data_KDA
#
_chem_comp.id KDA
_chem_comp.name "prop-2-en-1-yl 3-deoxy-alpha-D-manno-oct-2-ulopyranosidonic acid"
_chem_comp.type D-saccharide
_chem_comp.pdbx_type ATOMS
_chem_comp.formula "C11 H18 O8"
_chem_comp.mon_nstd_parent_comp_id KDO
_chem_comp.pdbx_synonyms
;(3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID)-2-O-ALLYL; prop-2-en-1-yl 3-deoxy-alpha-D-manno-oct-2-ulosidonic acid;
prop-2-en-1-yl 3-deoxy-D-manno-oct-2-ulosidonic acid; prop-2-en-1-yl 3-deoxy-manno-oct-2-ulosidonic acid
;
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2003-09-15
_chem_comp.pdbx_modified_date 2020-07-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 278.256
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code KDA
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1Q9Q
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1 KDA "(3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID)-2-O-ALLYL" PDB ?
2 KDA "prop-2-en-1-yl 3-deoxy-alpha-D-manno-oct-2-ulosidonic acid" PDB ?
3 KDA "prop-2-en-1-yl 3-deoxy-D-manno-oct-2-ulosidonic acid" PDB ?
4 KDA "prop-2-en-1-yl 3-deoxy-manno-oct-2-ulosidonic acid" PDB ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
KDA C1 C1 C 0 1 N N N N N N 9.314 35.413 138.955 0.573 -1.230 -2.274 C1 KDA 1
KDA O1B O1A O 0 1 N N N N N N 9.279 34.554 139.881 0.713 -0.879 -3.562 O1B KDA 2
KDA O1A O1B O 0 1 N N N N N N 9.697 35.141 137.789 0.932 -2.322 -1.903 O1A KDA 3
KDA C2 C2 C 0 1 N N R N N N 8.865 36.855 139.242 -0.030 -0.261 -1.291 C2 KDA 4
KDA C3 C3 C 0 1 N N N N N N 7.635 37.126 138.349 -1.448 0.100 -1.739 C3 KDA 5
KDA C4 C4 C 0 1 N N R N N N 7.084 38.542 138.605 -2.041 1.111 -0.752 C4 KDA 6
KDA O4 O4 O 0 1 N N N N N N 5.921 38.722 137.743 -3.414 1.346 -1.073 O4 KDA 7
KDA C5 C5 C 0 1 N N R N N N 6.702 38.639 140.126 -1.932 0.534 0.663 C5 KDA 8
KDA O5 O5 O 0 1 N N N N N N 5.687 37.642 140.425 -2.771 -0.616 0.776 O5 KDA 9
KDA C6 C6 C 0 1 N N R N N N 7.982 38.384 140.968 -0.478 0.141 0.931 C6 KDA 10
KDA O6 O6 O 0 1 N N N N N N 8.468 37.015 140.645 -0.071 -0.861 0.002 O6 KDA 11
KDA C7 C7 C 0 1 N N R N N N 7.646 38.491 142.464 -0.352 -0.403 2.355 C7 KDA 12
KDA O7 O7 O 0 1 N N N N N N 7.373 39.848 142.753 -0.755 0.602 3.287 O7 KDA 13
KDA C8 C8 C 0 1 N N N N N N 8.814 38.033 143.339 1.102 -0.794 2.625 C8 KDA 14
KDA O8 O8 O 0 1 N N N N N N 9.997 38.741 142.976 1.220 -1.302 3.955 O8 KDA 15
KDA O2 O2 O 0 1 N N N N N N 9.927 37.793 138.909 0.768 0.922 -1.240 O2 KDA 16
KDA C9 C9 C 0 1 N N N N N N 11.151 37.526 139.639 2.075 0.520 -0.825 C9 KDA 17
