Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : I3P

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 39


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 R N N 0 0.516 0.078 1.915
2 C2 C C2 R N N 0 1.904 -0.086 1.294
3 C3 C C3 S N N 0 1.786 -0.864 -0.017
4 C4 C C4 R N N 0 0.883 -0.098 -0.985
5 C5 C C5 R N N 0 -0.505 0.066 -0.364
6 C6 C C6 S N N 0 -0.387 0.844 0.947
7 O1 O O1 N N N 0 0.626 0.805 3.14
8 O2 O O2 N N N 0 2.466 1.201 1.035
9 O3 O O3 N N N 0 3.083 -1.019 -0.598
10 O4 O O4 N N N 0 0.773 -0.825 -2.211
11 O5 O O5 N N N 0 -1.349 0.781 -1.268
12 O6 O O6 N N N 0 -1.684 0.999 1.527
13 P1 P P1 N N N 0 0.06 -0.153 4.303
14 O11 O O11 N N N 0 0.865 -1.394 4.354
15 O12 O O12 N N N 0 0.154 0.606 5.719
16 O13 O O13 N N N 0 -1.475 -0.523 3.993
17 P4 P P4 N N N 0 1.338 0.133 -3.373
18 O41 O O41 N N N 0 2.75 0.473 -3.089
19 O42 O O42 N N N 0 1.244 -0.626 -4.79
20 O43 O O43 N N N 0 0.462 1.483 -3.429
21 P5 P P5 N N N 0 -2.59 -0.185 -1.611
22 O51 O O51 N N N 0 -3.316 -0.517 -0.365
23 O52 O O52 N N N 0 -3.587 0.56 -2.631
24 O53 O O53 N N N 0 -2.042 -1.539 -2.29
25 H1 H H1 N N N 0 0.087 -0.903 2.112
26 H2 H H2 N N N 0 2.548 -0.632 1.983
27 H3 H H3 N N N 0 1.357 -1.847 0.179
28 H4 H H4 N N N 0 1.311 0.883 -1.183
29 H5 H H5 N N N 0 -0.934 -0.915 -0.167
30 H6 H H6 N N N 0 0.041 1.827 0.749
31 HO2 H HO2 N N N 0 3.339 1.052 0.645
32 HO3 H HO3 N N N 0 3.62 -1.505 0.042
33 HO6 H HO6 N N N 0 -1.565 1.493 2.35
34 HO12 H 2HO1 N N N 0 -0.193 -0.001 6.386
35 HO13 H 3HO1 N N N 0 -1.964 0.31 3.969
36 HO42 H 2HO4 N N N 0 1.592 -0.018 -5.457
37 HO43 H 3HO4 N N N 0 -0.448 1.217 -3.616
38 HO52 H 2HO5 N N N 0 -4.313 -0.051 -2.81
39 HO53 H 3HO5 N N N 0 -1.577 -1.279 -3.097