C51 C 6.404 -3.047 9
LHA O51 O 7.702 -2.297 10
LHA C61 C 5.104 -2.297 11
LHA O61 O 3.805 -3.047 12
LHA C12 C 12.551 1.600 13
LHA N12 N 13.301 2.899 14
LHA C22 C 11.051 1.600 15
LHA C32 C 10.301 0.301 16
LHA N32 N 8.801 0.301 17
LHA C42 C 11.051 -0.998 18
LHA C52 C 12.551 -0.998 19
LHA O52 O 13.301 -2.297 20
LHA C62 C 13.301 0.301 21
LHA O62 O 14.801 0.301 22
LHA C13 C 14.801 -2.297 23
LHA O13 O 15.682 -1.084 24
LHA C23 C 15.682 -3.511 25
LHA O23 O 15.219 -4.938 26
LHA C33 C 17.109 -3.047 27
LHA O33 O 18.322 -3.929 28
LHA C43 C 17.109 -1.547 29
LHA C53 C 18.322 -0.666 30
LHA O53 O 18.166 0.826 31
LHA C14 C 19.693 -3.319 32
LHA C24 C 20.906 -4.201 33
LHA N24 N 20.750 -5.692 34
LHA C34 C 22.276 -3.591 35
LHA O34 O 23.490 -4.472 36
LHA C44 C 22.433 -2.099 37
LHA O44 O 23.804 -1.489 38
LHA C54 C 21.220 -1.217 39
LHA O54 O 19.849 -1.827 40
LHA C64 C 21.377 0.275 41
LHA N64 N 22.747 0.885 42
LHA C15 C 16.223 -6.052 43
LHA C25 C 15.759 -7.479 44
LHA N25 N 16.763 -8.594 45
LHA C35 C 18.230 -8.282 46
LHA C45 C 19.234 -9.396 47
LHA C16 C 20.701 -9.085 48
LHA C26 C 21.164 -7.658 49
LHA C36 C 22.632 -7.346 50
LHA C46 C 23.635 -8.461 51
LHA C56 C 23.172 -9.887 52
LHA C66 C 21.704 -10.199 53
LHA C17 C 12.551 4.198 54
LHA O17 O 11.051 4.198 55
LHA C27 C 13.301 5.497 56
LHA O27 O 14.801 5.497 57
LHA C37 C 12.551 6.796 58
LHA C47 C 13.301 8.095 59
LHA N47 N 12.551 9.394 60
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
LHA C11 C21 SINGLE NONE 1
LHA C11 O11 SINGLE BEGINDASH 2
LHA C11 O51 SINGLE NONE 3
LHA C42 O11 SINGLE BEGINDASH 4
LHA C21 C31 SINGLE NONE 5
LHA C21 N21 SINGLE BEGINDASH 6
LHA C31 O31 SINGLE BEGINWEDGE 7
LHA C31 C41 SINGLE NONE 8
LHA C41 O41 SINGLE BEGINDASH 9
LHA C41 C51 SINGLE NONE 10
LHA C51 C61 SINGLE BEGINWEDGE 11
LHA C51 O51 SINGLE NONE 12
LHA C61 O61 SINGLE NONE 13
LHA C12 C22 SINGLE NONE 14
LHA C12 N12 SINGLE BEGINWEDGE 15
LHA C12 C62 SINGLE NONE 16
LHA N12 C17 SINGLE NONE 17
LHA C22 C32 SINGLE NONE 18
LHA C32 N32 SINGLE BEGINWEDGE 19
LHA C32 C42 SINGLE NONE 20
LHA C42 C52 SINGLE NONE 21
LHA C52 O52 SINGLE BEGINWEDGE 22
LHA C52 C62 SINGLE NONE 23
LHA C13 O52 SINGLE BEGINDASH 24
LHA C62 O62 SINGLE BEGINDASH 25
LHA C13 O13 SINGLE NONE 26
LHA C13 C23 SINGLE NONE 27
LHA O13 C43 SINGLE NONE 28
LHA C23 O23 SINGLE BEGINWEDGE 29
LHA C23 C33 SINGLE NONE 30
LHA O23 C15 SINGLE NONE 31
LHA C33 C43 SINGLE NONE 32
LHA C33 O33 SINGLE BEGINWEDGE 33
LHA C14 O33 SINGLE BEGINWEDGE 34
LHA C43 C53 SINGLE BEGINDASH 35
LHA C53 O53 SINGLE NONE 36