KDA C10 C10 C 0 1 N N N N N N 12.219 38.405 139.045 2.972 1.729 -0.750 C10 KDA 18
KDA C11 C11 C 0 1 N N N N N N 13.423 38.598 139.580 3.535 2.058 0.385 C11 KDA 19
KDA HO1B H1A H 0 0 N N N N N N 8.989 34.759 140.762 1.101 -1.501 -4.193 HO1B KDA 20
KDA H31 H31 H 0 1 N N N N N N 7.860 36.957 137.270 -1.414 0.540 -2.736 H31 KDA 21
KDA H32 H32 H 0 1 N N N N N N 6.849 36.345 138.477 -2.066 -0.797 -1.757 H32 KDA 22
KDA H4 H4 H 0 1 N N N N N N 7.827 39.340 138.375 -1.487 2.048 -0.810 H4 KDA 23
KDA HO4 HO4 H 0 1 N Y N N N N 5.581 39.595 137.900 -3.434 1.696 -1.974 HO4 KDA 24
KDA H5 H5 H 0 1 N N N N N N 6.293 39.647 140.369 -2.244 1.286 1.389 H5 KDA 25
KDA HO5 HO5 H 0 1 N Y N N N N 5.456 37.700 141.344 -3.675 -0.322 0.595 HO5 KDA 26
KDA H6 H6 H 0 1 N N N N N N 8.769 39.138 140.732 0.160 1.017 0.820 H6 KDA 27
KDA H7 H7 H 0 1 N N N N N N 6.770 37.835 142.682 -0.990 -1.279 2.467 H7 KDA 28
KDA HO7 HO7 H 0 1 N Y N N N N 7.165 39.914 143.677 -0.167 1.357 3.155 HO7 KDA 29
KDA H81 H81 H 0 1 N N N N N N 8.585 38.128 144.426 1.410 -1.560 1.914 H81 KDA 30
KDA H82 H82 H 0 1 N N N N N N 8.958 36.928 143.300 1.740 0.082 2.513 H82 KDA 31
KDA HO8 HO8 H 0 1 N Y N N N N 10.722 38.456 143.519 2.149 -1.536 4.083 HO8 KDA 32
KDA H91 H91 H 0 1 N N N N N N 11.040 37.654 140.741 2.482 -0.190 -1.544 H91 KDA 33
KDA H92 H92 H 0 1 N N N N N N 11.428 36.446 139.649 2.016 0.051 0.156 H92 KDA 34
KDA H10 H10 H 0 1 N N N N N N 12.106 38.974 138.107 3.150 2.324 -1.634 H10 KDA 35
KDA H111 H111 H 0 0 N N N N N N 13.536 38.028 140.517 4.178 2.924 0.438 H111 KDA 36
KDA H112 H112 H 0 0 N N N N N N 14.205 39.242 139.144 3.357 1.462 1.268 H112 KDA 37
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
KDA C1 O1B SING N N 1
KDA C1 O1A DOUB N N 2
KDA C1 C2 SING N N 3
KDA O1B HO1B SING N N 4
KDA C2 C3 SING N N 5
KDA C2 O6 SING N N 6
KDA C2 O2 SING N N 7
KDA C3 C4 SING N N 8
KDA C3 H31 SING N N 9
KDA C3 H32 SING N N 10
KDA C4 O4 SING N N 11
KDA C4 C5 SING N N 12
KDA C4 H4 SING N N 13
KDA O4 HO4 SING N N 14
KDA C5 O5 SING N N 15
KDA C5 C6 SING N N 16
KDA C5 H5 SING N N 17
KDA O5 HO5 SING N N 18
KDA C6 O6 SING N N 19
KDA C6 C7 SING N N 20
KDA C6 H6 SING N N 21
KDA C7 O7 SING N N 22
KDA C7 C8 SING N N 23
KDA C7 H7 SING N N 24
KDA O7 HO7 SING N N 25
KDA C8 O8 SING N N 26
KDA C8 H81 SING N N 27
KDA C8 H82 SING N N 28
KDA O8 HO8 SING N N 29
KDA O2 C9 SING N N 30
KDA C9 C10 SING N N 31
KDA C9 H91 SING N N 32
KDA C9 H92 SING N N 33
KDA C10 C11 DOUB N N 34
KDA C10 H10 SING N N 35
KDA C11 H111 SING N N 36
KDA C11 H112 SING N N 37
