data_KMK
#
_chem_comp.id KMK
_chem_comp.name
"methyl 1-[4-[[2,4-bis(azanyl)pteridin-6-yl]methyl-(3-oxidanylpropyl)amino]phenyl]carbonylpiperidine-4-carboxylate"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C24 H30 N8 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-06-07
_chem_comp.pdbx_modified_date 2020-07-10
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 494.546
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code KMK
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6RX6
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
KMK C2 C1 C 0 1 Y N N N N N 10.714 -12.069 14.700 -6.975 2.260 -0.396 C2 KMK 1
KMK C7 C2 C 0 1 Y N N N N N 9.255 -16.295 13.339 -4.891 -1.748 0.497 C7 KMK 2
KMK C4 C3 C 0 1 Y N N N N N 8.477 -12.585 14.979 -4.823 2.395 0.443 C4 KMK 3
KMK C6 C4 C 0 1 Y N N N N N 7.954 -15.993 13.747 -3.760 -1.056 0.930 C6 KMK 4
KMK CBG C5 C 0 1 N N N N N N 14.359 -20.948 19.254 9.363 -0.719 1.254 CBG KMK 5
KMK OBE O1 O 0 1 N N N N N N 14.106 -20.336 20.523 8.183 -0.593 0.418 OBE KMK 6
KMK CBD C6 C 0 1 N N N N N N 13.609 -19.092 20.327 7.595 0.612 0.370 CBD KMK 7
KMK OBF O2 O 0 1 N N N N N N 14.294 -18.119 20.009 8.052 1.533 1.007 OBF KMK 8
KMK CAZ C7 C 0 1 N N N N N N 12.093 -18.951 20.482 6.365 0.818 -0.476 CAZ KMK 9
KMK CBA C8 C 0 1 N N N N N N 11.575 -18.365 19.198 5.254 -0.118 0.003 CBA KMK 10
KMK CAV C9 C 0 1 N N N N N N 10.123 -18.067 19.366 4.017 0.069 -0.882 CAV KMK 11
KMK CAY C10 C 0 1 N N N N N N 11.415 -20.269 20.713 5.899 2.271 -0.354 CAY KMK 12
KMK CAX C11 C 0 1 N N N N N N 9.979 -19.942 21.053 4.670 2.485 -1.242 CAX KMK 13
KMK NAW N1 N 0 1 N N N N N N 9.368 -19.254 19.858 3.649 1.492 -0.885 NAW KMK 14
KMK CBB C12 C 0 1 N N N N N N 8.146 -19.616 19.369 2.398 1.877 -0.565 CBB KMK 15
KMK OBC O3 O 0 1 N N N N N N 7.525 -20.563 19.828 2.132 3.060 -0.467 OBC KMK 16
KMK CAU C13 C 0 1 Y N N N N N 7.577 -19.020 18.196 1.350 0.865 -0.335 CAU KMK 17
KMK CAT C14 C 0 1 Y N N N N N 8.300 -18.929 17.022 0.441 1.024 0.716 CAT KMK 18
KMK CAO C15 C 0 1 Y N N N N N 7.797 -18.326 15.876 -0.535 0.078 0.928 CAO KMK 19
KMK CAQ C16 C 0 1 Y N N N N N 6.273 -18.523 18.133 1.260 -0.253 -1.169 CAQ KMK 20
KMK CAR C17 C 0 1 Y N N N N N 5.747 -17.954 16.959 0.282 -1.196 -0.952 CAR KMK 21
KMK CAS C18 C 0 1 Y N N N N N 6.491 -17.865 15.788 -0.619 -1.037 0.098 CAS KMK 22
