Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : JO9

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 48


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C7 C C1 N N N 0 -1.501 -0.001 0.52
2 C8 C C2 N N N 0 -3.716 -0.189 1.432
3 C9 C C3 N N N 0 -4.247 -1.584 1.022
4 C10 C C4 N N N 0 -5.183 -1.462 -0.106
5 C11 C C5 N N N 0 -4.56 -0.905 -1.383
6 C12 C C6 N N N 0 -4.575 0.603 -1.329
7 O1 O O1 N N N 0 3.464 1.678 0.627
8 C1 C C7 N N N 0 3.048 -1.442 -0.177
9 C2 C C8 N N N 0 3.535 -2.581 -1.074
10 C3 C C9 S N N 0 3.171 -0.089 -0.904
11 C4 C C10 N N N 0 4.003 0.842 -0.06
12 C5 C C11 R N N 0 0.895 0.199 -0.09
13 C6 C C12 R N N 0 -0.543 0.422 -0.564
14 O2 O O2 N N N 0 -1.092 -0.609 1.486
15 O3 O O3 N N N 0 -0.252 2.425 1.216
16 N N N1 N N N 0 1.872 0.54 -1.161
17 C C C13 N N N 0 3.831 -1.421 1.137
18 O O O4 N N N 0 5.341 0.743 -0.071
19 C13 C C14 N N N 0 -3.26 1.124 -0.723
20 C14 C C15 N N N 0 -0.572 2.767 0.097
21 N1 N N2 N N N 0 -2.81 0.303 0.419
22 N2 N N3 N N N 0 -0.743 1.841 -0.867
23 S S S1 N N N 0 1.247 -1.597 0.146
24 H12 H H1 N N N 0 -4.553 0.502 1.537
25 H11 H H2 N N N 0 -3.189 -0.266 2.383
26 H14 H H3 N N N 0 -3.41 -2.217 0.729
27 H13 H H4 N N N 0 -4.763 -2.037 1.868
28 H16 H H5 N N N 0 -5.593 -2.449 -0.324
29 H15 H H6 N N N 0 -6.003 -0.809 0.192
30 H18 H H7 N N N 0 -3.532 -1.256 -1.468
31 H17 H H8 N N N 0 -5.133 -1.244 -2.246
32 H19 H H9 N N N 0 -4.69 0.999 -2.339
33 H20 H H10 N N N 0 -5.412 0.934 -0.716
34 H4 H H11 N N N 0 3.404 -3.532 -0.558
35 H5 H H12 N N N 0 2.958 -2.588 -1.999
36 H6 H H13 N N N 0 4.59 -2.436 -1.306
37 H7 H H14 N N N 0 3.678 -0.246 -1.856
38 H10 H H15 N N N 0 1.098 0.763 0.821
39 H H H16 N N N 0 -0.725 -0.17 -1.461
40 H25 H H17 N N N 0 1.518 0.28 -2.07
41 H2 H H19 N N N 0 4.889 -1.264 0.927
42 H1 H H20 N N N 0 3.462 -0.611 1.767
43 H3 H H21 N N N 0 3.7 -2.372 1.653
44 H8 H H22 N N N 0 5.832 1.362 0.487
45 H21 H H23 N N N 0 -2.487 1.114 -1.492
46 H22 H H24 N N N 0 -3.408 2.149 -0.384
47 H24 H H25 N N N 0 -0.719 3.813 -0.126
48 H23 H H26 N N N 0 -0.999 2.115 -1.762