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
KDA SMILES ACDLabs 10.04 O=C(O)C1(OC\C=C)OC(C(O)CO)C(O)C(O)C1
KDA SMILES_CANONICAL CACTVS 3.341 OC[C@@H](O)[C@H]1O[C@@](C[C@@H](O)[C@H]1O)(OCC=C)C(O)=O
KDA SMILES CACTVS 3.341 OC[CH](O)[CH]1O[C](C[CH](O)[CH]1O)(OCC=C)C(O)=O
KDA SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C=CCO[C@@]1(C[C@H]([C@H]([C@H](O1)[C@@H](CO)O)O)O)C(=O)O
KDA SMILES "OpenEye OEToolkits" 1.5.0 C=CCOC1(CC(C(C(O1)C(CO)O)O)O)C(=O)O
KDA InChI InChI 1.03 InChI=1S/C11H18O8/c1-2-3-18-11(10(16)17)4-6(13)8(15)9(19-11)7(14)5-12/h2,6-9,12-15H,1,3-5H2,(H,16,17)/t6-,7-,8-,9-,11-/m1/s1
KDA InChIKey InChI 1.03 LEEKAQBTVJRLOA-UEWQFTGXSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
KDA "SYSTEMATIC NAME" ACDLabs 10.04 "prop-2-en-1-yl 3-deoxy-alpha-D-manno-oct-2-ulopyranosidonic acid"
KDA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,4R,5R,6R)-6-[(1R)-1,2-dihydroxyethyl]-4,5-dihydroxy-2-prop-2-enoxy-oxane-2-carboxylic acid"
#
_pdbx_chem_comp_related.comp_id KDA
_pdbx_chem_comp_related.related_comp_id KDO
_pdbx_chem_comp_related.relationship_type "Carbohydrate core"
_pdbx_chem_comp_related.details ?
#
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
1 KDA C1 KDO C1 "Carbohydrate core"
2 KDA C2 KDO C2 "Carbohydrate core"
3 KDA C3 KDO C3 "Carbohydrate core"
4 KDA C4 KDO C4 "Carbohydrate core"
5 KDA C5 KDO C5 "Carbohydrate core"
6 KDA C6 KDO C6 "Carbohydrate core"
7 KDA C7 KDO C7 "Carbohydrate core"
8 KDA C8 KDO C8 "Carbohydrate core"
9 KDA O1B KDO O1B "Carbohydrate core"
10 KDA O1A KDO O1A "Carbohydrate core"
11 KDA O2 KDO O2 "Carbohydrate core"
12 KDA O4 KDO O4 "Carbohydrate core"
13 KDA O5 KDO O5 "Carbohydrate core"
14 KDA O6 KDO O6 "Carbohydrate core"
15 KDA O7 KDO O7 "Carbohydrate core"
16 KDA O8 KDO O8 "Carbohydrate core"
17 KDA HO1B KDO HO1B "Carbohydrate core"
18 KDA H31 KDO H31 "Carbohydrate core"
19 KDA H32 KDO H32 "Carbohydrate core"
20 KDA H4 KDO H4 "Carbohydrate core"
21 KDA H5 KDO H5 "Carbohydrate core"
22 KDA H6 KDO H6 "Carbohydrate core"
23 KDA H7 KDO H7 "Carbohydrate core"
24 KDA H81 KDO H81 "Carbohydrate core"
25 KDA H82 KDO H82 "Carbohydrate core"
26 KDA HO4 KDO HO4 "Carbohydrate core"
27 KDA HO5 KDO HO5 "Carbohydrate core"
28 KDA HO7 KDO HO7 "Carbohydrate core"
29 KDA HO8 KDO HO8 "Carbohydrate core"
#
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
KDA "CARBOHYDRATE ISOMER" D PDB ?
KDA "CARBOHYDRATE RING" pyranose PDB ?
KDA "CARBOHYDRATE ANOMER" alpha PDB ?
KDA "CARBOHYDRATE PRIMARY CARBONYL GROUP" ketose PDB ?