KMK N10 N2 N 0 1 N N N N N N 6.026 -17.265 14.651 -1.606 -1.992 0.316 N10 KMK 23
KMK CAP C19 C 0 1 N N N N N N 4.601 -16.974 14.393 -1.695 -3.165 -0.556 CAP KMK 24
KMK CBH C20 C 0 1 N N N N N N 4.339 -15.495 14.469 -0.837 -4.294 0.019 CBH KMK 25
KMK CBI C21 C 0 1 N N N N N N 4.693 -14.943 15.851 -0.930 -5.520 -0.892 CBI KMK 26
KMK OBJ O4 O 0 1 N N N N N N 4.736 -13.536 15.797 -0.128 -6.574 -0.356 OBJ KMK 27
KMK C9 C22 C 0 1 N N N N N N 6.924 -16.986 13.526 -2.557 -1.823 1.417 C9 KMK 28
KMK N5 N3 N 0 1 Y N N N N N 7.658 -14.789 14.308 -3.732 0.259 0.916 N5 KMK 29
KMK C4A C23 C 0 1 Y N N N N N 8.681 -13.894 14.401 -4.794 0.933 0.486 C4A KMK 30
KMK N4 N4 N 0 1 N N N N N N 7.269 -12.218 15.399 -3.739 3.142 0.851 N4 KMK 31
KMK N3 N5 N 0 1 Y N N N N N 9.485 -11.696 15.102 -5.927 2.977 -0.002 N3 KMK 32
KMK N2 N6 N 0 1 N N N N N N 11.712 -11.193 14.813 -8.094 2.931 -0.849 N2 KMK 33
KMK N1 N7 N 0 1 Y N N N N N 10.974 -13.277 14.165 -7.000 0.942 -0.382 N1 KMK 34
KMK C8A C24 C 0 1 Y N N N N N 9.987 -14.210 14.004 -5.946 0.235 0.045 C8A KMK 35
KMK N8 N8 N 0 1 Y N N N N N 10.297 -15.405 13.475 -5.953 -1.100 0.067 N8 KMK 36
KMK H1 H1 H 0 1 N N N N N N 9.451 -17.262 12.901 -4.895 -2.828 0.514 H1 KMK 37
KMK H2 H2 H 0 1 N N N N N N 14.763 -21.959 19.408 9.105 -0.478 2.285 H2 KMK 38
KMK H3 H3 H 0 1 N N N N N N 13.420 -21.011 18.684 9.738 -1.741 1.202 H3 KMK 39
KMK H4 H4 H 0 1 N N N N N N 15.088 -20.343 18.694 10.133 -0.031 0.902 H4 KMK 40
KMK H5 H5 H 0 1 N N N N N N 11.874 -18.269 21.316 6.601 0.599 -1.518 H5 KMK 41
KMK H6 H6 H 0 1 N N N N N N 11.714 -19.086 18.379 5.595 -1.151 -0.063 H6 KMK 42
KMK H7 H7 H 0 1 N N N N N N 12.120 -17.438 18.967 5.001 0.117 1.036 H7 KMK 43
KMK H8 H8 H 0 1 N N N N N N 10.009 -17.247 20.091 4.244 -0.251 -1.899 H8 KMK 44
KMK H9 H9 H 0 1 N N N N N N 9.708 -17.758 18.395 3.192 -0.521 -0.486 H9 KMK 45
KMK H10 H10 H 0 1 N N N N N N 11.462 -20.888 19.805 5.640 2.483 0.684 H10 KMK 46
KMK H11 H11 H 0 1 N N N N N N 11.893 -20.804 21.546 6.700 2.938 -0.673 H11 KMK 47
KMK H12 H12 H 0 1 N N N N N N 9.944 -19.275 21.927 4.275 3.489 -1.084 H12 KMK 48
KMK H13 H13 H 0 1 N N N N N N 9.427 -20.867 21.275 4.950 2.364 -2.289 H13 KMK 49
KMK H14 H14 H 0 1 N N N N N N 9.297 -19.344 16.994 0.506 1.888 1.360 H14 KMK 50
KMK H15 H15 H 0 1 N N N N N N 8.447 -18.212 15.021 -1.237 0.200 1.740 H15 KMK 51
