Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : KMK

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 66


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C2 C C1 N Y N 0 -6.975 2.26 -0.396
2 C7 C C2 N Y N 0 -4.891 -1.748 0.497
3 C4 C C3 N Y N 0 -4.823 2.395 0.443
4 C6 C C4 N Y N 0 -3.76 -1.056 0.93
5 CBG C C5 N N N 0 9.363 -0.719 1.254
6 OBE O O1 N N N 0 8.183 -0.593 0.418
7 CBD C C6 N N N 0 7.595 0.612 0.37
8 OBF O O2 N N N 0 8.052 1.533 1.007
9 CAZ C C7 N N N 0 6.365 0.818 -0.476
10 CBA C C8 N N N 0 5.254 -0.118 0.003
11 CAV C C9 N N N 0 4.017 0.069 -0.882
12 CAY C C10 N N N 0 5.899 2.271 -0.354
13 CAX C C11 N N N 0 4.67 2.485 -1.242
14 NAW N N1 N N N 0 3.649 1.492 -0.885
15 CBB C C12 N N N 0 2.398 1.877 -0.565
16 OBC O O3 N N N 0 2.132 3.06 -0.467
17 CAU C C13 N Y N 0 1.35 0.865 -0.335
18 CAT C C14 N Y N 0 0.441 1.024 0.716
19 CAO C C15 N Y N 0 -0.535 0.078 0.928
20 CAQ C C16 N Y N 0 1.26 -0.253 -1.169
21 CAR C C17 N Y N 0 0.282 -1.196 -0.952
22 CAS C C18 N Y N 0 -0.619 -1.037 0.098
23 N10 N N2 N N N 0 -1.606 -1.992 0.316
24 CAP C C19 N N N 0 -1.695 -3.165 -0.556
25 CBH C C20 N N N 0 -0.837 -4.294 0.019
26 CBI C C21 N N N 0 -0.93 -5.52 -0.892
27 OBJ O O4 N N N 0 -0.128 -6.574 -0.356
28 C9 C C22 N N N 0 -2.557 -1.823 1.417
29 N5 N N3 N Y N 0 -3.732 0.259 0.916
30 C4A C C23 N Y N 0 -4.794 0.933 0.486
31 N4 N N4 N N N 0 -3.739 3.142 0.851
32 N3 N N5 N Y N 0 -5.927 2.977 -0.002
33 N2 N N6 N N N 0 -8.094 2.931 -0.849
34 N1 N N7 N Y N 0 -7.0 0.942 -0.382
35 C8A C C24 N Y N 0 -5.946 0.235 0.045
36 N8 N N8 N Y N 0 -5.953 -1.1 0.067
37 H1 H H1 N N N 0 -4.895 -2.828 0.514
38 H2 H H2 N N N 0 9.105 -0.478 2.285
39 H3 H H3 N N N 0 9.738 -1.741 1.202
40 H4 H H4 N N N 0 10.133 -0.031 0.902
41 H5 H H5 N N N 0 6.601 0.599 -1.518
42 H6 H H6 N N N 0 5.595 -1.151 -0.063
43 H7 H H7 N N N 0 5.001 0.117 1.036
44 H8 H H8 N N N 0 4.244 -0.251 -1.899
45 H9 H H9 N N N 0 3.192 -0.521 -0.486
46 H10 H H10 N N N 0 5.64 2.483 0.684
47 H11 H H11 N N N 0 6.7 2.938 -0.673
48 H12 H H12 N N N 0 4.275 3.489 -1.084
49 H13 H H13 N N N 0 4.95 2.364 -2.289
50 H14 H H14 N N N 0 0.506 1.888 1.36
51 H15 H H15 N N N 0 -1.237 0.2 1.74
52 H16 H H16 N N N 0 1.958 -0.376 -1.985
53 H17 H H17 N N N 0 0.212 -2.059 -1.596
54 H18 H H18 N N N 0 -2.733 -3.494 -0.619
55 H19 H H19 N N N 0 -1.335 -2.906 -1.552
56 H20 H H20 N N N 0 0.201 -3.966 0.081
57 H21 H H21 N N N 0 -1.197 -4.553 1.014
58 H22 H H22 N N N 0 -1.967 -5.848 -0.955
59 H23 H H23 N N N 0 -0.57 -5.261 -1.888
60 H24 H H24 N N N 0 -0.14 -7.384 -0.883
61 H25 H H25 N N N 0 -2.08 -1.274 2.229
62 H26 H H26 N N N 0 -2.873 -2.803 1.778
63 H27 H H27 N N N 0 -3.776 4.11 0.815
64 H28 H H28 N N N 0 -2.938 2.699 1.174
65 H29 H H29 N N N 0 -8.102 3.9 -0.874
66 H30 H H30 N N N 0 -8.873 2.432 -1.143