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
KDA 'Create component' 2003-09-15 RCSB
KDA 'Modify descriptor' 2011-06-04 RCSB
KDA 'Other modification' 2020-07-03 RCSB
KDA 'Modify parent residue' 2020-07-17 RCSB
KDA 'Modify name' 2020-07-17 RCSB
KDA 'Modify synonyms' 2020-07-17 RCSB
KDA 'Modify linking type' 2020-07-17 RCSB
KDA 'Modify atom id' 2020-07-17 RCSB
KDA 'Modify component atom id' 2020-07-17 RCSB
KDA 'Modify leaving atom flag' 2020-07-17 RCSB
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
KDA '(3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID)-2-O-ALLYL' wwPDB ?
KDA 'prop-2-en-1-yl 3-deoxy-alpha-D-manno-oct-2-ulosidonic acid' wwPDB ?
KDA 'prop-2-en-1-yl 3-deoxy-D-manno-oct-2-ulosidonic acid' wwPDB ?
KDA 'prop-2-en-1-yl 3-deoxy-manno-oct-2-ulosidonic acid' wwPDB ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
KDA C1 C 5.654 -2.482 1
KDA O1B O 4.154 -2.482 2
KDA O1A O 6.404 -3.781 3
KDA C2 C 6.404 -1.183 4
KDA C3 C 5.104 -0.433 5
KDA C4 C 5.104 1.067 6
KDA O4 O 3.805 1.817 7
KDA C5 C 6.404 1.817 8
KDA O5 O 6.404 3.317 9
KDA C6 C 7.702 1.067 10
KDA O6 O 7.702 -0.433 11
KDA C7 C 9.002 1.817 12
KDA O7 O 9.002 3.317 13
KDA C8 C 10.301 1.067 14
KDA O8 O 11.600 1.817 15
KDA O2 O 7.154 -2.482 16
KDA C9 C 8.653 -2.482 17
KDA C10 C 9.403 -3.781 18
KDA C11 C 10.903 -3.781 19
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
KDA C1 O1B SINGLE NONE 1
KDA C1 O1A DOUBLE NONE 2
KDA C1 C2 SINGLE NONE 3
KDA C2 C3 SINGLE NONE 4
KDA C2 O6 SINGLE NONE 5
KDA C2 O2 SINGLE BEGINDASH 6
KDA C3 C4 SINGLE NONE 7
KDA C4 O4 SINGLE BEGINWEDGE 8
KDA C4 C5 SINGLE NONE 9
KDA C5 O5 SINGLE BEGINWEDGE 10
KDA C5 C6 SINGLE NONE 11
KDA C6 O6 SINGLE BEGINWEDGE 12
KDA C6 C7 SINGLE NONE 13
KDA C7 O7 SINGLE BEGINDASH 14
KDA C7 C8 SINGLE NONE 15
KDA C8 O8 SINGLE NONE 16
KDA O2 C9 SINGLE NONE 17
KDA C9 C10 SINGLE NONE 18
KDA C10 C11 DOUBLE NONE 19
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
KDA MurckoScaffold S1 scaffold C1CCOCC1 InChI=1S/C5H10O/c1-2-4-6-5-3-1/h1-5H2 DHXVGJBLRPWPCS-UHFFFAOYSA-N
KDA pyranose F1 fragment OC1CCCCO1 InChI=1S/C5H10O2/c6-5-3-1-2-4-7-5/h5-6H,1-4H2 CELWCAITJAEQNL-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
KDA C2 S1 1
KDA C3 S1 1
KDA C4 S1 1
KDA C5 S1 1
KDA C6 S1 1
KDA O6 S1 1
KDA C5 F1 1
KDA C6 F1 1
KDA O6 F1 1
KDA C2 F1 1
KDA C3 F1 1
KDA C4 F1 1
KDA O2 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id KDA
_pdbe_chem_comp_rdkit_properties.exactmw 278.100
_pdbe_chem_comp_rdkit_properties.amw 278.257
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 10
_pdbe_chem_comp_rdkit_properties.NumHBD 5
_pdbe_chem_comp_rdkit_properties.NumHBA 8
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 19
