data_KDO
#
_chem_comp.id KDO
_chem_comp.name "3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid"
_chem_comp.type "D-saccharide, alpha linking"
_chem_comp.pdbx_type ATOMS
_chem_comp.formula "C8 H14 O8"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms
"3-deoxy-d-manno-oct-2-ulopyranosonic acid; 2-keto-3-deoxy-D-mannooctanoic acid; 3-deoxy-alpha-D-manno-oct-2-ulosonic acid; 3-deoxy-D-manno-oct-2-ulosonic acid; 3-deoxy-manno-oct-2-ulosonic acid"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2026-01-20
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 238.192
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code KDO
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1FCP
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
_chem_comp.pdbx_pcm Y
#
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1 KDO "3-deoxy-d-manno-oct-2-ulopyranosonic acid" PDB ?
2 KDO "2-keto-3-deoxy-D-mannooctanoic acid" PDB ?
3 KDO "3-deoxy-alpha-D-manno-oct-2-ulosonic acid" PDB ?
4 KDO "3-deoxy-D-manno-oct-2-ulosonic acid" PDB ?
5 KDO "3-deoxy-manno-oct-2-ulosonic acid" PDB ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
KDO C1 C1 C 0 1 N N N N N N 54.860 65.598 52.980 1.541 -0.269 -2.261 C1 KDO 1
KDO O1A O1A O 0 1 N N N N N N 55.576 65.023 52.137 2.364 -1.061 -1.868 O1A KDO 2
KDO O1B O1B O 0 1 N N N N N N 53.631 65.746 52.830 1.565 0.146 -3.537 O1B KDO 3
KDO C2 C2 C 0 1 N N R N N N 55.510 66.151 54.235 0.486 0.251 -1.319 C2 KDO 4
KDO O2 O2 O 0 1 N Y N N N N 55.212 67.494 54.366 0.602 1.671 -1.215 O2 KDO 5
KDO C3 C3 C 0 1 N N N N N N 54.984 65.382 55.453 -0.899 -0.108 -1.859 C3 KDO 6
KDO C4 C4 C 0 1 N N R N N N 55.773 65.751 56.715 -1.965 0.453 -0.913 C4 KDO 7
KDO O4 O4 O 0 1 N N N N N N 55.299 64.977 57.839 -3.257 0.001 -1.323 O4 KDO 8
KDO C5 C5 C 0 1 N N R N N N 57.265 65.480 56.463 -1.669 -0.043 0.506 C5 KDO 9
KDO O5 O5 O 0 1 N N N N N N 57.460 64.078 56.108 -1.845 -1.460 0.563 O5 KDO 10
KDO C6 C6 C 0 1 N N R N N N 57.657 66.392 55.298 -0.226 0.312 0.868 C6 KDO 11
KDO O6 O6 O 0 1 N N N N N N 56.935 65.999 54.102 0.670 -0.335 -0.032 O6 KDO 12
KDO C7 C7 C 0 1 N N R N N N 59.159 66.381 55.058 0.068 -0.147 2.297 C7 KDO 13
KDO O7 O7 O 0 1 N N N N N N 59.791 67.072 56.121 -0.827 0.502 3.201 O7 KDO 14
KDO C8 C8 C 0 1 N N N N N N 59.519 67.048 53.727 1.510 0.210 2.662 C8 KDO 15
KDO O8 O8 O 0 1 N N N N N N 59.358 68.451 53.841 1.785 -0.219 3.997 O8 KDO 16
KDO HO1B H1B H 0 0 N N N N N N 53.085 66.184 53.472 2.242 -0.187 -4.142 HO1B KDO 17
KDO HO2 HO2 H 0 1 N Y N N N N 55.618 67.840 55.151 1.489 1.856 -0.876 HO2 KDO 18
KDO H31 H31 H 0 1 N N N N N N 53.888 65.532 55.593 -1.027 0.325 -2.851 H31 KDO 19
KDO H32 H32 H 0 1 N N N N N N 54.981 64.281 55.275 -0.997 -1.192 -1.918 H32 KDO 20
KDO H4 H4 H 0 1 N N N N N N 55.628 66.830 56.951 -1.936 1.543 -0.933 H4 KDO 21
