Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : HRD

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 30


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N Y N 0 2.634 -1.467 0.0
2 N3 N N3 N Y N 0 2.983 0.698 -0.001
3 C4 C C4 N Y N 0 3.56 -0.539 0.0
4 C5 C C5 N N N 0 5.857 0.346 0.001
5 C6 C C6 N Y N 0 1.607 0.508 -0.001
6 C7 C C7 N Y N 0 0.53 1.37 -0.001
7 C8 C C8 N Y N 0 -0.764 0.854 0.0
8 C10 C C10 N N N 0 -3.279 -0.213 0.0
9 C1 C C1 N Y N 0 -0.977 -0.547 0.001
10 C2 C C2 N Y N 0 0.112 -1.41 -0.001
11 C3 C C3 N Y N 0 1.406 -0.889 -0.001
12 N2 N N2 N N N 0 4.916 -0.777 0.001
13 C9 C C9 N N N 0 -1.941 1.732 0.0
14 O1 O O1 N N N 0 -1.823 2.944 0.0
15 N4 N N4 N N N 0 -3.16 1.147 0.001
16 N5 N N5 N N N 0 -4.539 -0.759 0.0
17 C11 C C11 N N N 0 -4.706 -2.215 0.0
18 N6 N N6 N N N 0 -2.25 -1.02 0.001
19 H5 H H5 N N N 0 5.696 0.954 0.891
20 H5A H H5A N N N 0 6.878 -0.036 0.002
21 H7 H H7 N N N 0 0.689 2.439 0.0
22 H2 H H2 N N N 0 -0.042 -2.479 -0.001
23 H11 H H11 N N N 0 -4.237 -2.634 -0.89
24 H11A H H11A N N N 0 -4.237 -2.635 0.89
25 H9 H H9 N N N 0 5.697 0.954 -0.889
26 H10 H H10 N N N 0 5.248 -1.689 0.001
27 H111 H H111 N N N 0 -5.318 -0.182 0.0
28 H12 H H12 N N N 0 -5.768 -2.459 0.0
29 H13 H H13 N N N 0 -3.958 1.699 0.001
30 H121 H H121 N N N 0 3.447 1.549 -0.001