_pdbe_chem_comp_rdkit_properties.NumAtoms 37
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 8
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.727
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 5
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 134.776
_pdbe_chem_comp_rdkit_properties.tpsa 136.680
_pdbe_chem_comp_rdkit_properties.CrippenClogP -2.166
_pdbe_chem_comp_rdkit_properties.CrippenMR 61.112
_pdbe_chem_comp_rdkit_properties.chi0v 8.766
_pdbe_chem_comp_rdkit_properties.chi1v 4.291
_pdbe_chem_comp_rdkit_properties.chi2v 1.750
_pdbe_chem_comp_rdkit_properties.chi3v 1.750
_pdbe_chem_comp_rdkit_properties.chi4v 0.999
_pdbe_chem_comp_rdkit_properties.chi0n 26.766
_pdbe_chem_comp_rdkit_properties.chi1n 12.832
_pdbe_chem_comp_rdkit_properties.chi2n 1.750
_pdbe_chem_comp_rdkit_properties.chi3n 1.750
_pdbe_chem_comp_rdkit_properties.chi4n 0.999
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.030
_pdbe_chem_comp_rdkit_properties.kappa1 4.000
_pdbe_chem_comp_rdkit_properties.kappa2 6.417
_pdbe_chem_comp_rdkit_properties.kappa3 3.296
_pdbe_chem_comp_rdkit_properties.Phi 1.351
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
KDA UniChem ZINC ZINC000005852687
KDA UniChem PubChem 448056
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
KDA C1 1.272 -1.103 1.643 ETKDGv3 1
KDA O1B 1.578 -2.461 1.705 ETKDGv3 2
KDA O1A 1.345 -0.407 2.691 ETKDGv3 3
KDA C2 0.833 -0.447 0.344 ETKDGv3 4
KDA C3 0.843 -1.468 -0.857 ETKDGv3 5
KDA C4 -0.530 -2.122 -1.068 ETKDGv3 6
KDA O4 -0.805 -2.958 0.028 ETKDGv3 7
KDA C5 -1.626 -1.031 -1.253 ETKDGv3 8
KDA O5 -2.886 -1.481 -0.817 ETKDGv3 9
KDA C6 -1.202 0.311 -0.588 ETKDGv3 10
KDA O6 -0.483 0.041 0.604 ETKDGv3 11
KDA C7 -2.378 1.300 -0.328 ETKDGv3 12
KDA O7 -1.927 2.620 -0.503 ETKDGv3 13
KDA C8 -2.977 1.187 1.086 ETKDGv3 14
KDA O8 -4.069 2.056 1.222 ETKDGv3 15
KDA O2 1.652 0.685 0.048 ETKDGv3 16
KDA C9 3.037 0.382 -0.033 ETKDGv3 17
KDA C10 3.762 1.563 -0.603 ETKDGv3 18
KDA C11 3.787 2.738 0.032 ETKDGv3 19
KDA HO1B 1.864 -2.890 2.577 ETKDGv3 20
KDA H31 1.101 -0.927 -1.795 ETKDGv3 21
KDA H32 1.620 -2.253 -0.738 ETKDGv3 22
KDA H4 -0.474 -2.736 -1.999 ETKDGv3 23
KDA HO4 -1.410 -3.674 -0.297 ETKDGv3 24
KDA H5 -1.718 -0.832 -2.343 ETKDGv3 25
KDA HO5 -2.825 -1.662 0.155 ETKDGv3 26
KDA H6 -0.533 0.827 -1.320 ETKDGv3 27
KDA H7 -3.194 1.097 -1.063 ETKDGv3 28
KDA HO7 -1.905 2.794 -1.480 ETKDGv3 29
KDA H81 -2.212 1.476 1.839 ETKDGv3 30
KDA H82 -3.294 0.150 1.318 ETKDGv3 31
KDA HO8 -4.830 1.632 0.746 ETKDGv3 32
KDA H91 3.238 -0.488 -0.693 ETKDGv3 33
KDA H92 3.455 0.172 0.975 ETKDGv3 34
KDA H10 4.288 1.459 -1.548 ETKDGv3 35
KDA H111 3.275 2.870 0.981 ETKDGv3 36
KDA H112 4.323 3.577 -0.399 ETKDGv3 37
#