LHA C14 O54 SINGLE NONE 37
LHA C14 C24 SINGLE NONE 38
LHA C24 N24 SINGLE BEGINWEDGE 39
LHA C24 C34 SINGLE NONE 40
LHA C34 C44 SINGLE NONE 41
LHA C34 O34 SINGLE BEGINDASH 42
LHA C44 C54 SINGLE NONE 43
LHA C44 O44 SINGLE BEGINWEDGE 44
LHA C54 O54 SINGLE NONE 45
LHA C54 C64 SINGLE BEGINWEDGE 46
LHA C64 N64 SINGLE NONE 47
LHA C15 C25 SINGLE NONE 48
LHA C25 N25 SINGLE NONE 49
LHA N25 C35 SINGLE NONE 50
LHA C35 C45 SINGLE NONE 51
LHA C45 C16 SINGLE NONE 52
LHA C16 C66 SINGLE NONE 53
LHA C16 C26 DOUBLE NONE 54
LHA C26 C36 SINGLE NONE 55
LHA C36 C46 DOUBLE NONE 56
LHA C46 C56 SINGLE NONE 57
LHA C56 C66 DOUBLE NONE 58
LHA C17 O17 DOUBLE NONE 59
LHA C17 C27 SINGLE NONE 60
LHA C27 O27 SINGLE BEGINDASH 61
LHA C27 C37 SINGLE NONE 62
LHA C37 C47 SINGLE NONE 63
LHA C47 N47 SINGLE NONE 64
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
LHA MurckoScaffold S1 scaffold 'c1ccc(CCNCCO[C@H]2[C@H](O[C@@H]3CCCC[C@H]3O[C@@H]3CCCCO3)OC[C@H]2O[C@@H]2CCCCO2)cc1' InChI=1S/C30H47NO7/c1-2-10-23(11-3-1)16-17-31-18-21-34-29-26(37-28-15-7-9-20-33-28)22-35-30(29)38-25-13-5-4-12-24(25)36-27-14-6-8-19-32-27/h1-3,10-11,24-31H,4-9,12-22H2/t24-,25-,26-,27-,28-,29-,30+/m1/s1 IIUDVTCUIGQWEM-BPZIUVSUSA-N
LHA amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
LHA cyclohexane F2 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
LHA furanose F3 fragment OC1CCCO1 InChI=1S/C4H8O2/c5-4-2-1-3-6-4/h4-5H,1-3H2 JNODDICFTDYODH-UHFFFAOYSA-N
LHA phenyl F4 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
LHA pyranose F5 fragment OC1CCCCO1 InChI=1S/C5H10O2/c6-5-3-1-2-4-7-5/h5-6H,1-4H2 CELWCAITJAEQNL-UHFFFAOYSA-N
LHA ribose F6 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
LHA Z2856434893 F7 fragment CC(O)CNC1CCCCC1 InChI=1S/C9H19NO/c1-8(11)7-10-9-5-3-2-4-6-9/h8-11H,2-7H2,1H3 HFHPBMVMXFZJNO-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
LHA C11 S1 1
LHA O11 S1 1
LHA C21 S1 1
LHA C31 S1 1
LHA C41 S1 1
LHA C51 S1 1
LHA O51 S1 1
LHA C12 S1 1
LHA C22 S1 1
LHA C32 S1 1
LHA C42 S1 1
LHA C52 S1 1
LHA O52 S1 1
LHA C62 S1 1
LHA C13 S1 1
LHA O13 S1 1
LHA C23 S1 1
LHA O23 S1 1
LHA C33 S1 1
LHA O33 S1 1
LHA C43 S1 1
LHA C14 S1 1
LHA C24 S1 1
LHA C34 S1 1
LHA C44 S1 1
LHA C54 S1 1
LHA O54 S1 1
LHA C15 S1 1
LHA C25 S1 1
LHA N25 S1 1
LHA C35 S1 1
LHA C45 S1 1
LHA C16 S1 1
LHA C26 S1 1
LHA C36 S1 1
LHA C46 S1 1
LHA C56 S1 1
LHA C66 S1 1
LHA N12 F1 1
LHA C17 F1 1
LHA O17 F1 1
LHA C27 F1 1
LHA C12 F2 1
LHA C22 F2 1
LHA C32 F2 1
LHA C42 F2 1
LHA C52 F2 1
LHA C62 F2 1
LHA C33 F3 1