KMK H16 H16 H 0 1 N N N N N N 5.649 -18.577 19.013 1.958 -0.376 -1.985 H16 KMK 52
KMK H17 H17 H 0 1 N N N N N N 4.736 -17.575 16.968 0.212 -2.059 -1.596 H17 KMK 53
KMK H18 H18 H 0 1 N N N N N N 3.985 -17.489 15.145 -2.733 -3.494 -0.619 H18 KMK 54
KMK H19 H19 H 0 1 N N N N N N 4.334 -17.337 13.390 -1.335 -2.906 -1.552 H19 KMK 55
KMK H20 H20 H 0 1 N N N N N N 4.949 -14.983 13.711 0.201 -3.966 0.081 H20 KMK 56
KMK H21 H21 H 0 1 N N N N N N 3.273 -15.308 14.270 -1.197 -4.553 1.014 H21 KMK 57
KMK H22 H22 H 0 1 N N N N N N 3.931 -15.259 16.578 -1.967 -5.848 -0.955 H22 KMK 58
KMK H23 H23 H 0 1 N N N N N N 5.676 -15.328 16.159 -0.570 -5.261 -1.888 H23 KMK 59
KMK H24 H24 H 0 1 N N N N N N 4.956 -13.192 16.655 -0.140 -7.384 -0.883 H24 KMK 60
KMK H25 H25 H 0 1 N N N N N N 6.306 -16.643 12.683 -2.080 -1.274 2.229 H25 KMK 61
KMK H26 H26 H 0 1 N N N N N N 7.422 -17.929 13.256 -2.873 -2.803 1.778 H26 KMK 62
KMK H27 H27 H 0 1 N N N N N N 7.310 -11.286 15.759 -3.776 4.110 0.815 H27 KMK 63
KMK H28 H28 H 0 1 N N N N N N 6.626 -12.252 14.634 -2.938 2.699 1.174 H28 KMK 64
KMK H29 H29 H 0 1 N N N N N N 12.554 -11.599 14.458 -8.102 3.900 -0.874 H29 KMK 65
KMK H30 H30 H 0 1 N N N N N N 11.493 -10.369 14.290 -8.873 2.432 -1.143 H30 KMK 66
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
KMK C7 N8 DOUB Y N 1
KMK C7 C6 SING Y N 2
KMK N8 C8A SING Y N 3
KMK C9 C6 SING N N 4
KMK C9 N10 SING N N 5
KMK C6 N5 DOUB Y N 6
KMK C8A N1 DOUB Y N 7
KMK C8A C4A SING Y N 8
KMK N1 C2 SING Y N 9
KMK N5 C4A SING Y N 10
KMK CAP CBH SING N N 11
KMK CAP N10 SING N N 12
KMK C4A C4 DOUB Y N 13
KMK CBH CBI SING N N 14
KMK N10 CAS SING N N 15
KMK C2 N2 SING N N 16
KMK C2 N3 DOUB Y N 17
KMK C4 N3 SING Y N 18
KMK C4 N4 SING N N 19
KMK CAS CAO DOUB Y N 20
KMK CAS CAR SING Y N 21
KMK OBJ CBI SING N N 22
KMK CAO CAT SING Y N 23
KMK CAR CAQ DOUB Y N 24
KMK CAT CAU DOUB Y N 25
KMK CAQ CAU SING Y N 26
KMK CAU CBB SING N N 27
KMK CBA CAV SING N N 28
KMK CBA CAZ SING N N 29
KMK CBG OBE SING N N 30
KMK CAV NAW SING N N 31
KMK CBB OBC DOUB N N 32
KMK CBB NAW SING N N 33
KMK NAW CAX SING N N 34
KMK OBF CBD DOUB N N 35
KMK CBD CAZ SING N N 36
KMK CBD OBE SING N N 37
KMK CAZ CAY SING N N 38
KMK CAY CAX SING N N 39
KMK C7 H1 SING N N 40
KMK CBG H2 SING N N 41
KMK CBG H3 SING N N 42
KMK CBG H4 SING N N 43
KMK CAZ H5 SING N N 44