KDO HO4 HO4 H 0 1 N Y N N N N 55.787 65.205 58.620 -3.394 0.325 -2.223 HO4 KDO 22
KDO H5 H5 H 0 1 N N N N N N 57.888 65.682 57.365 -2.349 0.437 1.210 H5 KDO 23
KDO HO5 HO5 H 0 1 N Y N N N N 58.382 63.910 55.952 -2.765 -1.637 0.323 HO5 KDO 24
KDO H6 H6 H 0 1 N N N N N N 57.377 67.438 55.562 -0.091 1.392 0.800 H6 KDO 25
KDO H7 H7 H 0 1 N N N N N N 59.507 65.322 55.013 -0.066 -1.227 2.366 H7 KDO 26
KDO HO7 HO7 H 0 1 N Y N N N N 60.729 67.065 55.971 -0.676 1.453 3.109 HO7 KDO 27
KDO H81 H81 H 0 1 N N N N N N 60.540 66.768 53.378 1.645 1.289 2.593 H81 KDO 28
KDO H82 H82 H 0 1 N N N N N N 58.938 66.625 52.873 2.193 -0.285 1.973 H82 KDO 29
KDO HO8 HO8 H 0 1 N Y N N N N 59.581 68.864 53.015 2.701 0.024 4.186 HO8 KDO 30
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
KDO C1 O1A DOUB N N 1
KDO C1 O1B SING N N 2
KDO C1 C2 SING N N 3
KDO O1B HO1B SING N N 4
KDO C2 O2 SING N N 5
KDO C2 C3 SING N N 6
KDO C2 O6 SING N N 7
KDO O2 HO2 SING N N 8
KDO C3 C4 SING N N 9
KDO C3 H31 SING N N 10
KDO C3 H32 SING N N 11
KDO C4 O4 SING N N 12
KDO C4 C5 SING N N 13
KDO C4 H4 SING N N 14
KDO O4 HO4 SING N N 15
KDO C5 O5 SING N N 16
KDO C5 C6 SING N N 17
KDO C5 H5 SING N N 18
KDO O5 HO5 SING N N 19
KDO C6 O6 SING N N 20
KDO C6 C7 SING N N 21
KDO C6 H6 SING N N 22
KDO C7 O7 SING N N 23
KDO C7 C8 SING N N 24
KDO C7 H7 SING N N 25
KDO O7 HO7 SING N N 26
KDO C8 O8 SING N N 27
KDO C8 H81 SING N N 28
KDO C8 H82 SING N N 29
KDO O8 HO8 SING N N 30
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
KDO SMILES ACDLabs 10.04 O=C(O)C1(O)OC(C(O)CO)C(O)C(O)C1
KDO SMILES_CANONICAL CACTVS 3.341 OC[C@@H](O)[C@H]1O[C@](O)(C[C@@H](O)[C@H]1O)C(O)=O
KDO SMILES CACTVS 3.341 OC[CH](O)[CH]1O[C](O)(C[CH](O)[CH]1O)C(O)=O
KDO SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C1[C@H]([C@H]([C@H](O[C@]1(C(=O)O)O)[C@@H](CO)O)O)O
KDO SMILES "OpenEye OEToolkits" 1.5.0 C1C(C(C(OC1(C(=O)O)O)C(CO)O)O)O
KDO InChI InChI 1.03 InChI=1S/C8H14O8/c9-2-4(11)6-5(12)3(10)1-8(15,16-6)7(13)14/h3-6,9-12,15H,1-2H2,(H,13,14)/t3-,4-,5-,6-,8-/m1/s1
KDO InChIKey InChI 1.03 NNLZBVFSCVTSLA-HXUQBWEZSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
KDO "SYSTEMATIC NAME" ACDLabs 10.04 "3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid"
KDO "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,4R,5R,6R)-6-[(1R)-1,2-dihydroxyethyl]-2,4,5-trihydroxy-oxane-2-carboxylic acid"
KDO "CONDENSED IUPAC CARBOHYDRATE SYMBOL" GMML 1.0 DKdopa
KDO "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 a-D-Kdop
KDO "SNFG CARBOHYDRATE SYMBOL" GMML 1.0 Kdo
#
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
KDO "CARBOHYDRATE ISOMER" D PDB ?
KDO "CARBOHYDRATE RING" pyranose PDB ?
KDO "CARBOHYDRATE ANOMER" alpha PDB ?
KDO "CARBOHYDRATE PRIMARY CARBONYL GROUP" ketose PDB ?
