Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : IVN

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 60


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C4 C C1 N Y N 0 -2.084 0.86 -0.348
2 C5 C C2 N Y N 0 -1.101 -0.074 -0.031
3 C6 C C3 N Y N 0 0.213 0.367 0.104
4 N1 N N1 N Y N 0 0.484 1.655 -0.073
5 N3 N N2 N Y N 0 -1.736 2.137 -0.511
6 O O O1 N N N 0 -10.618 -0.473 0.123
7 C C C4 N N N 0 -9.684 -1.231 0.241
8 OXT O O2 N N N 0 -9.894 -2.557 0.251
9 CA C C5 R N N 0 -8.285 -0.688 0.378
10 N N N3 N N N 0 -8.344 0.713 0.814
11 CB C C6 N N N 0 -7.571 -0.772 -0.972
12 CG C C7 N Y N 0 -6.135 -0.345 -0.809
13 CD2 C C8 N Y N 0 -5.168 -1.284 -0.499
14 CE2 C C9 N Y N 0 -3.852 -0.899 -0.349
15 CD1 C C10 N Y N 0 -5.789 0.984 -0.975
16 CE1 C C11 N Y N 0 -4.476 1.381 -0.827
17 CZ C C12 N Y N 0 -3.497 0.44 -0.509
18 C2 C C13 N Y N 0 -0.476 2.517 -0.374
19 NAB N N4 N N N 0 -0.153 3.851 -0.55
20 OAX O O3 N N N 0 1.202 -0.506 0.413
21 CBJ C C14 R N N 0 2.523 0.025 0.533
22 CBL C C15 N N N 0 2.769 0.456 1.981
23 F1 F F1 N N N 0 4.062 0.977 2.099
24 F3 F F2 N N N 0 1.837 1.436 2.341
25 F2 F F3 N N N 0 2.633 -0.65 2.826
26 CBG C C16 N Y N 0 3.527 -1.03 0.146
27 CAP C C17 N Y N 0 3.206 -2.367 0.269
28 CAJ C C18 N Y N 0 4.126 -3.337 -0.086
29 CBB C C19 N Y N 0 5.371 -2.97 -0.566
30 CL1 CL CL1 N N N 0 6.523 -4.189 -1.011
31 CAR C C20 N Y N 0 5.697 -1.632 -0.693
32 CBH C C21 N Y N 0 4.773 -0.658 -0.342
33 NBK N N5 N Y N 0 5.1 0.699 -0.469
34 NAW N N6 N Y N 0 4.315 1.682 -1.086
35 CAZ C C22 N Y N 0 4.952 2.823 -1.007
36 CAA C C23 N N N 0 4.467 4.145 -1.544
37 CAK C C24 N Y N 0 6.162 2.604 -0.339
38 CAQ C C25 N Y N 0 6.227 1.292 -0.014
39 H1 H H1 N N N 0 -1.351 -1.115 0.108
40 H2 H H2 N N N 0 -10.809 -2.857 0.161
41 H3 H H3 N N N 0 -7.738 -1.276 1.116
42 H4 H H4 N N N 0 -8.847 1.279 0.147
43 H5 H H5 N N N 0 -8.753 0.789 1.733
44 H7 H H7 N N N 0 -7.606 -1.799 -1.338
45 H8 H H8 N N N 0 -8.067 -0.115 -1.687
46 H9 H H9 N N N 0 -5.444 -2.321 -0.375
47 H10 H H10 N N N 0 -3.097 -1.633 -0.106
48 H11 H H11 N N N 0 -6.548 1.712 -1.222
49 H12 H H12 N N N 0 -4.206 2.418 -0.956
50 H13 H H13 N N N 0 -0.845 4.493 -0.771
51 H14 H H14 N N N 0 0.767 4.144 -0.453
52 H15 H H15 N N N 0 2.629 0.887 -0.125
53 H16 H H16 N N N 0 2.235 -2.657 0.645
54 H17 H H17 N N N 0 3.872 -4.382 0.012
55 H18 H H18 N N N 0 6.667 -1.346 -1.072
56 H19 H H19 N N N 0 3.889 4.659 -0.776
57 H20 H H20 N N N 0 5.322 4.758 -1.827
58 H21 H H21 N N N 0 3.838 3.973 -2.418
59 H22 H H22 N N N 0 6.91 3.351 -0.118
60 H23 H H23 N N N 0 7.036 0.805 0.51