KMK CBA H6 SING N N 45
KMK CBA H7 SING N N 46
KMK CAV H8 SING N N 47
KMK CAV H9 SING N N 48
KMK CAY H10 SING N N 49
KMK CAY H11 SING N N 50
KMK CAX H12 SING N N 51
KMK CAX H13 SING N N 52
KMK CAT H14 SING N N 53
KMK CAO H15 SING N N 54
KMK CAQ H16 SING N N 55
KMK CAR H17 SING N N 56
KMK CAP H18 SING N N 57
KMK CAP H19 SING N N 58
KMK CBH H20 SING N N 59
KMK CBH H21 SING N N 60
KMK CBI H22 SING N N 61
KMK CBI H23 SING N N 62
KMK OBJ H24 SING N N 63
KMK C9 H25 SING N N 64
KMK C9 H26 SING N N 65
KMK N4 H27 SING N N 66
KMK N4 H28 SING N N 67
KMK N2 H29 SING N N 68
KMK N2 H30 SING N N 69
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
KMK InChI InChI 1.03 InChI=1S/C24H30N8O4/c1-36-23(35)16-7-10-31(11-8-16)22(34)15-3-5-18(6-4-15)32(9-2-12-33)14-17-13-27-21-19(28-17)20(25)29-24(26)30-21/h3-6,13,16,33H,2,7-12,14H2,1H3,(H4,25,26,27,29,30)
KMK InChIKey InChI 1.03 NKRKEQBTIYLTPA-UHFFFAOYSA-N
KMK SMILES_CANONICAL CACTVS 3.385 COC(=O)C1CCN(CC1)C(=O)c2ccc(cc2)N(CCCO)Cc3cnc4nc(N)nc(N)c4n3
KMK SMILES CACTVS 3.385 COC(=O)C1CCN(CC1)C(=O)c2ccc(cc2)N(CCCO)Cc3cnc4nc(N)nc(N)c4n3
KMK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 COC(=O)C1CCN(CC1)C(=O)c2ccc(cc2)N(CCCO)Cc3cnc4c(n3)c(nc(n4)N)N
KMK SMILES "OpenEye OEToolkits" 2.0.7 COC(=O)C1CCN(CC1)C(=O)c2ccc(cc2)N(CCCO)Cc3cnc4c(n3)c(nc(n4)N)N
#
_pdbx_chem_comp_identifier.comp_id KMK
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
"methyl 1-[4-[[2,4-bis(azanyl)pteridin-6-yl]methyl-(3-oxidanylpropyl)amino]phenyl]carbonylpiperidine-4-carboxylate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
KMK 'Create component' 2019-06-07 EBI
KMK 'Initial release' 2020-07-15 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
KMK C2 C 5.104 1.091 1
KMK C7 C 10.402 1.122 2
KMK C4 C 6.404 -1.159 3
KMK C6 C 10.402 -0.440 4
KMK CBG C 25.991 -0.500 5
KMK OBE O 24.689 -1.245 6
KMK CBD C 23.393 -0.490 7
KMK OBF O 23.399 1.010 8
KMK CAZ C 22.091 -1.235 9
KMK CBA C 22.085 -2.735 10
KMK CAV C 20.783 -3.480 11
KMK CAY C 20.795 -0.480 12
KMK CAX C 19.493 -1.225 13
KMK NAW N 19.487 -2.725 14
KMK CBB C 18.185 -3.470 15
KMK OBC O 18.179 -4.970 16
KMK CAU C 16.889 -2.715 17
KMK CAT C 15.587 -3.460 18
KMK CAO C 14.291 -2.705 19
KMK CAQ C 16.895 -1.215 20
KMK CAR C 15.599 -0.460 21
KMK CAS C 14.297 -1.205 22
KMK N10 N 13.001 -0.450 23
KMK CAP C 13.006 1.050 24