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
KDO 'Create component' 1999-07-08 EBI
KDO 'Modify descriptor' 2011-06-04 RCSB
KDO 'Other modification' 2019-08-12 RCSB
KDO 'Other modification' 2019-12-19 RCSB
KDO 'Other modification' 2020-07-03 RCSB
KDO 'Modify name' 2020-07-17 RCSB
KDO 'Modify synonyms' 2020-07-17 RCSB
KDO 'Modify atom id' 2020-07-17 RCSB
KDO 'Modify component atom id' 2020-07-17 RCSB
KDO 'Modify PCM' 2026-01-20 RCSB
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id KDO
_pdbx_chem_comp_pcm.modified_residue_id CYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category 'Covalent chemical modification'
_pdbx_chem_comp_pcm.position 'Amino-acid side chain'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom C2
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#
_pdbe_chem_comp_drugbank_details.comp_id KDO
_pdbe_chem_comp_drugbank_details.drugbank_id DB03548
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name '3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid'
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
KDO '3-deoxy-d-manno-oct-2-ulopyranosonic acid' wwPDB ?
KDO '2-keto-3-deoxy-D-mannooctanoic acid' wwPDB ?
KDO '3-deoxy-alpha-D-manno-oct-2-ulosonic acid' wwPDB ?
KDO '3-deoxy-D-manno-oct-2-ulosonic acid' wwPDB ?
KDO '3-deoxy-manno-oct-2-ulosonic acid' wwPDB ?
KDO '3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid' DrugBank ?
KDO '3-deoxy-α-D-manno-oct-2-ulopyranosonic acid' DrugBank ?
KDO 'α-2-keto-3-deoxyoctulosonic acid pyranose' DrugBank ?
KDO 'α-Kdo' DrugBank ?
KDO 'α-KDop' DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id KDO
_pdbe_chem_comp_drugbank_classification.drugbank_id DB03548
_pdbe_chem_comp_drugbank_classification.parent C-glucuronides
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Organooxygen compounds'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic oxygen compounds'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as c-glucuronides. These are glucuronides in which the aglycone is linked to the carbohydrate unit through a C-glycosidic bond.'
#
_pdbe_chem_comp_drugbank_targets.comp_id KDO
_pdbe_chem_comp_drugbank_targets.drugbank_id DB03548
_pdbe_chem_comp_drugbank_targets.name 'Ferrichrome outer membrane transporter/phage receptor'
_pdbe_chem_comp_drugbank_targets.organism 'Escherichia coli (strain K12)'
_pdbe_chem_comp_drugbank_targets.uniprot_id P06971
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
KDO C1 C 5.654 -2.482 1
KDO O1A O 4.154 -2.482 2
KDO O1B O 6.404 -3.781 3
KDO C2 C 6.404 -1.183 4
KDO O2 O 7.154 -2.482 5
KDO C3 C 5.104 -0.433 6
KDO C4 C 5.104 1.067 7
KDO O4 O 3.805 1.817 8
KDO C5 C 6.404 1.817 9
KDO O5 O 6.404 3.317 10
KDO C6 C 7.702 1.067 11
KDO O6 O 7.702 -0.433 12
KDO C7 C 9.002 1.817 13
KDO O7 O 9.002 3.317 14
KDO C8 C 10.301 1.067 15
KDO O8 O 11.600 1.817 16
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
KDO C1 O1A DOUBLE NONE 1
KDO C1 O1B SINGLE NONE 2
KDO C1 C2 SINGLE NONE 3
KDO C2 O2 SINGLE BEGINDASH 4
KDO C2 C3 SINGLE NONE 5
KDO C2 O6 SINGLE NONE 6
KDO C3 C4 SINGLE NONE 7
KDO C4 O4 SINGLE BEGINWEDGE 8
KDO C4 C5 SINGLE NONE 9
KDO C5 O5 SINGLE BEGINWEDGE 10
KDO C5 C6 SINGLE NONE 11
KDO C6 O6 SINGLE BEGINWEDGE 12
KDO C6 C7 SINGLE NONE 13
KDO C7 O7 SINGLE BEGINDASH 14
KDO C7 C8 SINGLE NONE 15
KDO C8 O8 SINGLE NONE 16
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
KDO MurckoScaffold S1 scaffold C1CCOCC1 InChI=1S/C5H10O/c1-2-4-6-5-3-1/h1-5H2 DHXVGJBLRPWPCS-UHFFFAOYSA-N
