Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : KDO

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 30


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 1.541 -0.269 -2.261
2 O1A O O1A N N N 0 2.364 -1.061 -1.868
3 O1B O O1B N N N 0 1.565 0.146 -3.537
4 C2 C C2 R N N 0 0.486 0.251 -1.319
5 O2 O O2 N N Y 0 0.602 1.671 -1.215
6 C3 C C3 N N N 0 -0.899 -0.108 -1.859
7 C4 C C4 R N N 0 -1.965 0.453 -0.913
8 O4 O O4 N N N 0 -3.257 0.001 -1.323
9 C5 C C5 R N N 0 -1.669 -0.043 0.506
10 O5 O O5 N N N 0 -1.845 -1.46 0.563
11 C6 C C6 R N N 0 -0.226 0.312 0.868
12 O6 O O6 N N N 0 0.67 -0.335 -0.032
13 C7 C C7 R N N 0 0.068 -0.147 2.297
14 O7 O O7 N N N 0 -0.827 0.502 3.201
15 C8 C C8 N N N 0 1.51 0.21 2.662
16 O8 O O8 N N N 0 1.785 -0.219 3.997
17 HO1B H H1B N N N 0 2.242 -0.187 -4.142
18 HO2 H HO2 N N Y 0 1.489 1.856 -0.876
19 H31 H H31 N N N 0 -1.027 0.325 -2.851
20 H32 H H32 N N N 0 -0.997 -1.192 -1.918
21 H4 H H4 N N N 0 -1.936 1.543 -0.933
22 HO4 H HO4 N N Y 0 -3.394 0.325 -2.223
23 H5 H H5 N N N 0 -2.349 0.437 1.21
24 HO5 H HO5 N N Y 0 -2.765 -1.637 0.323
25 H6 H H6 N N N 0 -0.091 1.392 0.8
26 H7 H H7 N N N 0 -0.066 -1.227 2.366
27 HO7 H HO7 N N Y 0 -0.676 1.453 3.109
28 H81 H H81 N N N 0 1.645 1.289 2.593
29 H82 H H82 N N N 0 2.193 -0.285 1.973
30 HO8 H HO8 N N Y 0 2.701 0.024 4.186