KMK CBH C 14.308 1.795 25
KMK CBI C 14.314 3.295 26
KMK OBJ O 15.616 4.040 27
KMK C9 C 11.699 -1.195 28
KMK N5 N 9.043 -1.211 29
KMK C4A C 7.702 -0.409 30
KMK N4 N 6.404 -2.659 31
KMK N3 N 5.104 -0.409 32
KMK N2 N 3.805 1.841 33
KMK N1 N 6.404 1.841 34
KMK C8A C 7.702 1.091 35
KMK N8 N 9.043 1.893 36
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
KMK C7 N8 SINGLE NONE 1
KMK C7 C6 DOUBLE NONE 2
KMK N8 C8A DOUBLE NONE 3
KMK C9 C6 SINGLE NONE 4
KMK C9 N10 SINGLE NONE 5
KMK C6 N5 SINGLE NONE 6
KMK C8A N1 SINGLE NONE 7
KMK C8A C4A SINGLE NONE 8
KMK N1 C2 DOUBLE NONE 9
KMK N5 C4A DOUBLE NONE 10
KMK CAP CBH SINGLE NONE 11
KMK CAP N10 SINGLE NONE 12
KMK C4A C4 SINGLE NONE 13
KMK CBH CBI SINGLE NONE 14
KMK N10 CAS SINGLE NONE 15
KMK C2 N2 SINGLE NONE 16
KMK C2 N3 SINGLE NONE 17
KMK C4 N3 DOUBLE NONE 18
KMK C4 N4 SINGLE NONE 19
KMK CAS CAO SINGLE NONE 20
KMK CAS CAR DOUBLE NONE 21
KMK OBJ CBI SINGLE NONE 22
KMK CAO CAT DOUBLE NONE 23
KMK CAR CAQ SINGLE NONE 24
KMK CAT CAU SINGLE NONE 25
KMK CAQ CAU DOUBLE NONE 26
KMK CAU CBB SINGLE NONE 27
KMK CBA CAV SINGLE NONE 28
KMK CBA CAZ SINGLE NONE 29
KMK CBG OBE SINGLE NONE 30
KMK CAV NAW SINGLE NONE 31
KMK CBB OBC DOUBLE NONE 32
KMK CBB NAW SINGLE NONE 33
KMK NAW CAX SINGLE NONE 34
KMK OBF CBD DOUBLE NONE 35
KMK CBD CAZ SINGLE NONE 36
KMK CBD OBE SINGLE NONE 37
KMK CAZ CAY SINGLE NONE 38
KMK CAY CAX SINGLE NONE 39
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
KMK MurckoScaffold S1 scaffold O=C(c1ccc(NCc2cnc3ncncc3n2)cc1)N1CCCCC1 InChI=1S/C19H20N6O/c26-19(25-8-2-1-3-9-25)14-4-6-15(7-5-14)21-10-16-11-22-18-17(24-16)12-20-13-23-18/h4-7,11-13,21H,1-3,8-10H2 XOTCKUVDOKZIDN-UHFFFAOYSA-N
KMK amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
KMK phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
KMK pteridine F3 fragment c1cnc2ncncc2n1 InChI=1S/C6H4N4/c1-2-9-6-5(8-1)3-7-4-10-6/h1-4H CPNGPNLZQNNVQM-UHFFFAOYSA-N
KMK pyrazine F4 fragment c1cnccn1 InChI=1S/C4H4N2/c1-2-6-4-3-5-1/h1-4H KYQCOXFCLRTKLS-UHFFFAOYSA-N
KMK pyrimidine F5 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
KMK C2 S1 1
KMK C7 S1 1
KMK C4 S1 1
KMK C6 S1 1
KMK CAZ S1 1
KMK CBA S1 1
KMK CAV S1 1
KMK CAY S1 1
KMK CAX S1 1
KMK NAW S1 1
KMK CBB S1 1
KMK OBC S1 1
KMK CAU S1 1
KMK CAT S1 1
KMK CAO S1 1
KMK CAQ S1 1
KMK CAR S1 1
KMK CAS S1 1
KMK N10 S1 1
KMK C9 S1 1
KMK N5 S1 1
