Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : IN5

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 40


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N Y N 0 -1.421 -0.303 2.761
2 C2 C C2 N Y N 0 0.403 -0.133 4.157
3 C3 C C3 N Y N 0 1.222 0.244 3.103
4 O4 O O4 N N N 0 -2.595 -0.976 -1.994
5 O5 O O5 N N N 0 -4.87 -0.421 -1.052
6 C7 C C7 N N N 0 -1.307 0.17 0.3
7 C8 C C8 N N N 0 1.531 0.755 0.654
8 C9 C C9 R N N 0 2.93 0.023 -1.095
9 C10 C C10 N N N 0 4.096 -0.942 -1.314
10 N1 N N1 N Y N 0 -0.874 -0.392 3.957
11 C4 C C4 N Y N 0 0.677 0.348 1.827
12 C5 C C5 N Y N 0 -0.67 0.072 1.663
13 O1 O O1 N N N 0 2.538 0.51 3.315
14 C6 C C6 N N N 0 0.979 -0.25 5.545
15 O2 O O2 N N N 0 -2.691 -0.172 0.396
16 N2 N N2 N N N 0 2.115 -0.441 0.034
17 P1 P P1 N N N 0 -3.305 -0.047 -1.086
18 O3 O O3 N N N 0 -3.126 1.462 -1.616
19 P2 P P2 N N N 0 1.903 0.087 -2.6
20 O6 O O6 N N N 0 0.775 1.022 -2.388
21 O7 O O7 N N N 0 2.797 0.597 -3.838
22 O8 O O8 N N N 0 1.329 -1.381 -2.921
23 H1 H H1 N N N 0 -2.471 -0.523 2.638
24 HO5 H HO5 N N N 0 -5.198 -0.334 -1.957
25 H71 H 1H7 N N N 0 -1.21 1.189 -0.073
26 H72 H 2H7 N N N 0 -0.809 -0.516 -0.383
27 H81 H 1H8 N N N 0 2.329 1.413 0.997
28 H82 H 2H8 N N N 0 0.916 1.28 -0.076
29 H9 H H9 N N N 0 3.318 1.018 -0.877
30 H101 H 1H10 N N N 0 3.708 -1.937 -1.531
31 H102 H 2H10 N N N 0 4.701 -0.597 -2.152
32 H103 H 3H10 N N N 0 4.71 -0.98 -0.414
33 HO1 H HO1 N N N 0 2.603 1.453 3.518
34 H61 H 1H6 N N N 0 0.89 0.708 6.057
35 H62 H 2H6 N N N 0 0.433 -1.011 6.102
36 H63 H 3H6 N N N 0 2.03 -0.531 5.48
37 HN2 H HN2 N N N 0 1.348 -0.967 -0.357
38 HO3 H HO3 N N N 0 -3.602 2.033 -0.998
39 HO7 H HO7 N N N 0 2.217 0.616 -4.612
40 HO8 H HO8 N N N 0 2.095 -1.958 -3.052