KDO pyranose F1 fragment OC1CCCCO1 InChI=1S/C5H10O2/c6-5-3-1-2-4-7-5/h5-6H,1-4H2 CELWCAITJAEQNL-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
KDO C2 S1 1
KDO C3 S1 1
KDO C4 S1 1
KDO C5 S1 1
KDO C6 S1 1
KDO O6 S1 1
KDO C5 F1 1
KDO C6 F1 1
KDO O6 F1 1
KDO C2 F1 1
KDO C3 F1 1
KDO C4 F1 1
KDO O2 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id KDO
_pdbe_chem_comp_rdkit_properties.exactmw 238.069
_pdbe_chem_comp_rdkit_properties.amw 238.192
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 6
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 8
_pdbe_chem_comp_rdkit_properties.NumHBD 6
_pdbe_chem_comp_rdkit_properties.NumHBA 8
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 16
_pdbe_chem_comp_rdkit_properties.NumAtoms 30
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 8
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.875
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 5
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 110.518
_pdbe_chem_comp_rdkit_properties.tpsa 147.680
_pdbe_chem_comp_rdkit_properties.CrippenClogP -3.376
_pdbe_chem_comp_rdkit_properties.CrippenMR 47.182
_pdbe_chem_comp_rdkit_properties.chi0v 7.266
_pdbe_chem_comp_rdkit_properties.chi1v 3.587
_pdbe_chem_comp_rdkit_properties.chi2v 1.504
_pdbe_chem_comp_rdkit_properties.chi3v 1.504
_pdbe_chem_comp_rdkit_properties.chi4v 0.813
_pdbe_chem_comp_rdkit_properties.chi0n 21.266
_pdbe_chem_comp_rdkit_properties.chi1n 10.037
_pdbe_chem_comp_rdkit_properties.chi2n 1.504
_pdbe_chem_comp_rdkit_properties.chi3n 1.504
_pdbe_chem_comp_rdkit_properties.chi4n 0.813
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.770
_pdbe_chem_comp_rdkit_properties.kappa1 3.610
_pdbe_chem_comp_rdkit_properties.kappa2 4.616
_pdbe_chem_comp_rdkit_properties.kappa3 2.316
_pdbe_chem_comp_rdkit_properties.Phi 1.041
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
KDO UniChem DrugBank DB03548
KDO UniChem ChEBI 43577
KDO UniChem ZINC ZINC000005851513
KDO UniChem 'PubChem TPHARMA' 16204358
KDO UniChem Nikkaji J1.103.859J
KDO UniChem BRENDA 201107
KDO UniChem BRENDA 207377
KDO UniChem BRENDA 2708
KDO UniChem BRENDA 48598
KDO UniChem BRENDA 99846
KDO UniChem 'Probes And Drugs' PD059614
KDO UniChem PubChem 445569
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
KDO C1 2.586 -1.926 -0.089 ETKDGv3 1
KDO O1A 3.577 -2.272 0.610 ETKDGv3 2
KDO O1B 2.447 -2.430 -1.380 ETKDGv3 3
KDO C2 1.592 -0.922 0.438 ETKDGv3 4
KDO O2 1.427 -1.118 1.827 ETKDGv3 5
KDO C3 2.118 0.502 0.123 ETKDGv3 6
KDO C4 1.072 1.559 0.484 ETKDGv3 7
KDO O4 1.521 2.821 0.063 ETKDGv3 8
KDO C5 -0.275 1.213 -0.177 ETKDGv3 9
KDO O5 -0.180 1.353 -1.573 ETKDGv3 10
KDO C6 -0.659 -0.244 0.188 ETKDGv3 11
KDO O6 0.356 -1.149 -0.229 ETKDGv3 12
KDO C7 -2.001 -0.705 -0.434 ETKDGv3 13
KDO O7 -1.891 -0.753 -1.834 ETKDGv3 14
KDO C8 -3.204 0.173 -0.035 ETKDGv3 15
KDO O8 -3.300 0.301 1.358 ETKDGv3 16
KDO HO1B 3.119 -3.088 -1.756 ETKDGv3 17
KDO HO2 2.261 -0.835 2.285 ETKDGv3 18
KDO H31 2.354 0.580 -0.962 ETKDGv3 19
KDO H32 3.057 0.703 0.686 ETKDGv3 20
KDO H4 0.946 1.564 1.592 ETKDGv3 21
KDO HO4 0.945 3.493 0.514 ETKDGv3 22
KDO H5 -1.045 1.907 0.231 ETKDGv3 23
KDO HO5 -0.334 2.311 -1.780 ETKDGv3 24
KDO H6 -0.791 -0.306 1.293 ETKDGv3 25
KDO H7 -2.196 -1.736 -0.053 ETKDGv3 26
KDO HO7 -2.626 -1.333 -2.163 ETKDGv3 27
KDO H81 -3.111 1.183 -0.487 ETKDGv3 28
KDO H82 -4.141 -0.273 -0.438 ETKDGv3 29
KDO HO8 -3.624 -0.572 1.701 ETKDGv3 30
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