KMK C4A S1 1
KMK N3 S1 1
KMK N1 S1 1
KMK C8A S1 1
KMK N8 S1 1
KMK NAW F1 1
KMK CBB F1 1
KMK OBC F1 1
KMK CAU F1 1
KMK CAU F2 1
KMK CAT F2 1
KMK CAO F2 1
KMK CAS F2 1
KMK CAR F2 1
KMK CAQ F2 1
KMK C6 F3 1
KMK N5 F3 1
KMK C4A F3 1
KMK C8A F3 1
KMK N8 F3 1
KMK C7 F3 1
KMK N1 F3 1
KMK C2 F3 1
KMK N3 F3 1
KMK C4 F3 1
KMK C7 F4 1
KMK C6 F4 1
KMK N5 F4 1
KMK C4A F4 1
KMK C8A F4 1
KMK N8 F4 1
KMK C4A F5 1
KMK C8A F5 1
KMK N1 F5 1
KMK C2 F5 1
KMK N3 F5 1
KMK C4 F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id KMK
_pdbe_chem_comp_rdkit_properties.exactmw 494.239
_pdbe_chem_comp_rdkit_properties.amw 494.556
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 12
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 12
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 11
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 36
_pdbe_chem_comp_rdkit_properties.NumAtoms 66
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 12
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.417
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 250.321
_pdbe_chem_comp_rdkit_properties.tpsa 173.680
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.681
_pdbe_chem_comp_rdkit_properties.CrippenMR 128.581
_pdbe_chem_comp_rdkit_properties.chi0v 17.211
_pdbe_chem_comp_rdkit_properties.chi1v 9.098
_pdbe_chem_comp_rdkit_properties.chi2v 3.898
_pdbe_chem_comp_rdkit_properties.chi3v 3.898
_pdbe_chem_comp_rdkit_properties.chi4v 2.389
_pdbe_chem_comp_rdkit_properties.chi0n 47.211
_pdbe_chem_comp_rdkit_properties.chi1n 23.795
_pdbe_chem_comp_rdkit_properties.chi2n 3.898
_pdbe_chem_comp_rdkit_properties.chi3n 3.898
_pdbe_chem_comp_rdkit_properties.chi4n 2.389
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.060
_pdbe_chem_comp_rdkit_properties.kappa1 7.250
_pdbe_chem_comp_rdkit_properties.kappa2 11.121
_pdbe_chem_comp_rdkit_properties.kappa3 5.596
_pdbe_chem_comp_rdkit_properties.Phi 2.240
#
_pdbe_chem_comp_external_mappings.comp_id KMK
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PubChem
_pdbe_chem_comp_external_mappings.resource_id 146675128
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
KMK C2 8.360 2.439 1.641 ETKDGv3 1
KMK C7 3.937 0.709 1.936 ETKDGv3 2
KMK C4 7.839 0.486 0.314 ETKDGv3 3
KMK C6 4.231 -0.277 1.068 ETKDGv3 4
KMK CBG -9.958 2.693 0.420 ETKDGv3 5
