Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : J2Z

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 43


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C10 C C10 S N N 0 -1.717 0.581 -0.315
2 C12 C C12 R N N 0 -0.263 0.714 0.093
3 C14 C C14 N N N 0 0.34 2.036 -0.382
4 C15 C C15 N N N 0 1.737 2.169 0.224
5 C16 C C16 N Y N 0 2.541 0.911 0.023
6 C17 C C17 N Y N 0 3.913 0.986 0.225
7 C18 C C18 N Y N 0 4.71 -0.134 0.065
8 C19 C C19 N Y N 0 4.134 -1.342 -0.299
9 C2 C C2 S N N 0 0.499 -0.426 -0.595
10 C20 C C20 N Y N 0 2.773 -1.414 -0.502
11 C21 C C21 N Y N 0 1.973 -0.29 -0.347
12 C3 C C3 N N N 0 -0.027 -1.787 -0.163
13 C4 C C4 N N N 0 -1.538 -1.898 -0.423
14 C5 C C5 S N N 0 -2.222 -0.758 0.3
15 C6 C C6 N N N 0 -1.844 -0.811 1.781
16 C7 C C7 N N N 0 -3.712 -0.659 0.171
17 C8 C C8 R N N 0 -4.043 0.827 0.256
18 C9 C C9 N N N 0 -2.686 1.58 0.328
19 H10 H H10 N N N 0 -1.823 0.581 -1.4
20 H114 H H114 N N N 0 0.41 2.039 -1.47
21 H115 H H115 N N N 0 2.254 3.003 -0.25
22 H12 H H12 N N N 0 -0.171 0.623 1.175
23 H13 H H13 N N N 0 0.494 -2.567 -0.719
24 H14 H H14 N N N 0 -1.916 -2.851 -0.051
25 H16 H H16 N N N 0 -2.287 -1.697 2.237
26 H17 H H17 N N N 0 4.362 1.926 0.51
27 H19 H H19 N N N 0 -2.726 2.505 -0.247
28 H19A H H19A N N N 0 4.748 -2.222 -0.422
29 H2 H H2 N N N 0 0.343 -0.332 -1.669
30 H20 H H20 N N N 0 2.324 -2.354 -0.786
31 H214 H H214 N N N 0 -0.285 2.865 -0.051
32 H215 H H215 N N N 0 1.645 2.367 1.292
33 H23 H H23 N N N 0 0.155 -1.922 0.903
34 H24 H H24 N N N 0 -1.722 -1.82 -1.495
35 H26 H H26 N N N 0 -0.759 -0.857 1.878
36 H29 H H29 N N N 0 -2.408 1.779 1.363
37 H36 H H36 N N N 0 -2.216 0.081 2.284
38 H8 H H8 N N N 0 -4.629 1.029 1.153
39 HO2 H HO2 N N N 0 -5.626 0.799 -1.007
40 HO3 H HO3 N N N 0 6.327 -0.229 1.174
41 O2 O O2 N N N 0 -4.768 1.235 -0.905
42 O3 O O3 N N N 0 6.052 -0.05 0.264
43 O1 O O1 N N N 0 -4.492 -1.571 0.034