Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : KDA

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 37


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 0.573 -1.23 -2.274
2 O1B O O1A N N N 0 0.713 -0.879 -3.562
3 O1A O O1B N N N 0 0.932 -2.322 -1.903
4 C2 C C2 R N N 0 -0.03 -0.261 -1.291
5 C3 C C3 N N N 0 -1.448 0.1 -1.739
6 C4 C C4 R N N 0 -2.041 1.111 -0.752
7 O4 O O4 N N N 0 -3.414 1.346 -1.073
8 C5 C C5 R N N 0 -1.932 0.534 0.663
9 O5 O O5 N N N 0 -2.771 -0.616 0.776
10 C6 C C6 R N N 0 -0.478 0.141 0.931
11 O6 O O6 N N N 0 -0.071 -0.861 0.002
12 C7 C C7 R N N 0 -0.352 -0.403 2.355
13 O7 O O7 N N N 0 -0.755 0.602 3.287
14 C8 C C8 N N N 0 1.102 -0.794 2.625
15 O8 O O8 N N N 0 1.22 -1.302 3.955
16 O2 O O2 N N N 0 0.768 0.922 -1.24
17 C9 C C9 N N N 0 2.075 0.52 -0.825
18 C10 C C10 N N N 0 2.972 1.729 -0.75
19 C11 C C11 N N N 0 3.535 2.058 0.385
20 HO1B H H1A N N N 0 1.101 -1.501 -4.193
21 H31 H H31 N N N 0 -1.414 0.54 -2.736
22 H32 H H32 N N N 0 -2.066 -0.797 -1.757
23 H4 H H4 N N N 0 -1.487 2.048 -0.81
24 HO4 H HO4 N N Y 0 -3.434 1.696 -1.974
25 H5 H H5 N N N 0 -2.244 1.286 1.389
26 HO5 H HO5 N N Y 0 -3.675 -0.322 0.595
27 H6 H H6 N N N 0 0.16 1.017 0.82
28 H7 H H7 N N N 0 -0.99 -1.279 2.467
29 HO7 H HO7 N N Y 0 -0.167 1.357 3.155
30 H81 H H81 N N N 0 1.41 -1.56 1.914
31 H82 H H82 N N N 0 1.74 0.082 2.513
32 HO8 H HO8 N N Y 0 2.149 -1.536 4.083
33 H91 H H91 N N N 0 2.482 -0.19 -1.544
34 H92 H H92 N N N 0 2.016 0.051 0.156
35 H10 H H10 N N N 0 3.15 2.324 -1.634
36 H111 H H111 N N N 0 4.178 2.924 0.438
37 H112 H H112 N N N 0 3.357 1.462 1.268