KMK OBE -8.688 2.105 0.675 ETKDGv3 6
KMK CBD -8.116 1.153 -0.174 ETKDGv3 7
KMK OBF -8.725 0.770 -1.211 ETKDGv3 8
KMK CAZ -6.773 0.570 0.170 ETKDGv3 9
KMK CBA -5.782 0.750 -0.995 ETKDGv3 10
KMK CAV -4.389 0.248 -0.585 ETKDGv3 11
KMK CAY -6.904 -0.915 0.602 ETKDGv3 12
KMK CAX -5.719 -1.785 0.151 ETKDGv3 13
KMK NAW -4.470 -1.014 0.170 ETKDGv3 14
KMK CBB -3.411 -1.376 1.078 ETKDGv3 15
KMK OBC -3.699 -1.855 2.209 ETKDGv3 16
KMK CAU -1.988 -1.178 0.728 ETKDGv3 17
KMK CAT -1.011 -0.827 1.786 ETKDGv3 18
KMK CAO 0.283 -0.664 1.487 ETKDGv3 19
KMK CAQ -1.551 -1.356 -0.530 ETKDGv3 20
KMK CAR -0.124 -1.172 -0.861 ETKDGv3 21
KMK CAS 0.767 -0.839 0.092 ETKDGv3 22
KMK N10 2.167 -0.663 -0.228 ETKDGv3 23
KMK CAP 2.563 0.146 -1.399 ETKDGv3 24
KMK CBH 3.459 -0.626 -2.383 ETKDGv3 25
KMK CBI 2.758 -1.842 -2.994 ETKDGv3 26
KMK OBJ 3.622 -2.504 -3.877 ETKDGv3 27
KMK C9 3.194 -1.278 0.635 ETKDGv3 28
KMK N5 5.560 -0.354 0.517 ETKDGv3 29
KMK C4A 6.470 0.514 0.850 ETKDGv3 30
KMK N4 8.244 -0.514 -0.623 ETKDGv3 31
KMK N3 8.692 1.393 0.701 ETKDGv3 32
KMK N2 9.356 3.390 2.011 ETKDGv3 33
KMK N1 7.164 2.525 2.154 ETKDGv3 34
KMK C8A 6.146 1.584 1.801 ETKDGv3 35
KMK N8 4.950 1.663 2.304 ETKDGv3 36
KMK H1 2.947 0.804 2.359 ETKDGv3 37
KMK H2 -10.194 3.414 1.229 ETKDGv3 38
KMK H3 -9.938 3.234 -0.550 ETKDGv3 39
KMK H4 -10.743 1.908 0.397 ETKDGv3 40
KMK H5 -6.369 1.143 1.035 ETKDGv3 41
KMK H6 -6.134 0.181 -1.885 ETKDGv3 42
KMK H7 -5.715 1.823 -1.279 ETKDGv3 43
KMK H8 -3.912 1.027 0.050 ETKDGv3 44
KMK H9 -3.768 0.112 -1.494 ETKDGv3 45
KMK H10 -6.982 -0.958 1.710 ETKDGv3 46
KMK H11 -7.835 -1.371 0.195 ETKDGv3 47
KMK H12 -5.649 -2.691 0.792 ETKDGv3 48
KMK H13 -5.900 -2.138 -0.888 ETKDGv3 49
KMK H14 -1.344 -0.687 2.807 ETKDGv3 50
KMK H15 0.969 -0.392 2.276 ETKDGv3 51
KMK H16 -2.230 -1.665 -1.316 ETKDGv3 52
KMK H17 0.187 -1.330 -1.882 ETKDGv3 53
KMK H18 1.672 0.531 -1.941 ETKDGv3 54
KMK H19 3.115 1.044 -1.048 ETKDGv3 55
KMK H20 4.394 -0.947 -1.880 ETKDGv3 56
KMK H21 3.752 0.064 -3.205 ETKDGv3 57
KMK H22 1.868 -1.504 -3.566 ETKDGv3 58
KMK H23 2.417 -2.541 -2.197 ETKDGv3 59
KMK H24 4.262 -3.017 -3.318 ETKDGv3 60
KMK H25 3.687 -2.105 0.080 ETKDGv3 61
KMK H26 2.743 -1.748 1.534 ETKDGv3 62
KMK H27 9.219 -0.523 -0.996 ETKDGv3 63
KMK H28 7.576 -1.247 -0.951 ETKDGv3 64
KMK H29 10.316 3.330 1.606 ETKDGv3 65
KMK H30 9.136 4.154 2.689 ETKDGv3 66
#