LHA C43 F3 1
LHA O13 F3 1
LHA C13 F3 1
LHA C23 F3 1
LHA O52 F3 1
LHA C16 F4 1
LHA C66 F4 1
LHA C56 F4 1
LHA C46 F4 1
LHA C36 F4 1
LHA C26 F4 1
LHA C41 F5 1
LHA C51 F5 1
LHA O51 F5 1
LHA C11 F5 1
LHA C21 F5 1
LHA C31 F5 1
LHA O11 F5 1
LHA C44 F5 2
LHA C54 F5 2
LHA O54 F5 2
LHA C14 F5 2
LHA C24 F5 2
LHA C34 F5 2
LHA O33 F5 2
LHA C23 F6 1
LHA C33 F6 1
LHA C43 F6 1
LHA O13 F6 1
LHA C13 F6 1
LHA C53 F6 1
LHA O53 F6 1
LHA O33 F6 1
LHA O23 F6 1
LHA C37 F7 1
LHA C27 F7 1
LHA O27 F7 1
LHA C17 F7 1
LHA N12 F7 1
LHA C12 F7 1
LHA C22 F7 1
LHA C32 F7 1
LHA C42 F7 1
LHA C52 F7 1
LHA C62 F7 1
#
_pdbe_chem_comp_rdkit_properties.comp_id LHA
_pdbe_chem_comp_rdkit_properties.exactmw 863.449
_pdbe_chem_comp_rdkit_properties.amw 863.960
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 23
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 20
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 33
_pdbe_chem_comp_rdkit_properties.NumHBD 15
_pdbe_chem_comp_rdkit_properties.NumHBA 22
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 60
_pdbe_chem_comp_rdkit_properties.NumAtoms 125
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 23
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.811
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 4
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 4
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 20
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 439.544
_pdbe_chem_comp_rdkit_properties.tpsa 397.680
_pdbe_chem_comp_rdkit_properties.CrippenClogP -8.193
_pdbe_chem_comp_rdkit_properties.CrippenMR 206.504
_pdbe_chem_comp_rdkit_properties.chi0v 28.162
_pdbe_chem_comp_rdkit_properties.chi1v 14.707
_pdbe_chem_comp_rdkit_properties.chi2v 6.343
_pdbe_chem_comp_rdkit_properties.chi3v 6.343
_pdbe_chem_comp_rdkit_properties.chi4v 3.822
_pdbe_chem_comp_rdkit_properties.chi0n 93.162
_pdbe_chem_comp_rdkit_properties.chi1n 45.840
_pdbe_chem_comp_rdkit_properties.chi2n 6.343
_pdbe_chem_comp_rdkit_properties.chi3n 6.343
_pdbe_chem_comp_rdkit_properties.chi4n 3.822
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.150
_pdbe_chem_comp_rdkit_properties.kappa1 11.619
_pdbe_chem_comp_rdkit_properties.kappa2 22.977
_pdbe_chem_comp_rdkit_properties.kappa3 11.698
_pdbe_chem_comp_rdkit_properties.Phi 4.450
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
LHA UniChem ZINC ZINC000263620646
LHA UniChem SureChEMBL SCHEMBL10087625
LHA UniChem 'PubChem TPHARMA' 26694487
LHA UniChem PubChem 16736279
#